mRNA_Ecto-sp13_S_contig56601.16022.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig56601.16022.1 vs. uniprot
Match: D7FIR5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIR5_ECTSI) HSP 1 Score: 82.8 bits (203), Expect = 1.730e-17 Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 1
Query: 1 MASGEGPDAWLGLLKWTLSHQDGTEPSDARPMGDEVRA 114
MASGEGPDAWLGLLKWTLSHQDGTEPSDARPMGDE RA
Sbjct: 1 MASGEGPDAWLGLLKWTLSHQDGTEPSDARPMGDEDRA 38
BLAST of mRNA_Ecto-sp13_S_contig56601.16022.1 vs. uniprot
Match: A0A835YIP1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIP1_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 7.420e-8 Identity = 24/38 (63.16%), Postives = 27/38 (71.05%), Query Frame = 1
Query: 1 MASGEGPDAWLGLLKWTLSHQDGTEPSDARPMGDEVRA 114
MA G WLGLLKW+L HQDGT PS+ARP+ E RA
Sbjct: 1 MAGGADNGIWLGLLKWSLKHQDGTAPSEARPLSSEDRA 38
BLAST of mRNA_Ecto-sp13_S_contig56601.16022.1 vs. uniprot
Match: A0A1E7FBX5_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBX5_9STRA) HSP 1 Score: 52.4 bits (124), Expect = 9.070e-7 Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 1
Query: 4 ASGEG---PDAWLGLLKWTLSHQDGTEPSD-ARPMGDEVRA 114
A G+G P AWLGLLKWTL+H DGT+PSD A+ M DE RA
Sbjct: 3 AGGKGGGDPWAWLGLLKWTLAHSDGTKPSDPAKMMSDEDRA 43
BLAST of mRNA_Ecto-sp13_S_contig56601.16022.1 vs. uniprot
Match: A0A7S1ZDQ8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZDQ8_9STRA) HSP 1 Score: 51.6 bits (122), Expect = 1.700e-6 Identity = 23/35 (65.71%), Postives = 26/35 (74.29%), Query Frame = 1
Query: 10 GEGPDAWLGLLKWTLSHQDGTEPS-DARPMGDEVR 111
G P AWLGLLKW+L+HQDGT PS D PM +E R
Sbjct: 8 GNSPFAWLGLLKWSLAHQDGTRPSSDVAPMSEEDR 42
BLAST of mRNA_Ecto-sp13_S_contig56601.16022.1 vs. uniprot
Match: A0A7S2IJG9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IJG9_9STRA) HSP 1 Score: 51.2 bits (121), Expect = 2.330e-6 Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 1
Query: 10 GEGPDAWLGLLKWTLSHQDGTEPS-DARPMGDE 105
G P AW+GLLKW+L+HQDGT PS +++PM DE
Sbjct: 12 GNSPFAWMGLLKWSLAHQDGTRPSSESKPMSDE 44
BLAST of mRNA_Ecto-sp13_S_contig56601.16022.1 vs. uniprot
Match: A0A662X5A3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X5A3_9STRA) HSP 1 Score: 49.3 bits (116), Expect = 3.960e-6 Identity = 17/31 (54.84%), Postives = 24/31 (77.42%), Query Frame = 1
Query: 19 PDAWLGLLKWTLSHQDGTEPSDARPMGDEVR 111
P+ WLGL+KWT+ H DGT P++A P+ +E R
Sbjct: 59 PNKWLGLMKWTMQHSDGTTPTEATPISEEKR 89
BLAST of mRNA_Ecto-sp13_S_contig56601.16022.1 vs. uniprot
Match: A0A662X9H0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X9H0_9STRA) HSP 1 Score: 49.3 bits (116), Expect = 1.110e-5 Identity = 17/31 (54.84%), Postives = 24/31 (77.42%), Query Frame = 1
Query: 19 PDAWLGLLKWTLSHQDGTEPSDARPMGDEVR 111
P+ WLGL+KWT+ H DGT P++A P+ +E R
Sbjct: 4 PNKWLGLMKWTMQHSDGTTPTEATPISEEKR 34
BLAST of mRNA_Ecto-sp13_S_contig56601.16022.1 vs. uniprot
Match: A0A8K1CTK5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTK5_PYTOL) HSP 1 Score: 48.1 bits (113), Expect = 2.840e-5 Identity = 17/31 (54.84%), Postives = 24/31 (77.42%), Query Frame = 1
Query: 19 PDAWLGLLKWTLSHQDGTEPSDARPMGDEVR 111
P WLGL++W++ +QDGT P+DA+PM E R
Sbjct: 4 PSKWLGLMRWSMKYQDGTVPTDAKPMSKEDR 34 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56601.16022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig56601.16022.1 >prot_Ecto-sp13_S_contig56601.16022.1 ID=prot_Ecto-sp13_S_contig56601.16022.1|Name=mRNA_Ecto-sp13_S_contig56601.16022.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp MASGEGPDAWLGLLKWTLSHQDGTEPSDARPMGDEVRAback to top mRNA from alignment at Ecto-sp13_S_contig56601:728..841- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig56601.16022.1 ID=mRNA_Ecto-sp13_S_contig56601.16022.1|Name=mRNA_Ecto-sp13_S_contig56601.16022.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56601:728..841- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56601:728..841- >mRNA_Ecto-sp13_S_contig56601.16022.1 ID=mRNA_Ecto-sp13_S_contig56601.16022.1|Name=mRNA_Ecto-sp13_S_contig56601.16022.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56601:728..841- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |