mRNA_Ecto-sp13_S_contig56722.16033.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig56722.16033.1 vs. uniprot
Match: UPI001423D26E (hypothetical protein n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI001423D26E) HSP 1 Score: 380 bits (977), Expect = 1.700e-133 Identity = 186/192 (96.88%), Postives = 191/192 (99.48%), Query Frame = 1
Query: 13 MSGDPLETARQALEPGETLVWADRPSPEAFARTKVPQVIRGVLGLAVIAGLHWYGYVPDWRIGGQHALLFGFLIAASAYCLVLIFSPNIAKISARSMVYAVTDRRIMILSLWPFRRSRVFLPGEIDAPRTMATEAGQGVVVFMEQKLPWWKRSAGGSYQIEAFYGIADAPMVAEAIEKLKGPHEASPFEDED 588
MSGDPLETARQALEPGETLVWADRPSPEAFARTKVPQVIRGVLGLAVIAGLHWYGYVPDWRIGGQHALLFGFLIAASAYCLVLIFSPNIAKISARSMVYAVTDRRIMILSLWPFRRSRVFLPGEIDAPRTMATEAG+GVVVF+E+KLPWWKRSAGGSYQIEAFYGIADAPMVAEAIEKLKGP EASPF++ED
Sbjct: 1 MSGDPLETARQALEPGETLVWADRPSPEAFARTKVPQVIRGVLGLAVIAGLHWYGYVPDWRIGGQHALLFGFLIAASAYCLVLIFSPNIAKISARSMVYAVTDRRIMILSLWPFRRSRVFLPGEIDAPRTMATEAGRGVVVFLERKLPWWKRSAGGSYQIEAFYGIADAPMVAEAIEKLKGPQEASPFDNED 192
BLAST of mRNA_Ecto-sp13_S_contig56722.16033.1 vs. uniprot
Match: A0A7C7PYM1_9PROT (Uncharacterized protein n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A7C7PYM1_9PROT) HSP 1 Score: 290 bits (743), Expect = 8.620e-98 Identity = 136/191 (71.20%), Postives = 158/191 (82.72%), Query Frame = 1
Query: 16 SGDPLETARQALEPGETLVWADRPSPEAFARTKVPQVIRGVLGLAVIAGLHWYGYVPDWRIGGQHALLFGFLIAASAYCLVLIFSPNIAKISARSMVYAVTDRRIMILSLWPFRRSRVFLPGEIDAPRTMATEAGQGVVVFMEQKLPWWKRSAGGSYQIEAFYGIADAPMVAEAIEKLKGPHEASPFEDED 588
+ DPL ARQ LEPGETLVWADRP P+A ARTK+PQVIRG LGLAVIAGL+WYGYVPD+R ++AL+F FL+AA YCL L+ +P IAK+SA MVYAVT RR+MILSLWPFR RVFLP E+D PR +A +G+G VVF+E+KLPWWKRSAGGSYQIEAFYGIADAP VA I +L+GP E SPF+DED
Sbjct: 5 TNDPLSVARQELEPGETLVWADRPRPDALARTKLPQVIRGALGLAVIAGLYWYGYVPDFRASAENALMFAFLVAAGLYCLALVVAPQIAKVSAGRMVYAVTSRRVMILSLWPFRSRRVFLPAELDEPRALADASGEGAVVFVERKLPWWKRSAGGSYQIEAFYGIADAPRVAAEIARLRGPAEISPFDDED 195
BLAST of mRNA_Ecto-sp13_S_contig56722.16033.1 vs. uniprot
Match: UPI00187285D6 (hypothetical protein n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI00187285D6) HSP 1 Score: 210 bits (535), Expect = 3.830e-66 Identity = 103/188 (54.79%), Postives = 128/188 (68.09%), Query Frame = 1
Query: 28 LETARQALEPGETLVWADRPSPEAFARTKVPQVIRGVLGLAVIAGLHWYGYVPDWRIGGQHALLFGFLIAASAYCLVLIFSPNIAKISARSMVYAVTDRRIMILSLWPFRRSRVFLPGEIDAPRTMATEAGQGVVVFMEQKLPWWKRSAGGSYQIEAFYGIADAPMVAEAIEKLKG-PHEASPFEDED 588
LE AR L P ETLVWADRP P+ AR K+PQVIRG LGL VIAG W ++P+W GG+ LL F++AA YCL L+ +P A+ +A +YAVTDRR+++ WP RR R F PGE+D P A G G VVFM++KLPWW+RSAGG ++EAFYGI A VAE I++L+G P S F DED
Sbjct: 8 LEAARALLAPDETLVWADRPDPQVLARAKLPQVIRGALGLVVIAGFFWLSFLPNWPEGGRGLLLALFVLAAGLYCLWLLAAPLTARRAAARTLYAVTDRRVLVQETWPLRRLRSFAPGELDEPLVSAAGPGLGTVVFMDRKLPWWQRSAGGGTRVEAFYGIPGAQQVAEEIDRLRGAPEPTSDFPDED 195
BLAST of mRNA_Ecto-sp13_S_contig56722.16033.1 vs. uniprot
Match: A0A843RGW8_9PROT (Uncharacterized protein n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A843RGW8_9PROT) HSP 1 Score: 206 bits (524), Expect = 1.910e-64 Identity = 101/183 (55.19%), Postives = 128/183 (69.95%), Query Frame = 1
Query: 16 SGDPLETARQALEPGETLVWADRPSPEAFARTKVPQVIRGVLGLAVIAGLHWYGYVPDWRIGGQHALLFGFLIAASAYCLVLIFSPNIAKISARSMVYAVTDRRIMILSLWPFRRSRVFLPGEID----APRTMATEAGQGVVVFMEQKLPWWKRSAGGSYQIEAFYGIADAPMVAEAIEKLK 552
+ DPLE AR LEPGETLVWADRP P+ AR ++PQVIRG+LG+AVI G W +VP+W G + LL FL A Y L L+ +P +A+ +A VYAVTDRR+++L WPF+R R F P +D AP T + +G VVF+ +KLPWW+RSAGGSY+IEAFYGIA+A VAE IE L+
Sbjct: 4 ASDPLEAARAVLEPGETLVWADRPDPQVLARARLPQVIRGLLGVAVIVGFLWLSFVPNWPGGLRGLLLTVFLAVAMLYSLWLLAAPWVARRAAGRTVYAVTDRRVLVLEDWPFKRQRAFAPAALDDTLVAPATPSQRGDRGTVVFVSRKLPWWQRSAGGSYRIEAFYGIAEAQQVAERIESLR 186
BLAST of mRNA_Ecto-sp13_S_contig56722.16033.1 vs. uniprot
Match: A0A843RGD4_9PROT (Uncharacterized protein n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A843RGD4_9PROT) HSP 1 Score: 82.0 bits (201), Expect = 8.610e-16 Identity = 65/207 (31.40%), Postives = 88/207 (42.51%), Query Frame = 1
Query: 31 ETARQALEPGETLVWADRPSPEAFARTKVPQVIRGVLGLAVIAGLH---WYGYVPD-----WRIGGQHALLFGFLIAASAYCLVLIFSPNIAKISARSMVYAVTDRRIMILSLWPFRRSRVFLPGEIDAPRTMATEAGQGVVVFMEQK---LPW----------------------WKRSAGGSYQIEAFYGIADAPMVAEAIEKLK 552
E A L P ETLVWA RP A AR+K A LH W+ + D W +G L+ G L A CLV+ S + + +R +VYAVTDRR++I+ WP R R +P + G+G V+F ++ LPW W S G +I F+GI A VA I +L+
Sbjct: 6 EVAGSRLAPAETLVWAGRPGAWALARSKFAGTRLPSYLFAAFVLLHFILWFHVLADEIAGAWSVGN---LIVGILAA----CLVIALSLLLVALFSRWVVYAVTDRRVLIIRTWPVERCRSAMPSTLHRIVLRTDADGRGDVIFNKRTWYDLPWMKMKPSLPARWMGGPPFPPRWEWPVSMSGDEEILGFFGIRGAREVAGEIGRLR 205
BLAST of mRNA_Ecto-sp13_S_contig56722.16033.1 vs. uniprot
Match: A0A1V4XKI8_9DELT (Uncharacterized protein n=1 Tax=Syntrophaceae bacterium PtaB.Bin095 TaxID=1811717 RepID=A0A1V4XKI8_9DELT) HSP 1 Score: 58.9 bits (141), Expect = 2.110e-7 Identity = 51/192 (26.56%), Postives = 82/192 (42.71%), Query Frame = 1
Query: 16 SGDPLETARQALEPGETLVWADRPSPEAFARTKVPQVIRGVLGLAVIAGLHW----YGY-VPDWRIGGQHAL--LFGFLIAASAYCLVLIFSPNIAKISARSMVYAVTDRRIMILSLWPFRRSRVFLPGEIDAPRTMATEAGQGVVVFMEQKLPWWKRSAGGSYQIE-----AFYGIADAPMVAEAIEKLKG 555
+G A+ L+P E L+W+ RP P A +P I G+ +A+ L+W +G+ +PD+ +FGFL LVL P +A A VYA+TDRR +I++ F +I + + + G G +VF ++G + + FYGI + E + G
Sbjct: 6 NGKAQRIAKSVLQPEERLLWSGRPDPRRVALQTLPVFILGLPWIAI--ALYWTAASFGFQMPDFNAQNLIGFWPVFGFLFILMG--LVLTALPGLAYRRANRTVYAITDRRCLIITAGDRTYIEAFGEEDIGSVKRIERRNGTGDLVFTAS-------ASGAAKDVSRVRKAVFYGIPEIRQAEETARRAFG 186
BLAST of mRNA_Ecto-sp13_S_contig56722.16033.1 vs. uniprot
Match: A0A2S8ST93_9BACT (Uncharacterized protein n=1 Tax=Abditibacterium utsteinense TaxID=1960156 RepID=A0A2S8ST93_9BACT) HSP 1 Score: 57.8 bits (138), Expect = 4.880e-7 Identity = 55/175 (31.43%), Postives = 81/175 (46.29%), Query Frame = 1
Query: 49 LEPGETLVWADRPSPEAFARTKVPQVIRGVL--GLAV--IAGLHWY------GYVPDWRIGGQHALLFGFLIAASAYCLVLIFSPNIAKISARSMVYAVTDRRIMILSLWPFRRSRVFLPGEIDAPRTMATEAGQGVVVFMEQKLPWWKRSAGGSYQIE-AFYGIADAPMVAEAI 540
L+ GETL+W+ PSP + A + I GV G A+ ++G +W G+ P G LFG + + LVL N AK A +YAVTDRR++I+ + FLP +I+ R G V+F + + S G Y++E F+GI + V I
Sbjct: 11 LDAGETLLWSGAPSPTSAASRGIVPSIVGVFMTGFALFWMSGAYWVTSQAPRGFGPP---GASLFPLFGLIFVFAGLALVLTPFFNSAK--ATRTIYAVTDRRLLIIE---GENVQSFLPADIE--RLQRRGESSGDVIFAREMR---RGSKGRRYEVEIGFFGIQNPREVERLI 172
BLAST of mRNA_Ecto-sp13_S_contig56722.16033.1 vs. uniprot
Match: A0A2W4ER23_9HYPH (Uncharacterized protein n=2 Tax=Rhizobium tubonense TaxID=484088 RepID=A0A2W4ER23_9HYPH) HSP 1 Score: 56.2 bits (134), Expect = 2.290e-6 Identity = 52/182 (28.57%), Postives = 83/182 (45.60%), Query Frame = 1
Query: 22 DPLETARQALEPGETLVWADRPSPEAFARTKVPQVIRGVLGLAVIAGLHWYGYVPDWR--IGGQHALLFGFLIAASAYCLV--LIFSPNIAK-ISARSMVYAVTDRRIMILSLWPFRRSRVFLPGEIDAPRTMATEAGQGVVVFMEQKLPWWKRSAGGSYQIEAFYGIADAPMVAEAIEKLK 552
+P L+PGE + W+ RP+ T + ++ G++ A AG +P + I G+ + +S + ++ LI +A ++ R YAVT+RR++I+S +R F P I+A + G G VVF + K S G S AF GI D A IE+L+
Sbjct: 7 NPAMAINAELQPGEAVRWSGRPTFFPMLLTHLMSIVFGIVFAAFGAG----PVIPVAKALIAGESPEGIWPALFSSVFFVIGCLIIGKALADTVATRWTAYAVTNRRVLIVSNLIRKRVLSFGPSAINAVDVTESSGGSGTVVFRHEIT---KSSDGDSTLKMAFVGIEDVGNAAREIEQLR 181
BLAST of mRNA_Ecto-sp13_S_contig56722.16033.1 vs. uniprot
Match: A0A4T3FDQ4_9HYPH (bPH_2 domain-containing protein n=1 Tax=Rhizobium sp. P44RR-XXIV TaxID=1921145 RepID=A0A4T3FDQ4_9HYPH) HSP 1 Score: 54.7 bits (130), Expect = 7.050e-6 Identity = 52/178 (29.21%), Postives = 79/178 (44.38%), Query Frame = 1
Query: 49 LEPGETLVWADRPS-PEAFARTKVPQVIRGV-LGLAV-----IAGLHWYGYVPD--W-RIGGQHALLFGFLIAASAYCLVLIFSPNIAKISARSMVYAVTDRRIMILSLWPFRRSRVFLPGEIDAPRTMATEAGQGVVVFMEQKLPWWKRSAGGSYQIEAFYGIADAPMVAEAIEKLK 552
L+PGE + W +P+ R+ + VI G+ +G+ + + W G P W + ++FGF+ A A+ + I+ YAVT+RR++I+S +R P I+A T G G VVF + K G S AF GI+DA A IE L+
Sbjct: 16 LQPGEMVRWTGKPTFIPMLTRSGMTLVIGGMFVGIGIQPVLPVVQSIWLGEPPSDVWPALFSGIFVIFGFVAVAKAF---------LDAIATSRTTYAVTNRRVLIVSNLLRKRVLTVGPAGINAVETTEKFDGSGTVVFRREVS---KDPEGDSISKLAFVGISDAANAAREIETLR 181
BLAST of mRNA_Ecto-sp13_S_contig56722.16033.1 vs. uniprot
Match: A0A1E5Q2R2_9PROT (Uncharacterized protein n=2 Tax=Magnetovibrio blakemorei TaxID=28181 RepID=A0A1E5Q2R2_9PROT) HSP 1 Score: 54.7 bits (130), Expect = 1.200e-5 Identity = 52/192 (27.08%), Postives = 86/192 (44.79%), Query Frame = 1
Query: 13 MSGDPLETARQALEPGETLVWADRPSPEAFARTKVPQVIRGV--LGLAVIAGLHWYGYV-PDWRIGGQHALLFGFLIAASAYC----LVLIFSPNIAKISARSMVYAVTDRRIMILSLWPFRRSRVFLPGEIDAPRTMATEAGQGVVVFMEQKLPWWKRSAGGSYQIEAFYGIADAPMVAEAIEKLKGPHEA 567
MS P+E L+ GE L+W+ +P+PE A V+ G+ + A+I W+ V + IG ++ + + + L + I A M+YAVT++R+MI+ L+P + F ++ + G G ++F LP K++ +Y FYGI +AE LK P A
Sbjct: 1 MSATPIE---DQLKNGEKLIWSGKPNPEELAGAHAGAVLMGIACISFAII----WHQVVFQNVTIGATGIVMDSVQVVTWLFAGLGSIFLSIPLFVYLIGAHYMLYAVTNKRLMIIRLFPTASVQSFPINDVFQVNSTVLY-GMGNLLF---DLPGVKQNHLQAYP--GFYGIPSPLRIAEVFNTLKHPEHA 179 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56722.16033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig56722.16033.1 >prot_Ecto-sp13_S_contig56722.16033.1 ID=prot_Ecto-sp13_S_contig56722.16033.1|Name=mRNA_Ecto-sp13_S_contig56722.16033.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=193bp MSGDPLETARQALEPGETLVWADRPSPEAFARTKVPQVIRGVLGLAVIAGback to top mRNA from alignment at Ecto-sp13_S_contig56722:77..667+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig56722.16033.1 ID=mRNA_Ecto-sp13_S_contig56722.16033.1|Name=mRNA_Ecto-sp13_S_contig56722.16033.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56722:77..667+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56722:77..667+ >mRNA_Ecto-sp13_S_contig56722.16033.1 ID=mRNA_Ecto-sp13_S_contig56722.16033.1|Name=mRNA_Ecto-sp13_S_contig56722.16033.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=579bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56722:77..667+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |