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Homology
BLAST of mRNA_Ecto-sp13_S_contig5661.16024.1 vs. uniprot
Match: D7FXT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT9_ECTSI) HSP 1 Score: 583 bits (1502), Expect = 2.910e-194 Identity = 305/344 (88.66%), Postives = 311/344 (90.41%), Query Frame = 3
Query: 3 YQPNYFRPLRKGPIEAHTTFTLELLAQDLNLLTEGSDVFPAAEEWSSKRDVAATAFGGAPPTRDGANNSTGATXXTTALSDNGLVGRGEETRKLATSPGAAQAEEHGEPKARNRDGVVPPLTESEAWERVAREILRKCYWGSDIQDGVVGDPTIVATRPDCDQTTSGPDQPSLEECITSQVTRTPPSGLMTETAVGQPGPALARVDTADVRLVVGTCVFRRVIKVMGLGIPPMYLLVVVSQWHDALIVRCYDFIGGEIRQAERLDPWRDSALISEFKNMEPREREIQIQVILDDLVVFDSTGAGADAWSVKFREDGAAAIIVDDAGKDLYDAQVEEQMAAAAAQ 1034
Y PN FRPLR+GP+EAHTTFTLELL QDLNLLTEGSD+ AAEEWSSKRDV TAFGGA PTRDGA STGAT TTALSDNGLVGRGEETR LA S GAAQAEEHGE KARNRD VVPPLTESEAWERVAREILRKCYWGS+IQ GV DPT VATRPD DQTTSG DQPSLEECITSQVTRTPPSGLM ETAVGQPG L VDTADVRL VGTCVFRRVIKVMGLGIPPMYLLVVVSQWHDAL+VRCYDFIGGEIRQAERLD RDSALISEFKNMEPREREIQ+QVILDDLVVFDST AG DAWSVKFREDGAAAIIVDDAGKDLYDAQVEEQMAAAAAQ
Sbjct: 719 YAPNDFRPLRQGPVEAHTTFTLELLHQDLNLLTEGSDILAAAEEWSSKRDVTTTAFGGAHPTRDGAKKSTGATTATTALSDNGLVGRGEETRVLAPSSGAAQAEEHGEIKARNRDDVVPPLTESEAWERVAREILRKCYWGSNIQGGVARDPTTVATRPDYDQTTSGSDQPSLEECITSQVTRTPPSGLMAETAVGQPGRPLTGVDTADVRLAVGTCVFRRVIKVMGLGIPPMYLLVVVSQWHDALVVRCYDFIGGEIRQAERLDRSRDSALISEFKNMEPREREIQLQVILDDLVVFDSTDAGTDAWSVKFREDGAAAIIVDDAGKDLYDAQVEEQMAAAAAQ 1062
BLAST of mRNA_Ecto-sp13_S_contig5661.16024.1 vs. uniprot
Match: A0A6H5L4P3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4P3_9PHAE) HSP 1 Score: 494 bits (1271), Expect = 5.480e-161 Identity = 252/277 (90.97%), Postives = 257/277 (92.78%), Query Frame = 3
Query: 3 YQPNYFRPLRKGPIEAHTTFTLELLAQDLNLLTEGSDVFPAAEEWSSKRDVAATAFGGAPPTRDGANNSTGATXXTTALSDNGLVGRGEETRKLATSPGAAQAEEHGEPKARNRDGVVPPLTESEAWERVAREILRKCYWGSDIQDGVVGDPTIVATRPDCDQTTSGPDQPSLEECITSQVTRTPPSGLMTETAVGQPGPALARVDTADVRLVVGTCVFRRVIKVMGLGIPPMYLLVVVSQWHDALIVRCYDFIGGEIRQAERLDPWRDSALISEFK 833
YQPN FRPLR+GPIE HT FTL+LLAQDLNLLTEGSDVFPAAEEWSSKRDVA T FGGAPPTRDGANNSTGAT TTALSDNGLVGRGEETRKLA SPGAAQAEEHGEPKARNRDG VPPLTESEAWERVAREILRKCYWGSD+Q GV GDPTIVATRPD DQTTSG DQPSLEECITSQ TRTPPSGLMTETA+GQPG LA V TADVRLVVGTCVFRRVIKVMGLGIPPMYLLVVVSQWHDAL+VRCYDFIGGEIRQAERLD RDSALISEFK
Sbjct: 700 YQPNDFRPLRQGPIETHTAFTLKLLAQDLNLLTEGSDVFPAAEEWSSKRDVATTTFGGAPPTRDGANNSTGATTATTALSDNGLVGRGEETRKLALSPGAAQAEEHGEPKARNRDGAVPPLTESEAWERVAREILRKCYWGSDVQGGVAGDPTIVATRPDYDQTTSGQDQPSLEECITSQATRTPPSGLMTETAMGQPGRPLAGVHTADVRLVVGTCVFRRVIKVMGLGIPPMYLLVVVSQWHDALVVRCYDFIGGEIRQAERLDRSRDSALISEFK 976
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 277.7 |
| Seed ortholog evalue | 5e-72 |
| Seed eggNOG ortholog | 2880.D7FXT9 |
| Model size | 1714 |
| Hectar predicted targeting category | other localisation |
| Exons | 8 |
| EggNOG OGs | 2CJ4Y@1,2SDBE@2759 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-20_003360.1 |
| Cds size | 711 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681463784.5408614-UTR-Ecto-sp13_S_contig5661:297..698 | 1681463784.5408614-UTR-Ecto-sp13_S_contig5661:297..698 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig5661 298..698 + |
| 1681463784.5555344-UTR-Ecto-sp13_S_contig5661:1083..1224 | 1681463784.5555344-UTR-Ecto-sp13_S_contig5661:1083..1224 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig5661 1084..1224 + |
| 1681463784.5695615-UTR-Ecto-sp13_S_contig5661:1738..1765 | 1681463784.5695615-UTR-Ecto-sp13_S_contig5661:1738..1765 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig5661 1739..1765 + |
| 1681463784.643708-UTR-Ecto-sp13_S_contig5661:5048..5482 | 1681463784.643708-UTR-Ecto-sp13_S_contig5661:5048..5482 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig5661 5049..5482 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681463784.5882432-CDS-Ecto-sp13_S_contig5661:1765..1870 | 1681463784.5882432-CDS-Ecto-sp13_S_contig5661:1765..1870 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig5661 1766..1870 + |
| 1681463784.598248-CDS-Ecto-sp13_S_contig5661:2372..2531 | 1681463784.598248-CDS-Ecto-sp13_S_contig5661:2372..2531 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig5661 2373..2531 + |
| 1681463784.607893-CDS-Ecto-sp13_S_contig5661:3459..3547 | 1681463784.607893-CDS-Ecto-sp13_S_contig5661:3459..3547 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig5661 3460..3547 + |
| 1681463784.6173868-CDS-Ecto-sp13_S_contig5661:3971..4084 | 1681463784.6173868-CDS-Ecto-sp13_S_contig5661:3971..4084 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig5661 3972..4084 + |
| 1681463784.6259532-CDS-Ecto-sp13_S_contig5661:4491..4621 | 1681463784.6259532-CDS-Ecto-sp13_S_contig5661:4491..4621 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig5661 4492..4621 + |
| 1681463784.6345098-CDS-Ecto-sp13_S_contig5661:4932..5048 | 1681463784.6345098-CDS-Ecto-sp13_S_contig5661:4932..5048 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig5661 4933..5048 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5661.16024.1 >prot_Ecto-sp13_S_contig5661.16024.1 ID=prot_Ecto-sp13_S_contig5661.16024.1|Name=mRNA_Ecto-sp13_S_contig5661.16024.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=237bp
MTETAVGQPGPALARVDTADVRLVVGTCVFRRVIKVMGLGIPPMYLLVVV SQWHDALIVRCYDFIGGEIRQAERLDPWRDSALISEFKNMEPREREIQIQ VILDDLVVFDSTGAGADAWSVKFREDGAAAIIVDDAGKDLYDAQVEEQMA AAAAQVEKRREDTQKSQRAAREKDRRARARKDKRDAKRREAQAKSRKTGA TSKRGKKLHVGGKRGKSAEDDSDNTSDEDSNRSFDG* back to topmRNA from alignment at Ecto-sp13_S_contig5661:298..5482+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig5661.16024.1 ID=mRNA_Ecto-sp13_S_contig5661.16024.1|Name=mRNA_Ecto-sp13_S_contig5661.16024.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5185bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5661:298..5482+ (Ectocarpus species13 EcNAP12_S_4_19m) GGTATCAGCCGAACTACTTTCGCCCCCTGAGGAAAGGGCCAATCGAAGCT
CACACGACCTTCACCCTGGAGCTTCTCGCCCAAGATTTGAATCTTCTTAC
CGAAGGCTCGGACGTCTTTCCCGCTGCGGAGGAGTGGTCCTCCAAGCGGG
ACGTTGCCGCGACCGCATTCGGCGGCGCGCCTCCCACGCGCGATGGCGCA
AACAATTCTACCGGTGCCACGACGACAACAACAGCACTGTCCGACAACGG
TTTGGTAGGAAGGGGAGAGGAGACCAGAAAATTGGCTACATCACCGGGGG
CCGCACAGGCTGAGGAACACGGGGAACCAAAAGCAAGAAATAGGGATGGC
GTTGTGCCGCCCCTGACGGAAAGCGAGGCCTGGGAGAGGGTCGCACGCGA
GGTGTGTTCTTCTTCATTGGGCTTATCCTACAGGTGCCACCGGTACCACC
CCACCAAAAAATTGATTCGATTATTGACAGCAGCAGCAGCAGCAGCGCCG
GCAGTAACACCGGCGGGAGCGCATGCGTCATGTGCGTACCTTAGTCTTTA
GTCCTAGGGGCACTAAGCTACGAGCACTGAGAGATTGATTGTGGAACGTG
TGTTTGAGGGGTCGCCAGCAGGAGGTCAACAACACCCCTATCGTGGGCGA
TGTAACGCTCTACCAAGATCGACGTATGTCGATTTCTCACAACGTACATG
TTTGCCGAACGAAGGCCTACACACCACTTCATCAAGCATTCTTCCGTACA
GATGGTCCATTTCGCTTTCGCCAAATACTGCCTCAGATTTTGCGCAAGTG
CTACTGGGGTAGCGATATCCAAGATGGCGTTGTCGGGGACCCGACCATCG
TCGCCACACGCCCGGACTGCGACCAGACAACTTCGGGGCCGGATCAGCCT
TCCCTCGAAGAGTGCATCACGTCTCAGGTATCTTTTTGCCGCCGTCGTTG
GTGAATACACAAGCCTCAAACGCAAGGTGTCGAATTAGGACTACTGTGCT
TTGCCCCGAATCAACACACCTGTAGTATTCAAACTCGAGCATGCACGACC
TATCTTCCCCGAGCTGTGTAGACGGTACAGTCCCTTGCTTGCGTTTCCAC
TCCTCGCGCGACAAAGGGCCGCGCGAGGTCACCTACCGCAAGCCTCCGAA
TTGATGGTTACCTCTCCGCCCGATGCCTCGTGATCGGCTGGTTAAAAGTA
CGGCCACGTTCACCGAGTGCTGTTCCCTTCAGTTGGCCGCGCGCAAACTC
CCGTTAAGGCCCAGCCGAGAACCAGTCCCATAGCAGTGCGGTACCGTATT
CCTTTTCGCCCTCGTTCTCGTCATCCTTCGCGAGTAGCGCCCGGTACATC
CCCCCCTTACGTGGCTTGCTCGGCCCTTCGAAAAAGTGAGTACATCTCGA
GCCCGAGGTTTGTGTGCGGCCTCCCTCCTTGGCTTGATCAGGTGACAAGA
ACGCCTCCGAGCGGGCTCATGACGGAAACGGCGGTGGGGCAGCCCGGCCC
AGCATTGGCCAGAGTGGACACAGCCGATGTCCGACTCGTAGTTGGAACGT
GTGTTTTCCGCAGGGTAATAAAGGTGAGACATTTTTCCCCGACCCTGTTT
TTCGAGCTCTCCGGAATGAGTTTGCCCCCGCTTTTCCTGATGTTCTGTGT
ATCGGCTTATGTATGTACGGTCCGTCAAGGCTAAGTGCAGCCCGGGATGT
TAATTTGCGCGCGTCCTGGTGATGCGTTGGCTTGGTCAGGCGGGGGATTC
CCGTCAAACCCGAACGAGCAAATCTGGCACTCCGACGCTCAGTTCATTTG
AAAGGCCCCCCTCGGCCGAGAATCACGCACACACCTGATTAAACAACCCT
TCGAAGAATACCGCAAAACACACACCTAAACTATCAATGCTTGGTGTCAG
GTGTTCCATTTTATCATCGCACAACGCCTTCTCAGCTCAACCCTCTTCAC
CCGTTACGATTGGTCTTCGTACACAGGTTCACAGTGTGCTACCGCTACTA
GCAAAGGCTGATTGCAACAATAGGTTTTCCCTCCCATCCCATCTTCCTTG
TCTGCCAAAATCCATGCCGTTGCAGGTTATGGGTTTGGGGATCCCTCCCA
TGTACCTCTTGGTGGTCGTTTCCCAGTGGCATGATGCCCTCATTGTGAGA
TGCTACGACTTCATCGGCGGCGAAATCAGACAGGCAGAGAGGCTCGACCC
TTGGAGGGACTCGGCCCTCATCTCGGAGTTCAAGGTGTGTGTTTTTCGTC
GTTTTCCGGACCATGTATCGTGAATAGCTCTTTCGTGTGACGGCAGGTGA
TCTCCGGACGGATGGGTAACCTATTATGTGGCCTTTTTTCTCTGACGTAC
GAAGATACATGTTAGAAACAGACTCATCGCGGCGCACTATGCTCTGAACG
GGTTGTGCACCCCGCATGCGTCAGTTTTCCTCGAGCCCGGTTGGAACGTG
ACGGTGTTCAAACTTGGATGACACTCCGATACGTTGCCTGTCGGTAACCC
CGTCCCCTTGTTGCCACACGGGTAGATTGGCAAGAGCGCCGGCTTGAATC
ACGCTCCGGCACACTTGAAACAAATCGTACGTTGGTCGGTGGGTGGAGAA
TTCAGATCTGCTTTTGTTCATGGTTCACAGGAATCACAGCCGGGCACCGG
GTGGACATACTGCCATTGCTGTCGCACCAGAAGGGTTGTTTTTTCCAGGT
CGATGCTCTTCGTTGAAAGATGTGGCCTTGACTCAACATTGGCGCCGTAA
GGGAGAGAGGTGACTCGAGTAGAGGGGACTCTTCGCACCAGCACAACCGA
AAATTGTAATGTACCCGCTGGCGGGATTGCGGCCGAAGCCTTGCCGAATT
GAGCCTCTTGTTCACAAATCCAGTGGTGCCTCTCTTGGTATGGCGAACGG
TATCGGCCTTGATTTGCCGAATGCGCATCTCTTTGCGGCAAAGGTCGTTT
GGACCTGATACGCCAAGAAGAATTCATCCTCCTATTGCGAAGGTTGCTGG
GGTTGAAATACCGAACTGGGATAATTTTCTCCTGGGACCACGTAGTTCCG
ATTGGGTGTTTGAACGATGGACTGCTAGTTTCTCAGCTGTAGCAGCGGCA
ACAACAACAGCGTGCACTCCGGCTAACCATCCGCCGTCAACCACTCGTGT
TATCGGCATTAGAATATGGAACCGCGAGAACGGGAGATACAGATTCAGGT
CATCCTTGACGACTTGGTGGTATTCGACAGCACAGGCGCTGGAGCAGACG
GTGAGATGTTCTTCGGCGTTTTTGCTACTAGTTTACAGGCTCGCTCTCCC
CGCGTCGTACGATACATCTGTACGATAACCTTTAGCTGTCGTTCGTACTA
AGGGTTTTGATTGGGACTCACTCTCCGATCAAAGCCAACCCATGGTTGAT
CCGTTGTTCACTTACTCTGTCATTGCTTCTGCTGATGCGGTCCCCAAGTT
ATTGTTATTGCATGTTTTTCTACTATTTCTCGGTCTGGTCCGATCACCCG
CGTTGCACCCCGATTGCCCGCAATGGTCCGCACGTATTTGAGGCGCCTGC
CCAGTTAGATTTTTCGGCGGGGTCCCGCAGTCGCAGCACCCGCGCGACGC
TTTTCCCGTTCAAAATAGGGAGAACAAAATATTCCCTCTCTCGTCGCCTT
CCCAACTTTCATAACAAAATATAGCGTGGTCGGTGAAATTTCGAGAAGAC
GGAGCGGCTGCCATAATCGTCGACGATGCTGGGAAGGATCTGTACGACGC
GCAAGTTGAGGAGCAAATGGCCGCCGCAGCTGCCCAGGCGAGCCTGTTTC
GAGTCAACATAACTGCCCAGAAAATGTTTTTCGCACACAGCAGAAATTGT
TTCGGCCTTGCGGTGTGCAGGGTGGGTGCGCGATGCACCAAAAAAATGTT
CTTGGACGCTTTCCTTCTCGAGAGTCGCCCCGGGTATATCACGTCGAGTC
TACACATTGCCAAGACTTGCTCGTGCGAATGAATGCAATTCGTGTTAATT
TCGTGCTCCATCAAAATATTGGGACATCCTAGAAGCACGAAGGGTCACAG
CTCGCTACTCAGTCAAAACTGCCTAGCCGAGGTACCGGATCCTCGTGCGG
GGCGACCATGTCGATTGTGGACCACGTTTCGTAAGGGTTGCGGGAAAAAC
GTAGAAAAACGAAAAATCCTCGGTGCGACACTGCCGCCTTGCAGGTCGAG
AAACGACGCGAGGACACCCAAAAGAGTCAGCGCGCCGCTCGTGAGAAGGA
CAGGCGTGCTCGCGCGAGGAAGGACAAGCGCGACGCGAAACGCAGGGAGG
CGCAAGCTAAGAGCAGAAAGACCGGTAAGGCCGCAACGACAGGGTACATG
AGCCGTAGATGTCTCTCCCATGGCTGTTGTTCCGACATATGCGCCTGCAT
ATACGAGGACGTTTGCCTGTATCGACCCCCATGTATCGAGTGTGTGATGT
GGGAAGGCCATGGCCAGTACTCACCCGCGTGAAGCATGTCATCAACGCCA
CTTGTAATCAACGCTGTTTGTAGGCCGCGCACTTATGTTCCGGTGGTATA
GATTCAGATATGGGGCATGGAATTGTATGCTCATCCAAACCAATTTACCA
CACGTTCGCACCCTTGCCTGCAACACTCGCAAAAGGGGCCACTTCCAAGC
GAGGGAAGAAACTACACGTGGGTGGCAAAAGGGGGAAAAGCGCCGAAGAT
GACAGTGATAACACTAGCGATGAGGACAGCAACCGGAGCTTCGACGGCTG
AGGTAAAGCATAGGAGAAGGAAAAGTCGTCTAACCATCTGTGACCGACGA
CAGCACACGCGAGGGAGGACGAACTGTGGGGGCGACTTCCGGCAAGCGAA
CCAAGCGCTGGCTACTGGGGGCATCGATTGCTTCGGGCGTTGGTGGAAAA
ATCCGTGGCTCTGGAAAAAAGCGTTGTACCACCGTCTAGACTGGCTCCTC
GAGGGGGGACCTGCGTCGCATTAGCGCCTGCACTGAGGCTTTGACGACAA
CACATCGTTGTTGGCCTTGTCGCGGAGGTTAGCTTTACTGTGATATGGGC
AAGACATGCGTCTGTAGCGAGATTCTTGCCACAGGCTGCGAACGGTGAAG
CGTGGGGGCCGACCCAGGAAGGGAACGTGACTTGTTGGTTTTGTGGGCCC
CTTTCGCTACCTGAAGTCAACTCGGCGATCTGCAT back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig5661:298..5482+ >mRNA_Ecto-sp13_S_contig5661.16024.1 ID=mRNA_Ecto-sp13_S_contig5661.16024.1|Name=mRNA_Ecto-sp13_S_contig5661.16024.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=711bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5661:298..5482+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGACGGAAACGGCGGTGGGGCAGCCCGGCCCAGCATTGGCCAGAGTGGA CACAGCCGATGTCCGACTCGTAGTTGGAACGTGTGTTTTCCGCAGGGTAA TAAAGGTTATGGGTTTGGGGATCCCTCCCATGTACCTCTTGGTGGTCGTT TCCCAGTGGCATGATGCCCTCATTGTGAGATGCTACGACTTCATCGGCGG CGAAATCAGACAGGCAGAGAGGCTCGACCCTTGGAGGGACTCGGCCCTCA TCTCGGAGTTCAAGAATATGGAACCGCGAGAACGGGAGATACAGATTCAG GTCATCCTTGACGACTTGGTGGTATTCGACAGCACAGGCGCTGGAGCAGA CGCGTGGTCGGTGAAATTTCGAGAAGACGGAGCGGCTGCCATAATCGTCG ACGATGCTGGGAAGGATCTGTACGACGCGCAAGTTGAGGAGCAAATGGCC GCCGCAGCTGCCCAGGTCGAGAAACGACGCGAGGACACCCAAAAGAGTCA GCGCGCCGCTCGTGAGAAGGACAGGCGTGCTCGCGCGAGGAAGGACAAGC GCGACGCGAAACGCAGGGAGGCGCAAGCTAAGAGCAGAAAGACCGGGGCC ACTTCCAAGCGAGGGAAGAAACTACACGTGGGTGGCAAAAGGGGGAAAAG CGCCGAAGATGACAGTGATAACACTAGCGATGAGGACAGCAACCGGAGCT TCGACGGCTGA back to top
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