mRNA_Ecto-sp13_S_contig5667.16027.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5667.16027.1
Unique NamemRNA_Ecto-sp13_S_contig5667.16027.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5667.16027.1 vs. uniprot
Match: D7FI26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI26_ECTSI)

HSP 1 Score: 441 bits (1133), Expect = 1.560e-150
Identity = 364/397 (91.69%), Postives = 368/397 (92.70%), Query Frame = 1 
Query:   76 MGDDLGDDWGVEGLDSGDEGTSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNTLAGRKRGRSQLSPEGFEETDSSEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGA----AVTNTVEEEAEELWARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTTLKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALATAGSLRLDSSALVVLDLEKNVKGRNVLDMDGVSGDTMAFLSDCVRPHLVSVSSGXXXXXXXXXXXXXXX-------PQGKGAATGQL-RIALY 1230
            MGDDLGDDWGVEGLDSGDEGTSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   LAGRKRGRSQLSPEGFEETDSS+GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX        GA    AVTNTVEEEAEELWARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHT +KLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVC GARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALA AGSLRLDSSALV+LDLEKNVKGR+VLDMDGVSGDTMAFLSDCVRPHLVS  SGXXXXXXXXXXXXXXX       PQ KGAATGQL RIALY
Sbjct:    1 MGDDLGDDWGVEGLDSGDEGTSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---LAGRKRGRSQLSPEGFEETDSSDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTGDGGERGAKTAAAVTNTVEEEAEELWARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTAMKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCTGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALAAAGSLRLDSSALVILDLEKNVKGRSVLDMDGVSGDTMAFLSDCVRPHLVSAPSGXXXXXXXXXXXXXXXXXXXXXXPQEKGAATGQLLRIALY 394
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5667.16027.1 vs. uniprot
Match: A0A835YSW0_9STRA (U3-containing 90S pre-ribosomal complex subunit-domain containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSW0_9STRA)

HSP 1 Score: 171 bits (432), Expect = 6.110e-46
Identity = 96/213 (45.07%), Postives = 129/213 (60.56%), Query Frame = 1 
Query:  559 TVEEEAEELWARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTTLKLVGFIKASLPDWKKRI-----QNRNSNA--------PRG-----------SPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALATAGSLRLDSSALVVLDLEKNVKGRNVLDMDGVSGDTMAFLSDCVRPHLVS 1125
            T ++ A+ +W R C V G  +  +EL  PW+ A  +A +E FGAHT  KL G+IKA+LP+W+        ++R S          PRG           SP ++IVC+GARRC+EV+K L+ FRCQV+KLFAKHLK  EQ  MLR+  FP+ VGTPGR+  LA  G++ L  + L++LD  ++ KGR+VLDM G   D    L   VRPHL S
Sbjct:  122 TAQQAADAVWERCCAVLGPQLAEIELLTPWVEAEDMAVLEQFGAHTIAKLPGYIKATLPNWRALTAAAPAKDRGSGGAVKWGAGKPRGGGAKPPAPGAGSPPIVIVCSGARRCMEVIKALSPFRCQVLKLFAKHLKPAEQAKMLRR-YFPIAVGTPGRVLKLAAEGAVALGGTQLLLLDAARDAKGRSVLDMAGAREDLCELLRAHVRPHLRS 333
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5667.16027.1 vs. uniprot
Match: A0A7S3XUU3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUU3_HETAK)

HSP 1 Score: 142 bits (357), Expect = 1.570e-36
Identity = 82/185 (44.32%), Postives = 111/185 (60.00%), Query Frame = 1 
Query:  586 WARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTTLKLVGFIKASLPDWKKRIQ---------NRNSNAP--RGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALATAGSLRLDSSALVVLDLEKNVKGRNVLDMDGVSGDTMAFLSDCV 1107
            WA++  V G  +T LEL    +  G+   V    A     LV F+KA +P WK ++Q          R + AP  RGSP VL+VCAGARRCV ++K L  FRC V KLFAKH+KI+EQ+ +L+K C P+ VGTP R+  LA  G L L+S+ L++ D+ K+VK   +LD++GV  D M F    V
Sbjct:   12 WAKYVGVMGGKLTDLELRPENVPEGAFLPV----AAPPEPLVDFVKAHVPGWKVKLQLAKGQNRKFARAAAAPQARGSPRVLVVCAGARRCVALLKGLAVFRCPVAKLFAKHMKIQEQQKLLKK-CAPIAVGTPSRLLKLAQFGDLCLESTELIIFDMGKDVKQMTILDVNGVKEDLMDFFKTTV 191
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5667.16027.1 vs. uniprot
Match: A0A067BQF7_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BQF7_SAPPC)

HSP 1 Score: 117 bits (293), Expect = 1.280e-26
Identity = 66/176 (37.50%), Postives = 103/176 (58.52%), Query Frame = 1 
Query:  595 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTTLKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALATAGSLRLDSSALVVLDLEKNVKGRNVLDMDGVSGDTMAFLSDCVRPHLV 1122
            + K  GD +TP E+    +T      ++ FG HT      F++A  P+WK   + +     R SP +LIVC+ A R VE+ K + +F+C V KLFAKHLK+EEQ  ML++   P+ +GTPGR++ L    +L L+ ++ VVLD+  + K  ++L++   S DT+    DC+R  L+
Sbjct:   92 YMKHYGDSLTPAEIA-DGLTESHFTVLKQFGKHTLESYTRFLRALCPEWKFLFRGKGIKDKR-SPLLLIVCSSALRAVEIGKAIASFKCHVAKLFAKHLKLEEQVEMLKR-FHPIAIGTPGRIKTLLEMKALSLECTSHVVLDMHLDSKNMSLLELKDTSKDTI----DCIRESLL 260
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5667.16027.1 vs. uniprot
Match: A0A2D4C5F1_PYTIN (Ubiquitin-specific protease, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5F1_PYTIN)

HSP 1 Score: 117 bits (292), Expect = 3.320e-26
Identity = 64/175 (36.57%), Postives = 98/175 (56.00%), Query Frame = 1 
Query:  595 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTTLKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALATAGSLRLDSSALVVLDLEKNVKGRNVLDMDGVSGDTMAFLSDCVRPHL 1119
            + K RG  +T LE+    +T       +G G HT   L  +++  +P WK   + +     + SP  LIVC+ A R VEV+KHL++FRC+V KLFA+H+K +EQ+  L     P+ VGTP R++ L    ++ L  ++ V+LD+ K+ K   +LD+   S DTM  L   + P L
Sbjct:  121 YIKHRGGQLTTLEIA-EGLTEHHFVAPKGLGKHTLQSLPLYMRHCVPTWKHDFRGKKIKYDK-SPIFLIVCSSALRAVEVLKHLSSFRCKVAKLFARHMKAKEQEDQLTLHFHPIAVGTPARLKKLLEMDAMSLQHTSHVILDMAKDKKNMTILDLKDTSKDTMELLQFYLLPRL 293
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5667.16027.1 vs. uniprot
Match: A0A6A3I4I1_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3I4I1_9STRA)

HSP 1 Score: 115 bits (288), Expect = 8.560e-26
Identity = 66/175 (37.71%), Postives = 95/175 (54.29%), Query Frame = 1 
Query:  595 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTTLKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALATAGSLRLDSSALVVLDLEKNVKGRNVLDMDGVSGDTMAFLSDCVRPHL 1119
            + K RG  +T LEL    +T       +G G H   +L  +I   LP +KK    +     + SP  LI+C+ A RCV+V+KHLT F+C+V KLFAKHLK++EQ   L     P+ VGTP R++ L   G+L L  +  V+ D+EK+ K   VL++   + + M  L     P L
Sbjct:  102 YTKHRGGQMTSLELA-DGLTETHFVAPKGLGKHRLDRLPAYIHQLLPSFKKDFVGKGKRRDK-SPYFLILCSSALRCVDVIKHLTPFKCRVAKLFAKHLKVDEQAKQLANMYLPIAVGTPARVKKLLEMGALSLKHTTHVIFDMEKDKKQLTVLELKDTATEMMDLLQFYFTPLL 274
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5667.16027.1 vs. uniprot
Match: A0A6S7HKP8_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HKP8_PARCT)

HSP 1 Score: 110 bits (275), Expect = 6.190e-24
Identity = 65/196 (33.16%), Postives = 102/196 (52.04%), Query Frame = 1 
Query:  550 VTNTVEEEA--EELWARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTTLKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFR--CQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALATAGSLRLDSSALVVLDLE-KNVKGRNVLDMDGVSGDTMAFLSDC--VRPH 1116
            V  T++ E+  E  WA FCK   D +T LEL+   +                  L  +++  LP W   I   +S    G+P +LI+ A A R  ++++  + FR  C+V+KLF+KH+K+EEQ+  L K    LGVGTP R+  L  +G+L+L +   V+LD   ++ K R ++D+  +  D +  L D   VR H
Sbjct:   86 VEKTIDGESISETFWASFCKATEDKLTALELEDLTVEDEMFLTEPSVHTGQLQSLSPYLRVVLPSWSNLITKIDSKGANGAPGLLIITAAATRATDIVRATSEFRSTCKVIKLFSKHIKLEEQESYLEKNVVHLGVGTPNRICKLIKSGALKLSNLKSVILDWTWRDAKQRRLMDIPEIKQDLVTLLKDIILVRAH 281
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5667.16027.1 vs. uniprot
Match: A0A8K1CKQ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CKQ2_PYTOL)

HSP 1 Score: 109 bits (273), Expect = 1.200e-23
Identity = 59/175 (33.71%), Postives = 95/175 (54.29%), Query Frame = 1 
Query:  595 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTTLKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALATAGSLRLDSSALVVLDLEKNVKGRNVLDMDGVSGDTMAFLSDCVRPHL 1119
            + K RG  +T LEL    +         G G HT   L  +++   P WK   + +     + S   L++C+ A R VEV+KH  +F+C+V KLFAKH+K+E+Q++ L K   P+ VGTPGR++ L    +L L+ +  V +D+EK+ K   +L++   + + M  L   + P L
Sbjct:  109 YIKQRGGQMTTLELA-EGLAESHFVAPAGLGKHTLPNLSLYMRHLRPAWKVDFKGKGKKYDK-STYFLVICSSALRAVEVLKHFGSFKCKVAKLFAKHMKVEDQEIQLAKTFNPISVGTPGRIKKLLEINALSLEHTTHVFIDMEKDKKAMTLLELKDTAKEMMELLQFHLLPQL 281
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5667.16027.1 vs. uniprot
Match: A0A8J5M5A2_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A8J5M5A2_9STRA)

HSP 1 Score: 112 bits (281), Expect = 4.440e-23
Identity = 66/185 (35.68%), Postives = 96/185 (51.89%), Query Frame = 1 
Query:  565 EEEAEELWARFCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTTLKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALATAGSLRLDSSALVVLDLEKNVKGRNVLDMDGVSGDTMAFLSDCVRPHL 1119
            +E  E +   + K RG  +T LEL    +        +G G H    L  +I   LP +K+    +     + SP  LI+C+ A RCVEV+KHLT F+C+V KLFAKH+K +EQ   L     P+ VGTP R++ L    +L L  +  V+ D+EK+ K   VL++   + + M  L     PHL
Sbjct: 1256 DEHFEIVNNAYIKHRGGQMTSLELA-DGLNESHFVAPKGLGKHKLELLPSYIHHLLPSFKRDFVGKGKRRDK-SPYFLILCSSALRCVEVIKHLTPFKCRVAKLFAKHMKADEQAKQLANNYLPIAVGTPARVKKLLEMNALSLKHTTHVIFDMEKDKKQLTVLELKDTATEMMDLLQFHFIPHL 1438
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5667.16027.1 vs. uniprot
Match: A0A484E346_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E346_BRELC)

HSP 1 Score: 107 bits (266), Expect = 8.470e-23
Identity = 61/175 (34.86%), Postives = 93/175 (53.14%), Query Frame = 1 
Query:  595 FCKVRGDLVTPLELDFPWITAGSLARVEGFGAHTTLKLVGFIKASLPDWKKRIQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIEEQKVMLRKGCFPLGVGTPGRMRALATAGSLRLDSSALVVLDLEKNVKGRNVLDMDGVSGDTMAFLSDCVRPHL 1119
            + K RG  +T LEL         L   +G G H    L  +I   LP +K+    +     + SP  LI+C+ A RCV+V+K L +F+C+V KLFAKH+K +EQ   L +   P+ VGTP R++ L    +L L  +  V+ D++K+ K   VLD+   + + +  L   + PHL
Sbjct:   97 YTKHRGGQMTTLEL------VDGLNAPKGLGKHKVELLPAYIHHLLPSFKRDFIGKGIRRDK-SPIFLILCSSALRCVQVIKPLASFKCKVAKLFAKHMKADEQAKQLARNFLPIAVGTPARVKKLLETEALSLKHTTHVIFDMQKDKKQLTVLDLKDTASEMVDLLQFYLIPHL 264
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5667.16027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI26_ECTSI1.560e-15091.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YSW0_9STRA6.110e-4645.07U3-containing 90S pre-ribosomal complex subunit-do... [more]
A0A7S3XUU3_HETAK1.570e-3644.32Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A067BQF7_SAPPC1.280e-2637.50Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A2D4C5F1_PYTIN3.320e-2636.57Ubiquitin-specific protease, putative n=1 Tax=Pyth... [more]
A0A6A3I4I1_9STRA8.560e-2637.71Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A6S7HKP8_PARCT6.190e-2433.16Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A8K1CKQ2_PYTOL1.200e-2333.71Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8J5M5A2_9STRA4.440e-2335.68Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A484E346_BRELC8.470e-2334.86Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5667contigEcto-sp13_S_contig5667:2658..7139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score441.4
Seed ortholog evalue4.5e-121
Seed eggNOG ortholog2880.D7FI26
Preferred nameCMSS1
Model size1233
KEGG koko:K11858,ko:K14784
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0008150,GO:0022613,GO:0030684,GO:0030686,GO:0032991,GO:0042254,GO:0042274,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044424,GO:0044464,GO:0071840,GO:1990904
Exons6
EggNOG free text desc.U3-containing 90S pre-ribosomal complex subunit
EggNOG OGsKOG3089@1,KOG3089@2759
EC3.4.19.12
Cds size1233
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03009,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5667.16027.1prot_Ecto-sp13_S_contig5667.16027.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5667 2658..7139 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463784.770023-CDS-Ecto-sp13_S_contig5667:2657..29481681463784.770023-CDS-Ecto-sp13_S_contig5667:2657..2948Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5667 2658..2948 -
1681463784.7911305-CDS-Ecto-sp13_S_contig5667:3836..39471681463784.7911305-CDS-Ecto-sp13_S_contig5667:3836..3947Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5667 3837..3947 -
1681463784.8005567-CDS-Ecto-sp13_S_contig5667:4537..46441681463784.8005567-CDS-Ecto-sp13_S_contig5667:4537..4644Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5667 4538..4644 -
1681463784.8111188-CDS-Ecto-sp13_S_contig5667:5280..55631681463784.8111188-CDS-Ecto-sp13_S_contig5667:5280..5563Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5667 5281..5563 -
1681463784.8214567-CDS-Ecto-sp13_S_contig5667:5921..62021681463784.8214567-CDS-Ecto-sp13_S_contig5667:5921..6202Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5667 5922..6202 -
1681463784.8321352-CDS-Ecto-sp13_S_contig5667:6979..71391681463784.8321352-CDS-Ecto-sp13_S_contig5667:6979..7139Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5667 6980..7139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5667.16027.1

>prot_Ecto-sp13_S_contig5667.16027.1 ID=prot_Ecto-sp13_S_contig5667.16027.1|Name=mRNA_Ecto-sp13_S_contig5667.16027.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=411bp
CASNPAHGTPTAGAAAVAWESSSGSMGDDLGDDWGVEGLDSGDEGTSTAA
AAAAVAPKEATKKKNKTNDKKKKKKNDDSSSTTNTLAGRKRGRSQLSPEG
FEETDSSEGDGEEEEEQDEESRLKAVEEEEARLRRAEKKKQKLKAFKAKL
KEKKKQRSQDKSLAPAATKTRNGGGQGAKAGAAVTNTVEEEAEELWARFC
KVRGDLVTPLELDFPWITAGSLARVEGFGAHTTLKLVGFIKASLPDWKKR
IQNRNSNAPRGSPSVLIVCAGARRCVEVMKHLTAFRCQVVKLFAKHLKIE
EQKVMLRKGCFPLGVGTPGRMRALATAGSLRLDSSALVVLDLEKNVKGRN
VLDMDGVSGDTMAFLSDCVRPHLVSVSSGGGSGMKQKGGGGGGGPQGKGA
ATGQLRIALY*
back to top

mRNA from alignment at Ecto-sp13_S_contig5667:2658..7139-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5667.16027.1 ID=mRNA_Ecto-sp13_S_contig5667.16027.1|Name=mRNA_Ecto-sp13_S_contig5667.16027.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4482bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5667:2658..7139- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTGCGTCCAACCCGGCACACGGCACGCCGACAGCAGGAGCAGCTGCTGT
GGCGTGGGAGAGCTCGAGCGGAAGTATGGGAGACGACCTCGGTGATGATT
GGGGGGTGGAAGGGCTTGATTCCGGCGATGAAGGCACCTCCACGGCGGCT
GCCGCCGCGGGTAAGACGACGGCGGTGGCTGATGTTACCCGTATACCTTC
ACCACGAAAATGCGGCGCAACTCCACTCCTGTACTGCTGTTCTGCGCGGC
TCTCCCTGCTGTCGCTGCGGGCGTTGGCTGTGGCCAACGACAGCAGAGCT
CCCACTTAACAGCCGCCCCAAAATTTTTACGGCCATCCCTCTCAAGCATT
TCTGTCTCGAGCATCTCGTTCTACACGTATACCGCTCTAGGAGAGATCCG
CTGCGGTGCTTCACACCACATCCCCGCCCACCACACAACTCAACGTCTTC
TTTTGGCCGCATGTCGACCAAGACATGCAATGCCGTCAGAGCTGCAACCT
TGACACACCAGGCAACGTGGAGACTGGGTGTGACAGCGTCCAGCGTCGAC
CAAGATTTGGTGATGCAGTCTTTCCCTGTGCCCCTGCTGTGCGAGCCTCT
TGGATGCACACCTGGCTTGTGGACAGATGGCATGATGTTGTGGAGGTGGA
CTAACTGATGGACATAGCAGTTGTTGGTGCCCAAGCTTCTCATTTCTTCC
ACGCTAAACAGCTGCAACTTGACGTGAGGAAGATCCCCGCGCAACAACAG
CGGTACGAATTGCCTGCTTACACACAGGAAATCAACACCTGCTATATGAC
CTTGTAAAAGTGATGGATGGTAAGCATTAGCTCAAATACCCTGTCTTCAT
TTGCACCTCCCCCCCCCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTTCAC
CGGCTCCCTCCACCCCTTTCTCACGGCCTTTTGGCAGCAGTCGCGCCCAA
GGAAGCAACCAAGAAGAAAAACAAGACCAACGACAAGAAGAAGAAGAAGA
AAAACGACGACAGCAGCAGCACCACAAACACTCTCGCCGGGAGAAAGCGC
GGCAGGTCCCAGCTCAGCCCAGAGGGCTTCGAGGAGACGGACAGCAGCGA
GGGCGACGGGGAGGAGGAGGAGGAGCAGGACGAGGAGTCTAGGCTGAAGG
CGGTAGAGGAGGAAGAGGCGAGGCTCAGGCGCGCAGAGAAGAAGAAGCAG
AAGCTAAAGGCATTCAAGGTAAAGTTGTGGTATGCTGCGGCCTACGACTA
CACCGAAGCCGCAGAGGAAGTTAGTCGCCCCCAGACGCTGCCGCCGCCGC
CGCCGACGTGCCCAAGCTTTTCTTTTGCACGCGTTTAACTCATTCGTAAT
CACGTGATTGGGCGAGGAAAGGATACGACGATAGCAGGTAAAATCTCTCT
TTCTCCTTTCGCTTCAAATGAACGTGCTCCATGCTGCCGCTATGGCCTAC
TGCTGCGCTTTCTCTCATCGCTACATGTGAACATTTCCCCCCACTTGCCG
CTGCTGCCGCTGCTGCTGCCTTCCGTGTCACTCAACTTTTCGTCTTTTTC
TACGCTTGCCAACGATTCACCCGAAGGCGAAGTTGAAGGAGAAAAAGAAA
CAAAGATCCCAGGACAAATCGCTGGCGCCGGCGGCGACCAAAACCAGGAA
TGGGGGGGGACAGGGGGCAAAAGCTGGGGCAGCGGTGACCAACACCGTCG
AGGAGGAGGCCGAAGAGCTGTGGGCCAGGTTTTGCAAGGTCCGCGGGGAC
CTAGTGACCCCGCTGGAGCTCGACTTTCCGTGGATCACCGCTGGGTCGCT
TGCTCGGGTCGAAGGGTTCGGGGCGCACACCACTTTGAAGCTCGTCGGGT
TCATCAAGGGTGCGCTTTTTCTTGCTCTGCCTGCTTTGCTTCACTTTGCT
CTTCGTTGCTGCTATGTCTGTGTCTTAAGTGTCAGCGTCAACCGCGATGC
AATTCGGGTGACAATGAGAACATACATCAGTCTCAGTGCGGCTGCACACA
GGAAAAATGCGCGCTCGTGTGTGTACATGTTTCTTTGTGTTGGCGTCGAC
GGCGCTACAAAACAACAAACCAGGTGACCGATGTGAAACGTACGCCAGTA
TTGCTGTTGTTTGGTTGTAAGACTACTGCTGTAACCCGAGTACGCTGGCT
GTAGTATTGTCCGCGGATTCCCCCGATAGCAAGCAATGTGGCCGTGTATT
TTTTCTCGGCTCTTTCGTTCATGTACGTTCTCGCTCTCTCAGTGCCTGAA
CGGACCAGCGGTAAGCGTGCTGTGAATGCAGCACCTGTGTGCTCTGCTCT
TTCTTTTTCTTTAAGGACATGCGGATGGTGATAATGCTGTCTGAGCGCTT
GTCTGTCTCTCCACCTCTGTGTGTGTATGCGTGTTTTTTTTTTCCTTTCG
AGGCATACGAAACCGGATTGCCCTCGACCCTTCCCACCAACTCTTTTTTT
GCCCCCGCCTTCCTTCCTTCCCCCCATCGTCGTCCACATTCGCAGCGTCC
CTCCCAGACTGGAAGAAGAGAATACAAAACAGAAACAGCAATGCCCCCCG
AGGAAGCCCGTCGGTGCTCATCGTATGCGCGGGCGCGCGGCGCTGCGTCG
AGGTACAGTATATTTGATGTCCGTACACCGGGGGGTGTCATGGGCACGAT
GGGCATGGGGTTCACCACCCGAGTCTCTTGTGTAACAATGGCACTACTGT
TGAACGAGTTGCCTCCGTGGTCTTACGAAGAGAGGGGGGGAAAGAGTGTC
CGAGAGAAAAGGGGCGGGTGTGCGATTGCCATGCTCCTGCAGCCGAAGGT
CGACCAGATAACGGTACAGAAAGGACCCCCAAGGTAGGCAAACCGGCAGA
GCGGGCTACCCTAGTCACGACACGGCAGCGAGTGAAGCTTTCGGGGAGAG
GGGAGTGATGGGGATCGTTTTTATTCTTGTCAGAGGTGTGGTGGCAGAGA
CTTGTCTCTCGCTTTAAAAGCTTTGCCAGTAACCATCCGCCCATGCACCC
CCTTCTCCTCCGTTCATTCTTGTTTTTCATCCCTCGGAGCCCCTTGTCCC
CTTCAAACAAACGGCAAATACCCAGTGTTTTTTTTTGTTCCATTCTCCAC
CGCCTACCGCCTACGGTAGTCTTAGACTTAACCGCCTCCGACAAACCGAA
CTCTTCTGTTTTTCTTCGCTGCCTGTCTCTAACCTGCTATAGGTAATGAA
ACACCTGACGGCCTTTCGGTGCCAGGTGGTGAAGCTGTTTGCGAAGCACC
TCAAGATTGAGGAGCAGAAGGTCATGCTCAGGAAGGGATGTTTCCCCCTA
GGGGTAAGCACGCGGGCGTTTGTGAAGGGACGGAGGGTGGGGGGGATTGC
AAACAGCCCCTGGAACCCGGATTCGTCGGAAAGTTTCCACTGTCGACGTT
ATTCTCTTTCGTAAAATACGAGGGTTTCCGAGTAGACACCGACATATGCT
ACCGCAGGCACTGCGTGGTATTCATCTTGTGTGTAGGTTTTTTGCTGCGG
TATTTATCGCAAGGCACAGCAGCGGTTGGTGATCACAGAAAATCGATTGC
TGACGAACTTCCACGCAAGGATTAGGTAGGGTGTGTACCAACCAGCGCAC
GAGTCTCGGGCTTCACGTCCCTGTTATTCGTCCGCTTGACGCGCTTGTGT
GTGCCTTGTCCGTTTCTTCAGTAGGGGGGTCGGTGTAGTCGTGAGCGCTT
CACGATCGACACAAGAAACAGCCGTTTGTGTTGTTTTCGTACGATTTTCC
GACATGCATGATGGTGTACGGCGTAAAAGCATACCATATACTTTGGTTTT
GCGAACGCTCTCGAAATCGATCCTAGGTCCGGTTCAAGTGTCCTCGTTGT
TCTTCAATGCCTTTGCATTTCTCTCCTATTTTTGTACCATGTTTCTCGTG
TACATCTAAATTCTGACGTTGTTGCTGTTGTTGTTCTTTACTTCACGTTA
ACCTCTTGTCAGTTACTAATTCATCGCCTTATTATTTTGGTTGTTCTTTT
TCGTGTGATGCCGCCGTTTCGGACGTTTTTGGTAATTTCGACCAATCGAA
TGGTGTTCGCCTTACTATATTTCTTGTTCTTCAACGATGTATTTCTTGAG
ATGCATTTTCCGGTAGTGGCTTCCGTTTTCTTTTGTTTTGGGGGAATCGA
TCCGTGAAAAACCGGGCCCGCTGCTGCTGTTGCTCCCACAGGTTGGGACT
CCAGGGCGCATGCGCGCGCTCGCCACCGCCGGGTCTCTCCGCCTGGACTC
GTCGGCGCTGGTCGTCCTCGACCTCGAGAAGAACGTGAAGGGCAGGAACG
TGCTGGACATGGACGGGGTTTCCGGGGATACGATGGCGTTCCTCTCGGAC
TGCGTCCGCCCCCACCTGGTATCGGTATCCAGCGGCGGCGGCTCGGGAAT
GAAGCAGAAGGGTGGCGGCGGTGGTGGTGGTCCCCAGGGGAAAGGGGCTG
CGACGGGGCAGCTGAGGATAGCGCTGTACTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5667:2658..7139-

>mRNA_Ecto-sp13_S_contig5667.16027.1 ID=mRNA_Ecto-sp13_S_contig5667.16027.1|Name=mRNA_Ecto-sp13_S_contig5667.16027.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1233bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5667:2658..7139- (Ectocarpus species13 EcNAP12_S_4_19m)
TGTGCGTCCAACCCGGCACACGGCACGCCGACAGCAGGAGCAGCTGCTGT
GGCGTGGGAGAGCTCGAGCGGAAGTATGGGAGACGACCTCGGTGATGATT
GGGGGGTGGAAGGGCTTGATTCCGGCGATGAAGGCACCTCCACGGCGGCT
GCCGCCGCGGCAGTCGCGCCCAAGGAAGCAACCAAGAAGAAAAACAAGAC
CAACGACAAGAAGAAGAAGAAGAAAAACGACGACAGCAGCAGCACCACAA
ACACTCTCGCCGGGAGAAAGCGCGGCAGGTCCCAGCTCAGCCCAGAGGGC
TTCGAGGAGACGGACAGCAGCGAGGGCGACGGGGAGGAGGAGGAGGAGCA
GGACGAGGAGTCTAGGCTGAAGGCGGTAGAGGAGGAAGAGGCGAGGCTCA
GGCGCGCAGAGAAGAAGAAGCAGAAGCTAAAGGCATTCAAGGCGAAGTTG
AAGGAGAAAAAGAAACAAAGATCCCAGGACAAATCGCTGGCGCCGGCGGC
GACCAAAACCAGGAATGGGGGGGGACAGGGGGCAAAAGCTGGGGCAGCGG
TGACCAACACCGTCGAGGAGGAGGCCGAAGAGCTGTGGGCCAGGTTTTGC
AAGGTCCGCGGGGACCTAGTGACCCCGCTGGAGCTCGACTTTCCGTGGAT
CACCGCTGGGTCGCTTGCTCGGGTCGAAGGGTTCGGGGCGCACACCACTT
TGAAGCTCGTCGGGTTCATCAAGGCGTCCCTCCCAGACTGGAAGAAGAGA
ATACAAAACAGAAACAGCAATGCCCCCCGAGGAAGCCCGTCGGTGCTCAT
CGTATGCGCGGGCGCGCGGCGCTGCGTCGAGGTAATGAAACACCTGACGG
CCTTTCGGTGCCAGGTGGTGAAGCTGTTTGCGAAGCACCTCAAGATTGAG
GAGCAGAAGGTCATGCTCAGGAAGGGATGTTTCCCCCTAGGGGTTGGGAC
TCCAGGGCGCATGCGCGCGCTCGCCACCGCCGGGTCTCTCCGCCTGGACT
CGTCGGCGCTGGTCGTCCTCGACCTCGAGAAGAACGTGAAGGGCAGGAAC
GTGCTGGACATGGACGGGGTTTCCGGGGATACGATGGCGTTCCTCTCGGA
CTGCGTCCGCCCCCACCTGGTATCGGTATCCAGCGGCGGCGGCTCGGGAA
TGAAGCAGAAGGGTGGCGGCGGTGGTGGTGGTCCCCAGGGGAAAGGGGCT
GCGACGGGGCAGCTGAGGATAGCGCTGTACTGA
back to top