mRNA_Ecto-sp13_S_contig5660.16021.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5660.16021.1
Unique NamemRNA_Ecto-sp13_S_contig5660.16021.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5660.16021.1 vs. uniprot
Match: A0A6H5LNR6_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNR6_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 3.090e-52
Identity = 118/130 (90.77%), Postives = 121/130 (93.08%), Query Frame = 1
Query:    4 VTLPSQAAAXXXXXXXXXXXLSVGAAGRERDGSXXXXXXXXGERGDGGLLAKKVARQIAERKKQDEVPFQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQASFASTEGVKDLLDVVKSSLEDDVAARP 393
            VTLPSQ   XXXXXXXXXXX SVGAAGRERDGS    XXX GERGDGGLLAKKVARQIAERKKQDEVPFQTKAMR+IERLQKSTVYRTTVIKVQFPDRVVLQ++FASTEGVKDLLDVVKSSLEDDVAARP
Sbjct:  209 VTLPSQX--XXXXXXXXXXXFSVGAAGRERDGSSGMGXXXDGERGDGGLLAKKVARQIAERKKQDEVPFQTKAMRDIERLQKSTVYRTTVIKVQFPDRVVLQSTFASTEGVKDLLDVVKSSLEDDVAARP 336          
BLAST of mRNA_Ecto-sp13_S_contig5660.16021.1 vs. uniprot
Match: D7FME0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME0_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 3.180e-49
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 1
Query:  127 GERGDGGLLAKKVARQIAERKKQDEVPFQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQASFASTEGVKDLLDVVKSSLEDDVAARP 393
            GERGDGGLLAKKVARQIAERKKQDEVPFQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQA+FASTEGVKDLLDVVKSSLEDDVAARP
Sbjct:    7 GERGDGGLLAKKVARQIAERKKQDEVPFQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQATFASTEGVKDLLDVVKSSLEDDVAARP 95          
BLAST of mRNA_Ecto-sp13_S_contig5660.16021.1 vs. uniprot
Match: A0A7S2V2I9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2I9_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.930e-14
Identity = 40/85 (47.06%), Postives = 62/85 (72.94%), Query Frame = 1
Query:  139 DGGLLAKKVARQIAERKKQDEVPFQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQASFASTEGVKDLLDVVKSSLEDDVAARP 393
            D  L+A+ + +++ E+KK++  PF+T+AMRE+E L+K+ V+  TVI+VQFPDRVV+QA F   E V  ++D+V+ +L  D A RP
Sbjct:  238 DSTLIARSMHKKMEEQKKREAAPFRTRAMRELEALEKAKVFAFTVIRVQFPDRVVIQAHFHPRESVGTVIDLVRQNLSPDHANRP 322          
BLAST of mRNA_Ecto-sp13_S_contig5660.16021.1 vs. uniprot
Match: A0A835YJ49_9STRA (UBX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ49_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 8.720e-14
Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 1
Query:  148 LLAKKVARQIAERKKQDEVPFQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQASFASTEGVKDLLDVVKSSLEDDVA 384
            LLA++VARQ+AERK+++  PFQT+AMRE+ERLQK+  Y   +I+VQ PDR V+QA F   E V D+   V ++L   V+
Sbjct:  552 LLAQRVARQLAERKREEATPFQTRAMRELERLQKAKAYSHALIRVQLPDRSVVQAKFLPRETVGDVAAAVSAALRAGVS 630          
BLAST of mRNA_Ecto-sp13_S_contig5660.16021.1 vs. uniprot
Match: A0A7S2RJ30_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJ30_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.400e-12
Identity = 37/78 (47.44%), Postives = 57/78 (73.08%), Query Frame = 1
Query:  136 GDGGLLAKKVARQIAERKKQDEVPFQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQASFASTEGVKDLLDVVKSSL 369
            GD GL+AK +A ++A+ K+ ++VPFQTKAMRE+ +L+K+ VY  T+++VQFPDR V+ A+F   E ++ +  VV   L
Sbjct:  113 GDAGLVAKAMAAKMAQAKRAEDVPFQTKAMRELAQLEKARVYERTIVRVQFPDRTVVTANFHPHETIQAVAAVVSDLL 190          
BLAST of mRNA_Ecto-sp13_S_contig5660.16021.1 vs. uniprot
Match: A0A7S2RKB7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKB7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.610e-12
Identity = 37/78 (47.44%), Postives = 57/78 (73.08%), Query Frame = 1
Query:  136 GDGGLLAKKVARQIAERKKQDEVPFQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQASFASTEGVKDLLDVVKSSL 369
            GD GL+AK +A ++A+ K+ ++VPFQTKAMRE+ +L+K+ VY  T+++VQFPDR V+ A+F   E ++ +  VV   L
Sbjct:  509 GDAGLVAKAMAAKMAQAKRAEDVPFQTKAMRELAQLEKARVYERTIVRVQFPDRTVVTANFHPHETIQAVAAVVSDLL 586          
BLAST of mRNA_Ecto-sp13_S_contig5660.16021.1 vs. uniprot
Match: A0A7S3XNW3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNW3_HETAK)

HSP 1 Score: 68.9 bits (167), Expect = 4.490e-12
Identity = 39/82 (47.56%), Postives = 59/82 (71.95%), Query Frame = 1
Query:  139 DGGLLAKKVARQIAERKKQDEVPFQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQASFASTEGVKDLLDVVKSSLEDDVA 384
            D  LL ++VA+Q+AE KKQ+   F+T+AMRE++RL+K+  +  T+++VQFPDRVVLQA F   E V  + D+V + L ++ A
Sbjct:   19 DARLLQQRVAQQVAEAKKQE--VFRTRAMRELDRLEKARAFTHTLVRVQFPDRVVLQARFHPRETVGAVADLVAAHLREEYA 98          
BLAST of mRNA_Ecto-sp13_S_contig5660.16021.1 vs. uniprot
Match: K3WKD5_GLOUD (UBX domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKD5_GLOUD)

HSP 1 Score: 64.7 bits (156), Expect = 1.700e-9
Identity = 31/55 (56.36%), Postives = 46/55 (83.64%), Query Frame = 1
Query:  208 FQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQASFASTEGVKDLLDVVKSSLE 372
            F+T+AMRE++ L+K  V++TT+I+VQFPDRVVLQA+F   E V+D++D V+ SL+
Sbjct:  449 FRTQAMRELDELKKKKVFQTTLIRVQFPDRVVLQAAFHPNETVQDVVDHVRESLQ 503          
BLAST of mRNA_Ecto-sp13_S_contig5660.16021.1 vs. uniprot
Match: A0A3M6VAR4_9STRA (UBX domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VAR4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.040e-8
Identity = 36/87 (41.38%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  130 ERGDGGLLAKKV-ARQIAERKKQDEVPFQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQASFASTEGVKDLLDVVKSSLEDDVAA 387
            ER D  +L   + ARQ+   K ++   F+T+AMRE++ L++  V++T +I+VQFPDR V+QASF   E ++D++D V   L+D   A
Sbjct:  416 ERSDAQILISSLKARQVEMEKTKN---FRTRAMRELDELKRKRVFQTVLIRVQFPDRAVMQASFHPNETIQDVMDHVTKCLDDQYKA 499          
BLAST of mRNA_Ecto-sp13_S_contig5660.16021.1 vs. uniprot
Match: A0A485KPD5_9STRA (Aste57867_10017 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KPD5_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 9.570e-8
Identity = 31/72 (43.06%), Postives = 50/72 (69.44%), Query Frame = 1
Query:  184 RKKQDEVP----FQTKAMREIERLQKSTVYRTTVIKVQFPDRVVLQASFASTEGVKDLLDVVKSSLEDDVAA 387
            R +QDE      F+T AMRE++ +QK  V+++TV++++FPD+VVLQA+F   E +  ++ ++  SL DDV A
Sbjct:  437 RARQDEAEKNQSFRTSAMRELDEMQKKAVFQSTVLRIRFPDQVVLQATFHPNETIAAVVKLLHESLNDDVPA 508          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5660.16021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LNR6_9PHAE3.090e-5290.77UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FME0_ECTSI3.180e-4998.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V2I9_9STRA3.930e-1447.06Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YJ49_9STRA8.720e-1451.90UBX domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2RJ30_9STRA1.400e-1247.44Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2RKB7_9STRA2.610e-1247.44Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3XNW3_HETAK4.490e-1247.56Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K3WKD5_GLOUD1.700e-956.36UBX domain-containing protein n=1 Tax=Globisporang... [more]
A0A3M6VAR4_9STRA2.040e-841.38UBX domain-containing protein n=1 Tax=Peronospora ... [more]
A0A485KPD5_9STRA9.570e-843.06Aste57867_10017 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5660contigEcto-sp13_S_contig5660:7847..8663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score64.7
Seed ortholog evalue3.8e-08
Seed eggNOG ortholog65071.PYU1_T005427
Preferred nameASPSCR1
Model size407
KEGG koko:K15627
KEGG Pathwayko05202,map05202
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009653,GO:0009893,GO:0009898,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010604,GO:0010827,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0019898,GO:0019899,GO:0019941,GO:0022411,GO:0030154,GO:0030163,GO:0030433,GO:0030435,GO:0030659,GO:0031090,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032879,GO:0032984,GO:0033036,GO:0033500,GO:0033554,GO:0034613,GO:0034762,GO:0034976,GO:0035265,GO:0036503,GO:0040007,GO:0042221,GO:0042592,GO:0042593,GO:0042886,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043632,GO:0043933,GO:0043934,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0046324,GO:0046907,GO:0048471,GO:0048518,GO:0048522,GO:0048589,GO:0048646,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051117,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0097708,GO:0098552,GO:0098562,GO:1901564,GO:1901565,GO:1901575,GO:1901698
Exons2
EggNOG free text desc.TUG ubiquitin-like domain
EggNOG OGs1MEUG@121069,KOG2699@1,KOG2699@2759
Ec32 ortholog descriptionUbiquitin-related domain
Ec32 orthologEc-19_003630.1
Cds size405
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463784.4099846-CDS-Ecto-sp13_S_contig5660:7846..81251681463784.4099846-CDS-Ecto-sp13_S_contig5660:7846..8125Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5660 7847..8125 +
1681463784.4256022-CDS-Ecto-sp13_S_contig5660:8537..86631681463784.4256022-CDS-Ecto-sp13_S_contig5660:8537..8663Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5660 8538..8663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5660.16021.1prot_Ecto-sp13_S_contig5660.16021.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5660 7847..8663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5660.16021.1

>prot_Ecto-sp13_S_contig5660.16021.1 ID=prot_Ecto-sp13_S_contig5660.16021.1|Name=mRNA_Ecto-sp13_S_contig5660.16021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
QVTLPSQAAAAAAAATAAAGGLSVGAAGRERDGSSGMGGGGDGERGDGGL
LAKKVARQIAERKKQDEVPFQTKAMREIERLQKSTVYRTTVIKVQFPDRV
VLQASFASTEGVKDLLDVVKSSLEDDVAARPVSE*
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mRNA from alignment at Ecto-sp13_S_contig5660:7847..8663+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5660.16021.1 ID=mRNA_Ecto-sp13_S_contig5660.16021.1|Name=mRNA_Ecto-sp13_S_contig5660.16021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=817bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5660:7847..8663+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTAACCTTGCCTAGCCAGGCGGCAGCGGCAGCGGCGGCGGCAACGGC GGCGGCGGGAGGCCTCTCCGTTGGCGCAGCAGGAAGAGAAAGAGACGGTA GTTCAGGGATGGGAGGGGGTGGTGACGGGGAGAGGGGAGACGGGGGTCTC CTGGCGAAGAAGGTGGCGCGGCAGATCGCTGAGAGGAAGAAGCAGGACGA GGTCCCTTTCCAGACCAAGGCCATGCGGGAGATCGAGCGGCTGCAGAAGT CGACCGTGTACCGGACCACCGTCATCAAGGTAATGTAGGGATTGTGAGAA AAAGGGGTTCGATATTTTCCATTTGTTTTCGACAATGATTTCGTCTTAAG AGGGCACAAGTACATAGCGGTGTCTCTCGCCATGTCCATCTCGATCGATT GCGCGGTCTTCCCGTCTGTCTGTCCGTCTGTCTGCCTGTCTCTCCCTCCT CCGTGTCGTCCTCTGGACGCTGAAAACAATCCAAGTAGTACCCGGCTTAC TTTGGGCTTGTTCTCGGCTACCGCAGGTCCGCTTCCCCTCTGGCCGCTGC AGATATTCAAAGTCTGACCCTCCATGCACACCTGTTTCTTTTCGTAGACC GCAGGTGGAGTTCCCTCTGGCCGCTGCAAACAATCGAAGTCTGACGCCCC CCCGCCCCCCGCACATTTCTTTTTCTTGTGGTATTCCACAGGTTCAGTTC CCCGATCGGGTGGTCCTGCAGGCGTCGTTTGCGTCGACCGAAGGCGTGAA GGACCTTCTGGACGTCGTCAAGAGCAGCCTGGAGGATGACGTAGCGGCAA GGCCGGTGAGCGAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5660:7847..8663+

>mRNA_Ecto-sp13_S_contig5660.16021.1 ID=mRNA_Ecto-sp13_S_contig5660.16021.1|Name=mRNA_Ecto-sp13_S_contig5660.16021.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5660:7847..8663+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTAACCTTGCCTAGCCAGGCGGCAGCGGCAGCGGCGGCGGCAACGGC
GGCGGCGGGAGGCCTCTCCGTTGGCGCAGCAGGAAGAGAAAGAGACGGTA
GTTCAGGGATGGGAGGGGGTGGTGACGGGGAGAGGGGAGACGGGGGTCTC
CTGGCGAAGAAGGTGGCGCGGCAGATCGCTGAGAGGAAGAAGCAGGACGA
GGTCCCTTTCCAGACCAAGGCCATGCGGGAGATCGAGCGGCTGCAGAAGT
CGACCGTGTACCGGACCACCGTCATCAAGGTTCAGTTCCCCGATCGGGTG
GTCCTGCAGGCGTCGTTTGCGTCGACCGAAGGCGTGAAGGACCTTCTGGA
CGTCGTCAAGAGCAGCCTGGAGGATGACGTAGCGGCAAGGCCGGTGAGCG
AGTAA
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