mRNA_Ecto-sp13_S_contig566.16019.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig566.16019.1
Unique NamemRNA_Ecto-sp13_S_contig566.16019.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig566.16019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig566contigEcto-sp13_S_contig566:19556..22905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size438
Hectar predicted targeting categoryother localisation
Exons2
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463784.1236815-UTR-Ecto-sp13_S_contig566:19555..196661681463784.1236815-UTR-Ecto-sp13_S_contig566:19555..19666Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig566 19556..19666 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463784.1403422-CDS-Ecto-sp13_S_contig566:19666..198171681463784.1403422-CDS-Ecto-sp13_S_contig566:19666..19817Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig566 19667..19817 -
1681463784.1527178-CDS-Ecto-sp13_S_contig566:22729..229051681463784.1527178-CDS-Ecto-sp13_S_contig566:22729..22905Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig566 22730..22905 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig566.16019.1prot_Ecto-sp13_S_contig566.16019.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig566 19667..22905 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig566.16019.1

>prot_Ecto-sp13_S_contig566.16019.1 ID=prot_Ecto-sp13_S_contig566.16019.1|Name=mRNA_Ecto-sp13_S_contig566.16019.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
MCAECPLHRRTTRRSARLTRKSDLEALFERTRLCRDVSHETKLLKACSPL
AEWHCYHTRYRCLCPECCCWNVMARGFCQSLCRCCCPPSSLLRPNHQLAR
VLSPPARR*
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mRNA from alignment at Ecto-sp13_S_contig566:19556..22905-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig566.16019.1 ID=mRNA_Ecto-sp13_S_contig566.16019.1|Name=mRNA_Ecto-sp13_S_contig566.16019.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3350bp|location=Sequence derived from alignment at Ecto-sp13_S_contig566:19556..22905- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTGCAGAGTGTCCACTGCACCGTCGTACCACAAGGCGCTCAGCACG
GCTGACAAGAAAGTCAGACCTGGAGGCGCTGTTCGAACGCACCAGACTCT
GCCGCGACGTTTCGCACGAGACCAAACTGTTGAAGGCATGCAGCCCGTTA
GCAGAATGGCACTGTTATCATACCAGGTATCGGTGTCTATGCCTCGAAAA
GCTATGGTTGAAACGTCATGGCTCGAGGATTCTGCCAAAGCTTGTGGCGA
TGTTGCTGTTCCTTTTCCTCGTTGCCTTGTCCGAATCACCAGCTGGTCGG
GGCACTCTCCCCTCCCGCCCGGTGGCAGACCCTGAAAGCCGCGAAGACGT
TGACTTTCTCATGCAACTTGTCTCCTACCAACAGATAAGAAAACTTCGAG
GACCTCGTTATAGAGCTCCCCTATCACCCACATCCGTGCTCCTCTCTGAC
AACTGATTCTTCCACAGTCAAGTCGTCAGATGAAGAGGAATGTGGAACAA
CCAGTTGACCGAGAGGAGCACGGATGTAAAGGGTAGGCGATCTCTGTACG
GAAGTCCTCAAGCGTTCACTCATCTGTTGGTAGGTTGCAAACTGGACCAG
ATTAGTCCATGCCCTCCCTCCTCTCAGAGCCTATCGCCAGGAGGGAGGAG
AGTACCCCGACCAGCTGGTGATTCGGACCAGGAACAGGGGAACAGAAACA
TCGCCATAAGCTTTGGCGAAACCACCGAGCCATGGCGTTGCTTCGCGCTA
ATGCGGAGGGAGCTACCTTCGTAACCATCTCCATCTCCTCGCTCCGCTGG
TCACTGCGTCCATCGCCGCTTGATGCGGAGAGGCTCACCCTGCCCTTTTC
TGAGATGTTTTCAGAAGTACTGGTCACAGTAGTATAGATTAAGGACGACG
ACACCACCAATTAGCCTCGGGGACAAGCTGAACCAAGCAGTGGTGCCCTG
CTACACACTAGCGTAGTGTTGCTCTGCTACACATTGGCGCACTTTCCCTC
CGTGTAGCAGGGCGTGCACTGCTCACAAGAGCTTGTCCCGGAGGCTAGGG
GTATCGTTGTCCATGTAGGGCGACAGATCGCTTGAGTTTTGGGCAACAGG
ATGGGTAATCATGTCGCCGTTGTTGTCCATTCACAACCCACCGAGCACGT
TGTGGTGTGGGTTTCGCGCTAGGCTGGGAAACAAACGAAATGGAACGACA
GTCGTCTCGTGTGGGCTTTGTTGTCCCCGTGGCGCTTCCGTGCAATGTCG
TGCATCAAGCGTCCTCACCGAGAAGGCCTCTGCAAGTATGATCTTCCGCG
ATCAGACAAGGCCCGGTAATAGAACATTGTGGTAAGTCCATGTCCTCCTT
GAGGCTACACATTGCACGGGCTGTACACTTCCATGCGACATGACTCTGAC
GACTTTTGTTCGGTTTCGTGCTTGTTCCCCAGGCTGAAGCTAATCCCAGA
ACAACAACGCGCTCGGTGCCCCGGCCGTGGATGACAACATCGACTTCATG
CCAATCTTGCCAATGGCTGGTTGCGACATCGGCTGGTAACGAGACATCGA
CAACTCTAGCCTGGGGGGCAAACTGAGACAAACAGTGATGCCCTGCCACG
CACTGGTGCGGCAGGGCATGCGCTGCTTGCCTGAGGGTGTCCGCGTGACC
ATGGATGTCGAAGTTCATGTATGATTCCGAGTCGCATCAGGCTTTCGACA
GCAGGATGGGCATCAAATCGATGTTGCCATCCGTGGACAACGCGCCGAGC
ACGTCGTTTTGGGACTAGCGCCTACCCGGGGAACAAGCACCAAACGGGAA
CGATAATCGTCTCGTGCGAGCATTGATGTCCAGCGCGGCGCGATCGTATT
AGGTCGTGCGTCGATCATGGCCTCCTCACCGAGAACACCTCTACAACGGC
ATACGCGGTTGCCCCTAGGCGCTTTCCCTACGGCTGTGTATTCTGAGCTT
GCACGGACCCCATCTGCACCCCTCCCACCTGTTGGGAGAAAGGGTTTGAG
CACCTCCATTCCCTCTTCAGGCAGCCCATCAGCAGCACGAAAGCCACCGA
CACCACGTCCTGTCCTAGTGCACCCAACACCGGATCCGCCGACATGGTTT
CGAAGGCTATCGCCCCCGCCGAGCCCATTCCCCCCCAACATCACTCTTCA
ATCGAAAGTGGTGCCAGGGGAGAATGAGTACGGCGGGAGTCATGGCCTTC
GAAACCATATCTACTGATCCGGTGTTGGGTGCGACGAGGTATGATGCCCT
ATCGATGGTTGTCGTGCTGATGAGGACCTGCCTCAAGAGGCAGCGGAGGT
GCTTGTGCCTCCACACTCAACAGGAATAAGAGAGTGCAAAAAGGGTCCGT
GTGGAGCATCATGAGACCAAAACCGTACGGAAAGCGTTGGGTGGTAACTG
CACAATGCTGTCTCGCAGTCATACATCGGGCATGTTAGGGTATGTGGTTG
ATGGTTTTCCACTTGTGATTTCGTTCAGATGGTCTCCTCTCAGAAGCTAG
CCTTGTGGCCGAACGAGGTCCGCTGGTGGCCCGCTTTCCATATTGTTGTC
AACAAGAAGGCTTGGCGTATTTCCGACTCGATGGTTGTGTACGGAATGGA
TGGGTCGGTGCCACCAAACTTTGTCTAAATTTCGCAGCATCAACAGCGGG
TGGACAACGCGTGGTCGGTCCGCTGCGTGTGGCTCGTCCGGCCAACAGCA
CCACAGGCACACAGTTGAGACAATCTACCGCAACGCAGTAGTAGCTCTGC
CGTTCGTTGTTCACCGCTGGGGTAAAAGAATCAAAGATGCGATCGTTGAA
CAATAGCTACTTCTTCTGCCAGTTCCTGTTTCGTTTCCCTGTCCGTCAGT
GTTTGTCCGTTAGTGCCTGAAAGTGAACACTTAGATAGCCGGTCGCAGAG
ACGAAAATAATGTGTGACGTGTGCGAAGTGTCCACTTCACCGTACTGCAG
GCGCTCGGAGCGGCTGGCGAGAAAGTCAGACCTGGAGGCGCTGTTCGAAC
GCACCAGACTCTGCCACGACGTTTCGCACGAGACCAAACTGTTGAAGGCA
TGCAGCCCGTTAGCAGAATGGCACTGTTATCATACCAGGTATCGGTGTCT
GTGCCCCGAATGCTGTTGTTGGAACGTCATGGCTCGAGGATTCTGCCAAA
GCTTGTGCCGATGTTGCTGTCCCCCTTCCTCTTTGCTTCGTCCGAATCAC
CAGCTGGCCAGGGTACTCTCCCCTCCCGCCCGGCGGTAGACCCTGAAGGC
CGCGAAGGCGTTGACTTTCTCATCGATTTTGCCTCCTACCAATAGTTGAG
TGACATCAAAGGACCTCGTTATAGAGCTCCCCTATCCCACACATACGTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig566:19556..22905-

>mRNA_Ecto-sp13_S_contig566.16019.1 ID=mRNA_Ecto-sp13_S_contig566.16019.1|Name=mRNA_Ecto-sp13_S_contig566.16019.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig566:19556..22905- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTGCAGAGTGTCCACTGCACCGTCGTACCACAAGGCGCTCAGCACG
GCTGACAAGAAAGTCAGACCTGGAGGCGCTGTTCGAACGCACCAGACTCT
GCCGCGACGTTTCGCACGAGACCAAACTGTTGAAGGCATGCAGCCCGTTA
GCAGAATGGCACTGTTATCATACCAGGTATCGGTGTCTGTGCCCCGAATG
CTGTTGTTGGAACGTCATGGCTCGAGGATTCTGCCAAAGCTTGTGCCGAT
GTTGCTGTCCCCCTTCCTCTTTGCTTCGTCCGAATCACCAGCTGGCCAGG
GTACTCTCCCCTCCCGCCCGGCGGTAG
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