mRNA_Ecto-sp13_S_contig56730.16034.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56730.16034.1
Unique NamemRNA_Ecto-sp13_S_contig56730.16034.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig56730.16034.1 vs. uniprot
Match: D8LAV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV0_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 1.600e-48
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 3
Query:    3 EVEEFGSGGTAFLSTPSIYFSLDKDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQV 236
            EV EFGSGGTAFLSTPSIYFSLD+DLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQV
Sbjct:   37 EVGEFGSGGTAFLSTPSIYFSLDRDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQV 114          
BLAST of mRNA_Ecto-sp13_S_contig56730.16034.1 vs. uniprot
Match: A0A835YKM7_9STRA (Putative N6-adenine methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKM7_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.430e-30
Identity = 51/78 (65.38%), Postives = 60/78 (76.92%), Query Frame = 3
Query:    3 EVEEFGSGGTAFLSTPSIYFSLDKDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQV 236
            EV EFG  GTAFLSTPSIYFS   ++R KCKVFD+DT W KDPGFV +D+ K  D+P  L GTF MVV+DPPF+ R+V
Sbjct:   33 EVVEFGGEGTAFLSTPSIYFSTPAEIRQKCKVFDIDTAWKKDPGFVYFDFNKLDDVPADLHGTFAMVVIDPPFIMREV 110          
BLAST of mRNA_Ecto-sp13_S_contig56730.16034.1 vs. uniprot
Match: A0A8J8NP72_HALGN (Uncharacterized protein n=2 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NP72_HALGN)

HSP 1 Score: 102 bits (255), Expect = 7.370e-26
Identity = 50/79 (63.29%), Postives = 62/79 (78.48%), Query Frame = 3
Query:    3 EVEEFGSGGTAFLSTPSIYFSL-DKDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQV 236
            E E+FG    AFLSTPSIYFSL +K+++A  +VFD DTK+ KDPGFV YD+ KP+DIP  L   FDMVV+DPPF+TR+V
Sbjct:   33 ECEQFGQK-IAFLSTPSIYFSLKNKEIKAASRVFDFDTKFNKDPGFVFYDFNKPEDIPADLHNYFDMVVIDPPFITREV 110          
BLAST of mRNA_Ecto-sp13_S_contig56730.16034.1 vs. uniprot
Match: A0A812ZQJ4_9DINO (EEF1AKMT1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812ZQJ4_9DINO)

HSP 1 Score: 103 bits (256), Expect = 9.830e-26
Identity = 46/69 (66.67%), Postives = 53/69 (76.81%), Query Frame = 3
Query:   30 TAFLSTPSIYFSLDKDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQV 236
            TAFLSTPSIYF L K+LRAKC VFD D +W  DPGFV YD+  P + PE L  TFD VV+DPPF+TR+V
Sbjct:   42 TAFLSTPSIYFCLPKELRAKCMVFDFDKQWKDDPGFVFYDFNDPTEFPEELLHTFDAVVIDPPFITREV 110          
BLAST of mRNA_Ecto-sp13_S_contig56730.16034.1 vs. uniprot
Match: A0A7S1G4D1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4D1_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.810e-25
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 3
Query:    9 EEFGSGGTA-FLSTPSIYFSLDKDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQV 236
            E   +GG A F+STPSIYFSL K+ R    VFDLDT+W KDPGFV YD+ +P++ PE LR  FDM+VVDPPF+TR+V
Sbjct:   38 EVVATGGKACFISTPSIYFSLTKEQREGNYVFDLDTQWEKDPGFVRYDFNEPENFPEELRHAFDMIVVDPPFITREV 114          
BLAST of mRNA_Ecto-sp13_S_contig56730.16034.1 vs. uniprot
Match: C1FFV8_MICCC (Uncharacterized protein n=2 Tax=Eukaryota TaxID=2759 RepID=C1FFV8_MICCC)

HSP 1 Score: 99.0 bits (245), Expect = 3.820e-24
Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 3
Query:   33 AFLSTPSIYFSLDKDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIP--ETLRGTFDMVVVDPPFVTRQV 236
            AFLSTPS+YFSL K++RA+   FDLDT+W K+PG+V YD+ KP D    E L+GTFDMV++DPPF+TR+V
Sbjct:   62 AFLSTPSVYFSLSKEVRARSWCFDLDTQWQKEPGYVCYDFNKPIDFEGAEELKGTFDMVIIDPPFITREV 131          
BLAST of mRNA_Ecto-sp13_S_contig56730.16034.1 vs. uniprot
Match: J9IRF9_9SPIT (N6-adenineMlase domain containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IRF9_9SPIT)

HSP 1 Score: 97.4 bits (241), Expect = 9.250e-24
Identity = 46/79 (58.23%), Postives = 59/79 (74.68%), Query Frame = 3
Query:    3 EVEEFGSGGTAFLSTPSIYFSL-DKDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQV 236
            E E+FG    AFLSTPS+YFSL +K+++A  K FD D K+ KDP F+ YD+ KP+DIP  L   FDMVV+DPPF+TR+V
Sbjct:   33 ECEQFGKK-IAFLSTPSVYFSLKNKEIKANSKCFDYDEKFGKDPNFIFYDFNKPEDIPRELEKQFDMVVIDPPFITREV 110          
BLAST of mRNA_Ecto-sp13_S_contig56730.16034.1 vs. uniprot
Match: A0A812SYR4_SYMPI (Eef1akmt1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812SYR4_SYMPI)

HSP 1 Score: 100 bits (248), Expect = 1.590e-23
Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 3
Query:   21 SGGTAFLSTPSIYFSLDKDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQV 236
            SG  A +S+PS+YFSL ++ R  CKVFD D +W  DPGFV YD+ +P+D+PE LRG F  V++DPPF+TR+V
Sbjct:   38 SGPAALVSSPSVYFSLPEERRRSCKVFDFDRQWDTDPGFVFYDFNRPEDLPEDLRGAFHFVLIDPPFITREV 109          
BLAST of mRNA_Ecto-sp13_S_contig56730.16034.1 vs. uniprot
Match: A0A812RZH7_9DINO (Eef1akmt1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812RZH7_9DINO)

HSP 1 Score: 96.7 bits (239), Expect = 2.300e-23
Identity = 42/79 (53.16%), Postives = 59/79 (74.68%), Query Frame = 3
Query:    6 VEEF--GSGGTAFLSTPSIYFSLDKDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQV 236
            VEE    +G  A +S+PS+YFSL ++ R KCKV D D +W  DPGFV YD+ +P+++PE LRG+F  V++DPPF+TR+V
Sbjct:   31 VEEICDANGPAALVSSPSVYFSLPEEHRRKCKVLDFDRQWESDPGFVFYDFHEPENLPEALRGSFAFVLIDPPFITREV 109          
BLAST of mRNA_Ecto-sp13_S_contig56730.16034.1 vs. uniprot
Match: A0A7S3I0D0_9SPIT (Hypothetical protein n=1 Tax=Favella ehrenbergii TaxID=182087 RepID=A0A7S3I0D0_9SPIT)

HSP 1 Score: 95.9 bits (237), Expect = 2.830e-23
Identity = 44/71 (61.97%), Postives = 56/71 (78.87%), Query Frame = 3
Query:   27 GTAFLSTPSIYFSL-DKDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQV 236
            G AFLSTPSIYFSL DK ++A+ K  D DT + KDP +V YD+ +P+D+PE L GTF MVV+DPPF+TR+V
Sbjct:   28 GCAFLSTPSIYFSLKDKGVKARSKCLDFDTAFNKDPNYVFYDFNRPEDLPEELCGTFHMVVIDPPFITREV 98          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56730.16034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAV0_ECTSI1.600e-4897.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YKM7_9STRA3.430e-3065.38Putative N6-adenine methyltransferase-domain-conta... [more]
A0A8J8NP72_HALGN7.370e-2663.29Uncharacterized protein n=2 Tax=Halteria grandinel... [more]
A0A812ZQJ4_9DINO9.830e-2666.67EEF1AKMT1 protein n=1 Tax=Symbiodinium sp. KB8 Tax... [more]
A0A7S1G4D1_9STRA4.810e-2562.34Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
C1FFV8_MICCC3.820e-2462.86Uncharacterized protein n=2 Tax=Eukaryota TaxID=27... [more]
J9IRF9_9SPIT9.250e-2458.23N6-adenineMlase domain containing protein n=1 Tax=... [more]
A0A812SYR4_SYMPI1.590e-2356.94Eef1akmt1 protein n=1 Tax=Symbiodinium pilosum Tax... [more]
A0A812RZH7_9DINO2.300e-2353.16Eef1akmt1 protein n=1 Tax=Symbiodinium natans TaxI... [more]
A0A7S3I0D0_9SPIT2.830e-2361.97Hypothetical protein n=1 Tax=Favella ehrenbergii T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56730contigEcto-sp13_S_contig56730:317..839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size238
Hectar predicted targeting categorymitochondrion
Exons2
Cds size237
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463785.3458936-CDS-Ecto-sp13_S_contig56730:316..4491681463785.3458936-CDS-Ecto-sp13_S_contig56730:316..449Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56730 317..449 -
1681463785.3591895-CDS-Ecto-sp13_S_contig56730:735..8391681463785.3591895-CDS-Ecto-sp13_S_contig56730:735..839Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56730 736..839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56730.16034.1prot_Ecto-sp13_S_contig56730.16034.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56730 317..839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56730.16034.1

>prot_Ecto-sp13_S_contig56730.16034.1 ID=prot_Ecto-sp13_S_contig56730.16034.1|Name=mRNA_Ecto-sp13_S_contig56730.16034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
RKWRSLDLAVPRFCPPRAFTSPWTRISGRNARFLTLTPSGRKTPVSCFMT
IPSLKISRKRYGVHSTWSLSTLRSSLDR*
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mRNA from alignment at Ecto-sp13_S_contig56730:317..839-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56730.16034.1 ID=mRNA_Ecto-sp13_S_contig56730.16034.1|Name=mRNA_Ecto-sp13_S_contig56730.16034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=523bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56730:317..839- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGAAGTGGAGGAGTTTGGATCTGGCGGTACCGCGTTTCTGTCCACCCCG AGCATTTACTTCTCCTTGGACAAGGATCTCAGGGCGAAATGCAAGGTTTT TGACGTGAGTTATTACGCACCGTGGTATGTTCAGGGGTGTCTTTCGGTTG CGACTGGAATGGACACGGGCCGCCTCGTATCCTCACAACCTGTGGACGGT ACTGCCCTTGAGATAGACTTTAGGGCACATGCAACCCCCTCCTTACCGGA GTATTCAAGTTGACCACTTCATTGCTCTACTTGTCGAGAATCTCAGGGAG AGCTCCATGAAAAAACTGAAGATCGATAGCTGCGTTCTTGTTCTCATACC GCGCCAACCCCACCACGGTACGCGCTAATGAGTTGTTCAGCTTGACACCA AGTGGGCGAAAGACCCCGGTTTCGTGCTTTATGACTATACCAAGCCTCAA GATATCCCGGAAACGTTACGGGGTACATTCGACATGGTCGTTGTCGACCC TCCGTTCGTCACTAGACAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56730:317..839-

>mRNA_Ecto-sp13_S_contig56730.16034.1 ID=mRNA_Ecto-sp13_S_contig56730.16034.1|Name=mRNA_Ecto-sp13_S_contig56730.16034.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56730:317..839- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGAAGTGGAGGAGTTTGGATCTGGCGGTACCGCGTTTCTGTCCACCCCG
AGCATTTACTTCTCCTTGGACAAGGATCTCAGGGCGAAATGCAAGGTTTT
TGACCTTGACACCAAGTGGGCGAAAGACCCCGGTTTCGTGCTTTATGACT
ATACCAAGCCTCAAGATATCCCGGAAACGTTACGGGGTACATTCGACATG
GTCGTTGTCGACCCTCCGTTCGTCACTAGACAGGTGA
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