mRNA_Ecto-sp13_S_contig5660.16021.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5660.16021.1 vs. uniprot
Match: A0A6H5LNR6_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNR6_9PHAE) HSP 1 Score: 180 bits (456), Expect = 3.090e-52 Identity = 118/130 (90.77%), Postives = 121/130 (93.08%), Query Frame = 1
Query: 4 VTLPSQAAAXXXXXXXXXXXLSVGAAGRERDGSXXXXXXXXGERGDGGLLAKKVARQIAERKKQDEVPFQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQASFASTEGVKDLLDVVKSSLEDDVAARP 393
VTLPSQ XXXXXXXXXXX SVGAAGRERDGS XXX GERGDGGLLAKKVARQIAERKKQDEVPFQTKAMR+IERLQKSTVYRTTVIKVQFPDRVVLQ++FASTEGVKDLLDVVKSSLEDDVAARP
Sbjct: 209 VTLPSQX--XXXXXXXXXXXFSVGAAGRERDGSSGMGXXXDGERGDGGLLAKKVARQIAERKKQDEVPFQTKAMRDIERLQKSTVYRTTVIKVQFPDRVVLQSTFASTEGVKDLLDVVKSSLEDDVAARP 336
BLAST of mRNA_Ecto-sp13_S_contig5660.16021.1 vs. uniprot
Match: D7FME0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME0_ECTSI) HSP 1 Score: 162 bits (410), Expect = 3.180e-49 Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 1
Query: 127 GERGDGGLLAKKVARQIAERKKQDEVPFQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQASFASTEGVKDLLDVVKSSLEDDVAARP 393
GERGDGGLLAKKVARQIAERKKQDEVPFQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQA+FASTEGVKDLLDVVKSSLEDDVAARP
Sbjct: 7 GERGDGGLLAKKVARQIAERKKQDEVPFQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQATFASTEGVKDLLDVVKSSLEDDVAARP 95
BLAST of mRNA_Ecto-sp13_S_contig5660.16021.1 vs. uniprot
Match: A0A7S2V2I9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2I9_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 3.930e-14 Identity = 40/85 (47.06%), Postives = 62/85 (72.94%), Query Frame = 1
Query: 139 DGGLLAKKVARQIAERKKQDEVPFQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQASFASTEGVKDLLDVVKSSLEDDVAARP 393
D L+A+ + +++ E+KK++ PF+T+AMRE+E L+K+ V+ TVI+VQFPDRVV+QA F E V ++D+V+ +L D A RP
Sbjct: 238 DSTLIARSMHKKMEEQKKREAAPFRTRAMRELEALEKAKVFAFTVIRVQFPDRVVIQAHFHPRESVGTVIDLVRQNLSPDHANRP 322
BLAST of mRNA_Ecto-sp13_S_contig5660.16021.1 vs. uniprot
Match: A0A835YJ49_9STRA (UBX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ49_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 8.720e-14 Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 1
Query: 148 LLAKKVARQIAERKKQDEVPFQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQASFASTEGVKDLLDVVKSSLEDDVA 384
LLA++VARQ+AERK+++ PFQT+AMRE+ERLQK+ Y +I+VQ PDR V+QA F E V D+ V ++L V+
Sbjct: 552 LLAQRVARQLAERKREEATPFQTRAMRELERLQKAKAYSHALIRVQLPDRSVVQAKFLPRETVGDVAAAVSAALRAGVS 630
BLAST of mRNA_Ecto-sp13_S_contig5660.16021.1 vs. uniprot
Match: A0A7S2RJ30_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJ30_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 1.400e-12 Identity = 37/78 (47.44%), Postives = 57/78 (73.08%), Query Frame = 1
Query: 136 GDGGLLAKKVARQIAERKKQDEVPFQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQASFASTEGVKDLLDVVKSSL 369
GD GL+AK +A ++A+ K+ ++VPFQTKAMRE+ +L+K+ VY T+++VQFPDR V+ A+F E ++ + VV L
Sbjct: 113 GDAGLVAKAMAAKMAQAKRAEDVPFQTKAMRELAQLEKARVYERTIVRVQFPDRTVVTANFHPHETIQAVAAVVSDLL 190
BLAST of mRNA_Ecto-sp13_S_contig5660.16021.1 vs. uniprot
Match: A0A7S2RKB7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKB7_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 2.610e-12 Identity = 37/78 (47.44%), Postives = 57/78 (73.08%), Query Frame = 1
Query: 136 GDGGLLAKKVARQIAERKKQDEVPFQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQASFASTEGVKDLLDVVKSSL 369
GD GL+AK +A ++A+ K+ ++VPFQTKAMRE+ +L+K+ VY T+++VQFPDR V+ A+F E ++ + VV L
Sbjct: 509 GDAGLVAKAMAAKMAQAKRAEDVPFQTKAMRELAQLEKARVYERTIVRVQFPDRTVVTANFHPHETIQAVAAVVSDLL 586
BLAST of mRNA_Ecto-sp13_S_contig5660.16021.1 vs. uniprot
Match: A0A7S3XNW3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNW3_HETAK) HSP 1 Score: 68.9 bits (167), Expect = 4.490e-12 Identity = 39/82 (47.56%), Postives = 59/82 (71.95%), Query Frame = 1
Query: 139 DGGLLAKKVARQIAERKKQDEVPFQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQASFASTEGVKDLLDVVKSSLEDDVA 384
D LL ++VA+Q+AE KKQ+ F+T+AMRE++RL+K+ + T+++VQFPDRVVLQA F E V + D+V + L ++ A
Sbjct: 19 DARLLQQRVAQQVAEAKKQE--VFRTRAMRELDRLEKARAFTHTLVRVQFPDRVVLQARFHPRETVGAVADLVAAHLREEYA 98
BLAST of mRNA_Ecto-sp13_S_contig5660.16021.1 vs. uniprot
Match: K3WKD5_GLOUD (UBX domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKD5_GLOUD) HSP 1 Score: 64.7 bits (156), Expect = 1.700e-9 Identity = 31/55 (56.36%), Postives = 46/55 (83.64%), Query Frame = 1
Query: 208 FQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQASFASTEGVKDLLDVVKSSLE 372
F+T+AMRE++ L+K V++TT+I+VQFPDRVVLQA+F E V+D++D V+ SL+
Sbjct: 449 FRTQAMRELDELKKKKVFQTTLIRVQFPDRVVLQAAFHPNETVQDVVDHVRESLQ 503
BLAST of mRNA_Ecto-sp13_S_contig5660.16021.1 vs. uniprot
Match: A0A3M6VAR4_9STRA (UBX domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VAR4_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 2.040e-8 Identity = 36/87 (41.38%), Postives = 57/87 (65.52%), Query Frame = 1
Query: 130 ERGDGGLLAKKV-ARQIAERKKQDEVPFQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQASFASTEGVKDLLDVVKSSLEDDVAA 387
ER D +L + ARQ+ K ++ F+T+AMRE++ L++ V++T +I+VQFPDR V+QASF E ++D++D V L+D A
Sbjct: 416 ERSDAQILISSLKARQVEMEKTKN---FRTRAMRELDELKRKRVFQTVLIRVQFPDRAVMQASFHPNETIQDVMDHVTKCLDDQYKA 499
BLAST of mRNA_Ecto-sp13_S_contig5660.16021.1 vs. uniprot
Match: A0A485KPD5_9STRA (Aste57867_10017 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KPD5_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 9.570e-8 Identity = 31/72 (43.06%), Postives = 50/72 (69.44%), Query Frame = 1
Query: 184 RKKQDEVP----FQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQASFASTEGVKDLLDVVKSSLEDDVAA 387
R +QDE F+T AMRE++ +QK V+++TV++++FPD+VVLQA+F E + ++ ++ SL DDV A
Sbjct: 437 RARQDEAEKNQSFRTSAMRELDEMQKKAVFQSTVLRIRFPDQVVLQATFHPNETIAAVVKLLHESLNDDVPA 508 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5660.16021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5660.16021.1 >prot_Ecto-sp13_S_contig5660.16021.1 ID=prot_Ecto-sp13_S_contig5660.16021.1|Name=mRNA_Ecto-sp13_S_contig5660.16021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp QVTLPSQAAAAAAAATAAAGGLSVGAAGRERDGSSGMGGGGDGERGDGGLback to top mRNA from alignment at Ecto-sp13_S_contig5660:7847..8663+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5660.16021.1 ID=mRNA_Ecto-sp13_S_contig5660.16021.1|Name=mRNA_Ecto-sp13_S_contig5660.16021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=817bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5660:7847..8663+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5660:7847..8663+ >mRNA_Ecto-sp13_S_contig5660.16021.1 ID=mRNA_Ecto-sp13_S_contig5660.16021.1|Name=mRNA_Ecto-sp13_S_contig5660.16021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5660:7847..8663+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |