mRNA_Ecto-sp13_S_contig5656.16009.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5656.16009.1
Unique NamemRNA_Ecto-sp13_S_contig5656.16009.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5656.16009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5656contigEcto-sp13_S_contig5656:690..1264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size575
Hectar predicted targeting categorysignal peptide
Exons1
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463783.4535048-UTR-Ecto-sp13_S_contig5656:689..8531681463783.4535048-UTR-Ecto-sp13_S_contig5656:689..853Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5656 690..853 +
1681463783.477469-UTR-Ecto-sp13_S_contig5656:1234..12641681463783.477469-UTR-Ecto-sp13_S_contig5656:1234..1264Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5656 1235..1264 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463783.467459-CDS-Ecto-sp13_S_contig5656:853..12341681463783.467459-CDS-Ecto-sp13_S_contig5656:853..1234Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5656 854..1234 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5656.16009.1prot_Ecto-sp13_S_contig5656.16009.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5656 854..1234 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5656.16009.1

>prot_Ecto-sp13_S_contig5656.16009.1 ID=prot_Ecto-sp13_S_contig5656.16009.1|Name=mRNA_Ecto-sp13_S_contig5656.16009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
MYAKGSSGYPVPALIAVFALSGLATQSTVLAQFIPVCMCQVWNAEEIRVN
KGWLVEEREREREVNLTRRWCARAANPLTCVQRVEVRQVFVGVGGVTFTR
TTRRAENKYSFEHEAYVRGSTRWNEI*
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mRNA from alignment at Ecto-sp13_S_contig5656:690..1264+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5656.16009.1 ID=mRNA_Ecto-sp13_S_contig5656.16009.1|Name=mRNA_Ecto-sp13_S_contig5656.16009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=575bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5656:690..1264+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGATGATTGGCGCAGAAGAACTCTAGCGGTCAAGTCTTTTTCGCTC
GGTGATCGACGGCTTTCAAGATGAGAGTATTGTTTTGCAGCCTGCGGGGG
AAGCTGGATATCCATCGGAGTAGGGGGGGGGTCAGACGGACGATGATGAT
GGACATATATATATATGTATGCAAAGGGTAGCAGTGGGTACCCTGTCCCA
GCCTTAATCGCTGTATTCGCTCTCAGTGGGTTGGCGACACAATCGACGGT
TTTGGCACAATTTATTCCGGTGTGTATGTGCCAAGTTTGGAATGCGGAGG
AAATAAGAGTAAACAAGGGTTGGTTGGTGGAGGAGAGAGAGAGAGAGAGA
GAAGTTAACCTTACTCGGAGGTGGTGTGCACGAGCAGCCAATCCTCTGAC
TTGCGTGCAGCGTGTGGAAGTGCGGCAAGTGTTTGTGGGGGTAGGGGGGG
TGACTTTCACACGAACGACTCGTCGAGCAGAAAATAAATACTCCTTCGAG
CACGAAGCATATGTACGGGGTAGTACGCGGTGGAATGAAATCTAGTGCAG
AGAGGGCGGGGGTGGTTGATGACGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5656:690..1264+

>mRNA_Ecto-sp13_S_contig5656.16009.1 ID=mRNA_Ecto-sp13_S_contig5656.16009.1|Name=mRNA_Ecto-sp13_S_contig5656.16009.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5656:690..1264+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATGCAAAGGGTAGCAGTGGGTACCCTGTCCCAGCCTTAATCGCTGT
ATTCGCTCTCAGTGGGTTGGCGACACAATCGACGGTTTTGGCACAATTTA
TTCCGGTGTGTATGTGCCAAGTTTGGAATGCGGAGGAAATAAGAGTAAAC
AAGGGTTGGTTGGTGGAGGAGAGAGAGAGAGAGAGAGAAGTTAACCTTAC
TCGGAGGTGGTGTGCACGAGCAGCCAATCCTCTGACTTGCGTGCAGCGTG
TGGAAGTGCGGCAAGTGTTTGTGGGGGTAGGGGGGGTGACTTTCACACGA
ACGACTCGTCGAGCAGAAAATAAATACTCCTTCGAGCACGAAGCATATGT
ACGGGGTAGTACGCGGTGGAATGAAATCTAG
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