mRNA_Ecto-sp13_S_contig56676.16028.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56676.16028.1
Unique NamemRNA_Ecto-sp13_S_contig56676.16028.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig56676.16028.1 vs. uniprot
Match: Q8QNN7_ESV1K (EsV-1-24 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNN7_ESV1K)

HSP 1 Score: 277 bits (709), Expect = 2.560e-88
Identity = 157/275 (57.09%), Postives = 174/275 (63.27%), Query Frame = -1 
Query:    3 LRKKTITQEVCTGRIHLVTVVLNDVLHDRQRRYVGSGISFPSRNVVCHLQCGHRSLAFTKCLGHSAKNVFEVVRYPIRSVGFRVTVCVGLQRCCLHSLVSSRFPLPLLXXXXXXXX-----------LFHRISGGRQDDTKPLL-------------------------------------------------LHCACNLHVIAGARETRSLSTMSRWADSLKHTRLGHQLATFRQSIRIFQQLLHHLERSVPLPQYFAA*LVGYDGVGETELHC 647
            LRKK+  QEVCTGRIHLV +VL+DVLHDRQRRYVGSG+S PS NVVCHL+ GHRSLAFTKCL HSAKNVF+VVRYP+ S+GFRV+VC GL+RCCLH LV   FP P L  XXXXXX           LFHRI GGR+ +    L                                                 LH A  L V  G RETR+ STMSRW D LKHTRL H+LATFRQ++RIFQQ+ HHLERSV LPQYFAA LVG D  GE ELHC
Sbjct:   16 LRKKSTAQEVCTGRIHLVIMVLDDVLHDRQRRYVGSGVSIPSGNVVCHLRHGHRSLAFTKCLDHSAKNVFKVVRYPVSSIGFRVSVCAGLRRCCLHFLVFIEFPRPRLLIXXXXXXXXXXXXXXXXXLFHRIFGGRKQNAPSFLXXXXXXXXXXXXXXXXXXXXXXXWGRQKALGFFFFLRISGGSQDDEMFALHYARYLRVFPGVRETRTPSTMSRWTDGLKHTRLDHELATFRQAVRIFQQVPHHLERSVALPQYFAACLVGDDRFGEKELHC 290
[Close]
BLAST of mRNA_Ecto-sp13_S_contig56676.16028.1 vs. uniprot
Match: D8LP61_ECTSI (EsV-1-24 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP61_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 9.790e-36
Identity = 80/118 (67.80%), Postives = 91/118 (77.12%), Query Frame = -1 
Query:  249 VVLNDVLHDRQRRYVGSGISFPSRNVVCHLQCGHRSLAFTKCLGHSAKNVFEVVRYPIRSVGFRVTVCVGLQRCCLHSLVSSRFP----LPLLXXXXXXXXLFHRISGGRQDDTKPLL 590
            +V++DVLHDRQRRYVGSGIS PSRNVVCHL+ GHR+LAFTKCL H A+NV +VVR PI S+GFRV+VC GL R CLH LV  +FP    L   XXXXXXXX FH ISGGRQ +    L
Sbjct:    1 MVIDDVLHDRQRRYVGSGISIPSRNVVCHLRDGHRTLAFTKCLDHGAQNVLKVVRNPISSIGFRVSVCTGLCRRCLHFLVFIKFPHTRLLXXXXXXXXXXXXFHGISGGRQQNASGFL 118
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56676.16028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QNN7_ESV1K2.560e-8857.09EsV-1-24 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D8LP61_ECTSI9.790e-3667.80EsV-1-24 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56676contigEcto-sp13_S_contig56676:193..839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size647
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-24
Ec32 orthologEc-06_006510.1
Cds size642
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463784.861529-UTR-Ecto-sp13_S_contig56676:192..1971681463784.861529-UTR-Ecto-sp13_S_contig56676:192..197Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig56676 193..197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463784.8740408-CDS-Ecto-sp13_S_contig56676:197..8391681463784.8740408-CDS-Ecto-sp13_S_contig56676:197..839Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56676 198..839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56676.16028.1prot_Ecto-sp13_S_contig56676.16028.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56676 198..839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56676.16028.1

>prot_Ecto-sp13_S_contig56676.16028.1 ID=prot_Ecto-sp13_S_contig56676.16028.1|Name=mRNA_Ecto-sp13_S_contig56676.16028.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=214bp
MQLRLTNAIVADQSCREILRQGNTPLQVMKELLKDANRLPEGGELVAKSG
VLEAVGPTGHSRKGTCLACTGDHMEVTRTVKQKRLGVVLSPTGDAMEEEE
EEKEEKEEGEREPAGNEGMETASLEADADGDPEPDAAYWVSNHLEDILGT
MAQALRERKTSMTTLQMADDIPGREGYPTTNVPSLSIVQYIIKHHCDEMD
AAGAYFLGNSFLP*
back to top

mRNA from alignment at Ecto-sp13_S_contig56676:193..839+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56676.16028.1 ID=mRNA_Ecto-sp13_S_contig56676.16028.1|Name=mRNA_Ecto-sp13_S_contig56676.16028.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=647bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56676:193..839+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCAATGCAGCTCCGTCTCACCAACGCCATCGTAGCCGACCAATCATGC
CGCGAAATACTGAGGCAAGGGAACACTCCTCTCCAGGTGATGAAGGAGTT
GCTGAAAGATGCGAATAGATTGCCGGAAGGTGGCGAGTTGGTGGCCAAGT
CGGGTGTGCTTGAGGCTGTCGGCCCAACGGGACATAGTCGAAAGGGAACG
TGTCTCGCGTGCACCGGCGATCACATGGAGGTTACACGCACAGTGAAGCA
GAAGCGGCTTGGTGTCGTCCTGTCTCCCACCGGAGATGCGATGGAAGAGG
AAGAGGAGGAGAAGGAGGAAAAGGAGGAGGGGGAGCGGGAACCTGCTGGA
AACGAGGGAATGGAGACAGCATCGTTGGAGGCCGACGCAGACGGTGACCC
TGAACCCGACGCTGCGTATTGGGTATCGAACCACCTCGAAGACATTCTTG
GCACTATGGCCCAGGCACTTCGTGAACGCAAGACTTCGATGACCACATTG
CAGATGGCAGACGACATTCCTGGAAGGGAAGGATATCCCACTACCAACGT
ACCGTCGCTGTCGATCGTGCAGTACATCATTAAGCACCACTGTGACGAGA
TGGATGCGGCCGGTGCATACTTCTTGGGTAATAGTTTTCTTCCGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56676:193..839+

>mRNA_Ecto-sp13_S_contig56676.16028.1 ID=mRNA_Ecto-sp13_S_contig56676.16028.1|Name=mRNA_Ecto-sp13_S_contig56676.16028.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=642bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56676:193..839+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCTCCGTCTCACCAACGCCATCGTAGCCGACCAATCATGCCGCGA
AATACTGAGGCAAGGGAACACTCCTCTCCAGGTGATGAAGGAGTTGCTGA
AAGATGCGAATAGATTGCCGGAAGGTGGCGAGTTGGTGGCCAAGTCGGGT
GTGCTTGAGGCTGTCGGCCCAACGGGACATAGTCGAAAGGGAACGTGTCT
CGCGTGCACCGGCGATCACATGGAGGTTACACGCACAGTGAAGCAGAAGC
GGCTTGGTGTCGTCCTGTCTCCCACCGGAGATGCGATGGAAGAGGAAGAG
GAGGAGAAGGAGGAAAAGGAGGAGGGGGAGCGGGAACCTGCTGGAAACGA
GGGAATGGAGACAGCATCGTTGGAGGCCGACGCAGACGGTGACCCTGAAC
CCGACGCTGCGTATTGGGTATCGAACCACCTCGAAGACATTCTTGGCACT
ATGGCCCAGGCACTTCGTGAACGCAAGACTTCGATGACCACATTGCAGAT
GGCAGACGACATTCCTGGAAGGGAAGGATATCCCACTACCAACGTACCGT
CGCTGTCGATCGTGCAGTACATCATTAAGCACCACTGTGACGAGATGGAT
GCGGCCGGTGCATACTTCTTGGGTAATAGTTTTCTTCCGTAG
back to top