mRNA_Ecto-sp13_S_contig5660.16020.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5660.16020.1 vs. uniprot
Match: D7FT67_ECTSI (PUB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT67_ECTSI) HSP 1 Score: 293 bits (751), Expect = 1.200e-96 Identity = 174/212 (82.08%), Postives = 179/212 (84.43%), Query Frame = 1
Query: 43 MEVDQPSVPAMGIDVCQAALEAVAAGHFDADSEACVMTLAKVIDNVVHRPGDSRTRQIRCGNAAFQHKVGRITGGISFLEGVGFVSREEGPQXXXXXXXXXXXXX---SAGDRFLVLAPEREDAGLLRAARDLLSKQAEALGVPRERMPQPPLARPSPXXXXXXXXXAAA-FDPYK-----------GPQESSLTEKRLQELLAKRAAVVSG 633
MEVDQPSVPAMG+DVC+AALEA+AAGHFDADSEACV TLAKVIDNVVHRPGDSRTRQIRCGNAAFQHKVGRITGGISFLEGVGFVSRE+GPQXXXXXXXXX SAGDRFLVL PEREDAGLL+AARDLLSKQAEALGVPRERMPQPP R SP AAA FDPYK GPQESSLTEKRLQELLAKRAAVVSG
Sbjct: 1 MEVDQPSVPAMGVDVCRAALEAMAAGHFDADSEACVTTLAKVIDNVVHRPGDSRTRQIRCGNAAFQHKVGRITGGISFLEGVGFVSREDGPQXXXXXXXXXSGGDGRGSAGDRFLVLPPEREDAGLLKAARDLLSKQAEALGVPRERMPQPPRVRTSPPPRSAGQASAAAAFDPYKPFMTSTAPTPKGPQESSLTEKRLQELLAKRAAVVSG 212
BLAST of mRNA_Ecto-sp13_S_contig5660.16020.1 vs. uniprot
Match: A0A6H5LNR6_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNR6_9PHAE) HSP 1 Score: 292 bits (747), Expect = 1.490e-94 Identity = 175/210 (83.33%), Postives = 182/210 (86.67%), Query Frame = 1
Query: 43 MEVDQPSVPAMGIDVCQAALEAVAAGHFDADSEACVMTLAKVIDNVVHRPGDSRTRQIRCGNAAFQHKVGRITGGISFLEGVGFVSREEGPQXXXXXXXXXXXXX---SAGDRFLVLAPEREDAGLLRAARDLLSKQAEALGVPRERMPQPPLARPSPXXXXXXXXXAAAFDPYK-----------GPQESSLTEKRLQELLAKRAAVVS 630
MEVDQPSVPAMGI+VC+AALEA+AAGHFDADS+ACV TLAKVIDNVVHRPGDSRTRQIRC NAAFQHKVGRITGGISFLEGVGFVSREEGPQXXXXXXXXXXXXX SAGDRFLVLAPEREDAGLL+AARDLLSKQAEALGVPRERMPQPP ARPSP AAFDPYK PQESSLTEKRL+ELLAKRAAVV+
Sbjct: 1 MEVDQPSVPAMGIEVCRAALEAMAAGHFDADSQACVTTLAKVIDNVVHRPGDSRTRQIRCANAAFQHKVGRITGGISFLEGVGFVSREEGPQXXXXXXXXXXXXXXXXSAGDRFLVLAPEREDAGLLKAARDLLSKQAEALGVPRERMPQPPRARPSPPPPSAGQAAPAAFDPYKPFMTSTAPTPKDPQESSLTEKRLEELLAKRAAVVT 210
BLAST of mRNA_Ecto-sp13_S_contig5660.16020.1 vs. uniprot
Match: B7GA66_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GA66_PHATC) HSP 1 Score: 87.4 bits (215), Expect = 1.520e-16 Identity = 68/204 (33.33%), Postives = 98/204 (48.04%), Query Frame = 1
Query: 79 IDVCQAALEAVAAGHFDADSEACVMTLAKVIDNVVHRPGDSRTRQIRCGNAAFQHKVGRITGGISFLEGVGF-VSREEGPQXXXXXXXXXXXXXSAGDRFLVLAPEREDAG-LLRAARDLLSKQAEALGVPRERMPQ---PPLARPSPXXXXXXXXXAAAFDPYKG---------------PQES--SLTEKRLQELLAKRAAV 624
I V + A+ + FDAD++AC++TL K++D ++ +PGD + RQIR NAAF KVG GG+ +L+ GF + + P A +R LVLAP ED ++ A R LL++ + LG+ + +P PP S AFDPY G P S S TE LQ L ++AA+
Sbjct: 16 IKVLEEAVTVIFQNSFDADTKACLVTLMKMLDAIIQKPGDPKVRQIRLSNAAFHRKVGSRKGGLEYLQACGFQLQTSDTP---------LLSRHDATERVLVLAPAHEDTSRIITARRLLLTRAVQDLGMQQAELPPYRPPPKLVSSTPTNPNQYAETDAFDPYVGRRYDAQSAAVGTNLGPDASYVSHTETELQRLRGQQAAL 210
BLAST of mRNA_Ecto-sp13_S_contig5660.16020.1 vs. uniprot
Match: A0A1Z5KM45_FISSO (UBX domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KM45_FISSO) HSP 1 Score: 80.9 bits (198), Expect = 2.990e-14 Identity = 64/191 (33.51%), Postives = 88/191 (46.07%), Query Frame = 1
Query: 97 ALEAVAAGHFDADSEACVMTLAKVIDNVVHRPGDSRTRQIRCGNAAFQHKVGRITGGISFLEGVGFVSREEGPQXXXXXXXXXXXXXSAGDRFLVLAPEREDAGLLRAARDLLSKQAEALGVPRERMPQPPLARPSPXXXXXXXXXAAAFDPYKG-----------------PQESSLTEKRLQELLAKRA 618
A+ + A +FDA+S+ C++TL K+IDN++ +P D + R IR NAAF KVG GGI FL GF R P +GD LVL + + LL A R L + + LG+ E +P+ P AA F+PY G P S T+ LQ+LL K+A
Sbjct: 17 AIGLIFANNFDAESKVCLITLMKIIDNILQKPSDPKVRTIRLQNAAFASKVGSRKGGIEFLLACGF-ERSIAPAPLLNT--------GSGDEQLVLKDDHQSR-LLAARRILTMRAVQELGMKAEELPE--YREPPVVNLTGGAPSAAEFNPYVGHRFDAQSLAVGVDLGPDPNYISKTDSELQKLLEKQA 195
BLAST of mRNA_Ecto-sp13_S_contig5660.16020.1 vs. uniprot
Match: A0A7S2EGG3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EGG3_TRICV) HSP 1 Score: 76.6 bits (187), Expect = 2.990e-14 Identity = 44/97 (45.36%), Postives = 62/97 (63.92%), Query Frame = 1
Query: 34 ADAMEVD----QPSVPAMGIDVCQA---ALEAVAAGHFDADSEACVMTLAKVIDNVVHRPGDSRTRQIRCGNAAFQHKVGRITGGISFLEGVGFVSR 303
A+ MEV+ PS P + C+ AL+ + + +FDADS+ACV+TL K++DNV+ +PG+ + R IR GNAAF KVG GG+ FL GF +R
Sbjct: 26 AEPMEVECARPDPSSPETLVTRCRTPSEALDVLLSSNFDADSKACVLTLLKLLDNVLSKPGNDKVRAIRLGNAAFDAKVGSKRGGLDFLLTCGFEAR 122
BLAST of mRNA_Ecto-sp13_S_contig5660.16020.1 vs. uniprot
Match: A0A7S3P9R7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P9R7_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 2.100e-13 Identity = 44/124 (35.48%), Postives = 65/124 (52.42%), Query Frame = 1
Query: 31 QADAMEVDQPSVPAM-GIDVCQAALEAVAAGHFDADSEACVMTLAKVIDNVVHRPGDSRTRQIRCGNAAFQHKVGRITGGISFLEGVGFVSREEGPQXXXXXXXXXXXXXSAGDRFLVLAPERE 399
QA + E + PS+ + I + A+ + G FD DS+AC++TL KV+DNV+H+P D + R IR GN +F+ KV GG+ FL GF + + G+ LVL P+ E
Sbjct: 30 QASSTETNDPSMELIPSIKAMEEAVLQIFQGSFDEDSKACLVTLMKVLDNVLHKPADDKVRSIRLGNPSFRKKVASRPGGVEFLLACGFTRQTQA-----------LLGGDKGEETLVLLPQNE 142
BLAST of mRNA_Ecto-sp13_S_contig5660.16020.1 vs. uniprot
Match: A0A7S2PYL7_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PYL7_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 3.030e-11 Identity = 30/59 (50.85%), Postives = 44/59 (74.58%), Query Frame = 1
Query: 121 HFDADSEACVMTLAKVIDNVVHRPGDSRTRQIRCGNAAFQHKVGRITGGISFLEGVGFV 297
+FDA ++ C+ TL K+IDN++ RP + + R +RC NA F+ KVGR+TGG+ FL +GFV
Sbjct: 222 NFDAATKDCLNTLLKIIDNLLSRPNEPKVRSLRCANATFEKKVGRVTGGLEFLYSIGFV 280
BLAST of mRNA_Ecto-sp13_S_contig5660.16020.1 vs. uniprot
Match: A0A1V9Z967_9STRA (UBX domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z967_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 7.260e-11 Identity = 67/204 (32.84%), Postives = 92/204 (45.10%), Query Frame = 1
Query: 46 EVDQPSVPAMGIDVCQAALEAVAAGHFDADSEACVMTLAKVIDNVVHRPGDSRTRQIRCGNAAFQHKVGRITGGISFLEGVGFVSREEGPQXXXXXXXXXXXXXSAGDRFLVLAPEREDAGLLRAARDLLSKQAEALGVPRERMPQP--PLARPSPXXXXXXXXXAAAFDPYKG--------PQESSLTEKRLQELLAKRAAVV 627
EV P P D AL+ V +FDA S V+TL K++ N++ +PGD + R IR N F VGR TGGI FL VGF ++G L LA E + L+ A +L +A+ L + R PQ P A PSP FD Y+ P+ +S+TE RL +L K+ A++
Sbjct: 204 EVPTPVAPTTPYD----ALQRVRNSNFDAVSADVVLTLMKILCNILSKPGDPKVRSIRMTNPKFTASVGRHTGGIDFLLAVGFALDDDG-------------------EMLRLATESPEE--LQQALRVLQDEADDLRIEHNRRPQVVVPSAFPSPE-----------FDAYQPLITRMQAQPRGASITEMRLDDLKKKQEALL 371
BLAST of mRNA_Ecto-sp13_S_contig5660.16020.1 vs. uniprot
Match: A0A7R9W4P4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W4P4_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.180e-10 Identity = 48/137 (35.04%), Postives = 66/137 (48.18%), Query Frame = 1
Query: 97 ALEAVAAGHFDADSEACVMTLAKVIDNVVHRPGDSRTRQIRCGNAAFQHKVGRITGGISFLEGVGFVSREEGPQXXXXXXXXXXXXXSAGD-------RFLVLAPEREDAGLLRAARDLL-SKQAEALGVPRERMPQ 483
A++ + + +FDADS V+TL KV+DNV+ +PGDSR R IR GN A KV G + FL VGF ++ + G F+ L E ED + AR LL SK LG+ +P+
Sbjct: 81 AIDLLLSSNFDADSRETVVTLLKVLDNVLSKPGDSRVRTIRLGNPAIYKKVTSRKGALDFLVAVGFTAKPKEVPLLSGSVGGVGGGIGIGAAEKKEEVEFIELTEENEDTAQILDARKLLASKAVHVLGMKASDLPK 217
BLAST of mRNA_Ecto-sp13_S_contig5660.16020.1 vs. uniprot
Match: A0A6G0WWR8_9STRA (UBX domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWR8_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 1.830e-10 Identity = 52/186 (27.96%), Postives = 86/186 (46.24%), Query Frame = 1
Query: 97 ALEAVAAGHFDADSEACVMTLAKVIDNVVHRPGDSRTRQIRCGNAAFQHKVGRITGGISFLEGVGFVSREEGPQXXXXXXXXXXXXXSAGDRFLVLAPEREDAGLLRAARDLLSKQAEALGVPRERMPQPPLARPSPXXXXXXXXXAAAFDPYKG--------PQESSLTEKRLQELLAKRAAVVS 630
A++ V FDA S+ V+TL K++ N++ PGD++ R IR GN F VG+ GG++FL +GF A FLVL E++ +L+ + D+L +A+ LG+ + + P + FD +K P+ +S+TE RL+ L K +++
Sbjct: 233 AIQHVRNNCFDAVSKTVVLTLMKIVCNLLSNPGDTKVRSIRVGNVKFNENVGKHLGGLAFLNSIGF-------------------EFDANKEFLVLT--NENSSVLQQSLDILHSEADDLGIDKSQRP---------VVIVPTNSTSVDFDAFKPIITRVQAQPRGASITEIRLENLKKKEEVLLA 388 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5660.16020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5660.16020.1 >prot_Ecto-sp13_S_contig5660.16020.1 ID=prot_Ecto-sp13_S_contig5660.16020.1|Name=mRNA_Ecto-sp13_S_contig5660.16020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=211bp GGGSAQGEAGQADAMEVDQPSVPAMGIDVCQAALEAVAAGHFDADSEACVback to top mRNA from alignment at Ecto-sp13_S_contig5660:3705..7139+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5660.16020.1 ID=mRNA_Ecto-sp13_S_contig5660.16020.1|Name=mRNA_Ecto-sp13_S_contig5660.16020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5660:3705..7139+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5660:3705..7139+ >mRNA_Ecto-sp13_S_contig5660.16020.1 ID=mRNA_Ecto-sp13_S_contig5660.16020.1|Name=mRNA_Ecto-sp13_S_contig5660.16020.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5660:3705..7139+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |