mRNA_Ecto-sp13_S_contig56552.16008.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56552.16008.1
Unique NamemRNA_Ecto-sp13_S_contig56552.16008.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig56552.16008.1 vs. uniprot
Match: A0A6H5LCY9_9PHAE (Pept_C1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LCY9_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 5.160e-35
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 1
Query:   13 AGSFMGGHAVKMIGWGTDEASGEDYWLIANSWNPSWGEGGLFRILRGVNECGIEGQIVAGEV 198
            +GSFMGGHAVKMIGWGTDE SGEDYWLIANSWNPSWGEGGLFRILRGVNECGIEGQIVAGEV
Sbjct:  501 SGSFMGGHAVKMIGWGTDEVSGEDYWLIANSWNPSWGEGGLFRILRGVNECGIEGQIVAGEV 562          
BLAST of mRNA_Ecto-sp13_S_contig56552.16008.1 vs. uniprot
Match: A0A835ZA77_9STRA (Cathepsin B-like proteinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA77_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.310e-24
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 1
Query:   19 SFMGGHAVKMIGWGTDEASGEDYWLIANSWNPSWGEGGLFRILRGVNECGIEGQIVAGE 195
            SFMGGHAVK+IGWGTD+ +G DYW + NSWN SWGE G FRILRG N CGIEG+IVAGE
Sbjct:  470 SFMGGHAVKIIGWGTDKETGVDYWTVLNSWNESWGEQGTFRILRGSNHCGIEGEIVAGE 528          
BLAST of mRNA_Ecto-sp13_S_contig56552.16008.1 vs. uniprot
Match: A0A0C2CZX5_9BILA (Pept_C1 domain-containing protein n=2 Tax=Strongylida TaxID=6308 RepID=A0A0C2CZX5_9BILA)

HSP 1 Score: 94.7 bits (234), Expect = 2.930e-24
Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 1
Query:   13 AGSFMGGHAVKMIGWGTDEASGEDYWLIANSWNPSWGEGGLFRILRGVNECGIEGQIVAGE 195
            AG  +GGHAVKMIGWGT+  +G  YW+ ANSWN  WGE G FRI+RG+NECGIE  +VAGE
Sbjct:    6 AGQMLGGHAVKMIGWGTE--NGTPYWICANSWNSDWGENGFFRIIRGLNECGIESGVVAGE 64          
BLAST of mRNA_Ecto-sp13_S_contig56552.16008.1 vs. uniprot
Match: A0A7S1TV86_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TV86_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 8.450e-24
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 1
Query:   16 GSFMGGHAVKMIGWGTDEASGEDYWLIANSWNPSWGEGGLFRILRGVNECGIEGQIVA 189
            G+  GGHAVK +GWG D+A+G  YW +ANSWNP WGE G FRILRGVNECGIE ++ A
Sbjct:   49 GNNAGGHAVKFVGWGVDQATGTKYWKVANSWNPYWGEDGYFRILRGVNECGIENEVTA 106          
BLAST of mRNA_Ecto-sp13_S_contig56552.16008.1 vs. uniprot
Match: A0A7S1AUC0_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AUC0_NOCSC)

HSP 1 Score: 94.7 bits (234), Expect = 1.450e-23
Identity = 40/62 (64.52%), Postives = 51/62 (82.26%), Query Frame = 1
Query:   13 AGSFMGGHAVKMIGWGTDEASGEDYWLIANSWNPSWGEGGLFRILRGVNECGIEGQIVAGEV 198
            +GS +GGHA+K+ GWGT+++  EDYWL+ANSWN  WG+ G F+I RGVNECGIEGQ+ AG V
Sbjct:   60 SGSQLGGHAIKIFGWGTEDS--EDYWLVANSWNDQWGDHGTFKIRRGVNECGIEGQVSAGTV 119          
BLAST of mRNA_Ecto-sp13_S_contig56552.16008.1 vs. uniprot
Match: A0A2T7PGR8_POMCA (Pept_C1 domain-containing protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PGR8_POMCA)

HSP 1 Score: 98.6 bits (244), Expect = 3.590e-23
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 1
Query:   13 AGSFMGGHAVKMIGWGTDEASGEDYWLIANSWNPSWGEGGLFRILRGVNECGIEGQIVAGE 195
            +GS +GGHAVK++G+G +  SGE YWL+ANSWNP WG+ G F+ILRGVNECGIE QIVAGE
Sbjct:  271 SGSVLGGHAVKILGYGVE--SGEKYWLVANSWNPDWGDAGFFKILRGVNECGIESQIVAGE 329          
BLAST of mRNA_Ecto-sp13_S_contig56552.16008.1 vs. uniprot
Match: A6N1G1_ORYSI (Cathepsin b-like cysteine proteinase 3 (Fragment) n=1 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=A6N1G1_ORYSI)

HSP 1 Score: 94.0 bits (232), Expect = 4.620e-23
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 1
Query:   16 GSFMGGHAVKMIGWGTDEASGEDYWLIANSWNPSWGEGGLFRILRGVNECGIEGQIVAG 192
            G  MGGHAVK+IGWGT +A GEDYWL+AN WN  WG+ G F+I+RG NECGIE  +VAG
Sbjct:   63 GGMMGGHAVKLIGWGTTDA-GEDYWLLANQWNRGWGDDGYFKIIRGTNECGIEEDVVAG 120          
BLAST of mRNA_Ecto-sp13_S_contig56552.16008.1 vs. uniprot
Match: A0A5J4N2D7_9TREM (Cathepsin B (Fragment) n=1 Tax=Paragonimus westermani TaxID=34504 RepID=A0A5J4N2D7_9TREM)

HSP 1 Score: 92.4 bits (228), Expect = 5.180e-23
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 1
Query:   13 AGSFMGGHAVKMIGWGTDEASGEDYWLIANSWNPSWGEGGLFRILRGVNECGIEGQIVAG 192
            AG +MGGHAVK++GWG    +G  YWL+ANSWN  WGE G FRILRGV+ECGIE  +VAG
Sbjct:   32 AGEYMGGHAVKLLGWGV--TNGTKYWLLANSWNEDWGEKGFFRILRGVDECGIESDVVAG 89          
BLAST of mRNA_Ecto-sp13_S_contig56552.16008.1 vs. uniprot
Match: A0A3P7N885_CYLGO (Pept_C1 domain-containing protein n=1 Tax=Cylicostephanus goldi TaxID=71465 RepID=A0A3P7N885_CYLGO)

HSP 1 Score: 95.1 bits (235), Expect = 6.570e-23
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 1
Query:   13 AGSFMGGHAVKMIGWGTDEASGEDYWLIANSWNPSWGEGGLFRILRGVNECGIEGQIVAGE 195
            AG  +GGHAVKMIGWGT+  +G  YW+IANSWN  WGE G FRI+RG+NECGIE  +VAGE
Sbjct:  137 AGKELGGHAVKMIGWGTE--NGTPYWIIANSWNSDWGENGFFRIVRGLNECGIESGVVAGE 195          
BLAST of mRNA_Ecto-sp13_S_contig56552.16008.1 vs. uniprot
Match: UPI000BE597D7 (cathepsin B-like protease 2 n=1 Tax=Setaria italica TaxID=4555 RepID=UPI000BE597D7)

HSP 1 Score: 95.9 bits (237), Expect = 7.240e-23
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 1
Query:   16 GSFMGGHAVKMIGWGTDEASGEDYWLIANSWNPSWGEGGLFRILRGVNECGIEGQIVAG 192
            G  MGGHAVK+IGWGT +A GEDYWL+AN WN  WG+ G F+I+RGVNECGIE  +VAG
Sbjct:  157 GGIMGGHAVKLIGWGTSDA-GEDYWLLANQWNRGWGDDGYFKIIRGVNECGIEEDVVAG 214          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56552.16008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LCY9_9PHAE5.160e-3596.77Pept_C1 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835ZA77_9STRA1.310e-2476.27Cathepsin B-like proteinase n=1 Tax=Tribonema minu... [more]
A0A0C2CZX5_9BILA2.930e-2467.21Pept_C1 domain-containing protein n=2 Tax=Strongyl... [more]
A0A7S1TV86_9STRA8.450e-2467.24Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1AUC0_NOCSC1.450e-2364.52Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A2T7PGR8_POMCA3.590e-2370.49Pept_C1 domain-containing protein n=1 Tax=Pomacea ... [more]
A6N1G1_ORYSI4.620e-2367.80Cathepsin b-like cysteine proteinase 3 (Fragment) ... [more]
A0A5J4N2D7_9TREM5.180e-2366.67Cathepsin B (Fragment) n=1 Tax=Paragonimus westerm... [more]
A0A3P7N885_CYLGO6.570e-2368.85Pept_C1 domain-containing protein n=1 Tax=Cylicost... [more]
UPI000BE597D77.240e-2369.49cathepsin B-like protease 2 n=1 Tax=Setaria italic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56552contigEcto-sp13_S_contig56552:648..848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score132.9
Seed ortholog evalue5.6e-29
Seed eggNOG ortholog2880.D8LG82
Model size201
KEGG koko:K01363
KEGG Pathwayko04140,ko04142,ko04210,ko04612,ko04621,ko04924,map04140,map04142,map04210,map04612,map04621,map04924
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.transferase activity, transferring glycosyl groups
EggNOG OGsCOG4870@1,KOG1543@2759
EC3.4.22.1
Cds size201
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko01000,ko01002,ko03110,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463783.4172235-CDS-Ecto-sp13_S_contig56552:647..8481681463783.4172235-CDS-Ecto-sp13_S_contig56552:647..848Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56552 648..848 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56552.16008.1prot_Ecto-sp13_S_contig56552.16008.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56552 648..848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56552.16008.1

>prot_Ecto-sp13_S_contig56552.16008.1 ID=prot_Ecto-sp13_S_contig56552.16008.1|Name=mRNA_Ecto-sp13_S_contig56552.16008.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=67bp
MPKYAGSFMGGHAVKMIGWGTDEASGEDYWLIANSWNPSWGEGGLFRILR
GVNECGIEGQIVAGEV*
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mRNA from alignment at Ecto-sp13_S_contig56552:648..848+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56552.16008.1 ID=mRNA_Ecto-sp13_S_contig56552.16008.1|Name=mRNA_Ecto-sp13_S_contig56552.16008.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56552:648..848+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCAAAATATGCAGGTTCGTTCATGGGGGGGCACGCGGTGAAGATGAT CGGGTGGGGCACGGACGAGGCGAGCGGCGAAGACTACTGGCTCATCGCCA ACTCCTGGAACCCGTCGTGGGGGGAGGGTGGTCTCTTCCGTATCCTTCGC GGCGTGAACGAGTGCGGAATCGAGGGCCAGATCGTGGCCGGCGAGGTGTA A
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56552:648..848+

>mRNA_Ecto-sp13_S_contig56552.16008.1 ID=mRNA_Ecto-sp13_S_contig56552.16008.1|Name=mRNA_Ecto-sp13_S_contig56552.16008.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=201bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56552:648..848+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCAAAATATGCAGGTTCGTTCATGGGGGGGCACGCGGTGAAGATGAT
CGGGTGGGGCACGGACGAGGCGAGCGGCGAAGACTACTGGCTCATCGCCA
ACTCCTGGAACCCGTCGTGGGGGGAGGGTGGTCTCTTCCGTATCCTTCGC
GGCGTGAACGAGTGCGGAATCGAGGGCCAGATCGTGGCCGGCGAGGTGTA
A
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