mRNA_Ecto-sp13_S_contig5653.16002.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5653.16002.1
Unique NamemRNA_Ecto-sp13_S_contig5653.16002.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5653.16002.1 vs. uniprot
Match: D7FKB8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKB8_ECTSI)

HSP 1 Score: 635 bits (1639), Expect = 3.280e-228
Identity = 315/342 (92.11%), Postives = 319/342 (93.27%), Query Frame = 1 
Query:    1 MAPKNSPPSKGKEAVKDLKTSASPIAVAQEQVAHTFGKLTDVIQELQDAVEKERVAVDTDKLNKPGHGAHNFGQPILPLGELKDIIDDTMTNALYAFIDKFTQFPKAAGIPQLLLPRLFLECFNDVQEHYRQFIEPILFPNGSKTNSALLRDHLSNNCHELFLLTPSEKRDRTVQHILGNIGEHLRTQRTFADNELNWVINETGLDVLVHKYREIMVHVRLQPTPATFSTDCGMLLEVVKKKTWSLTAQQPAAAGVQPFDPKRHSPSVDAMGTSEGALCVVVFPAMEVDGARCTISYTLCLDRHQAKLVAAPGQNPTRQPLNQVDVHIMPVRDQLDIWNSTP 1026
            MAPKNSPPSKGKEAVKDLK SASPIAVAQ QVAHTFGKLTDVIQELQDAVEKERVAVDTDKLNKPGHGAHNFGQPILPLG+LKD IDDTMTN LYAFIDKF QFPK AGIPQLLLPRLFLECFNDVQEHYRQFIEPILFPNGSKT+ ALLRDHLSNN  ELFLLTPSEKRDRTVQHILGNIG HLRTQRTFADN LNWVINETGLD LVHKYREIMVHVRLQPTPATFSTDCGM LEVVKKK WSLT QQP AAGVQPFDPKRHS SVDAMGTSEG LCVVVFPAMEVDG RC ISYTL LDRHQA+LVA PGQNPTRQP NQVDVHIMPVRDQLD+WNSTP
Sbjct:    1 MAPKNSPPSKGKEAVKDLKASASPIAVAQAQVAHTFGKLTDVIQELQDAVEKERVAVDTDKLNKPGHGAHNFGQPILPLGDLKDRIDDTMTNTLYAFIDKFNQFPKTAGIPQLLLPRLFLECFNDVQEHYRQFIEPILFPNGSKTDPALLRDHLSNNYQELFLLTPSEKRDRTVQHILGNIGGHLRTQRTFADNGLNWVINETGLDALVHKYREIMVHVRLQPTPATFSTDCGMFLEVVKKKPWSLTVQQPTAAGVQPFDPKRHSSSVDAMGTSEGDLCVVVFPAMEVDGVRCNISYTLSLDRHQAELVATPGQNPTRQPPNQVDVHIMPVRDQLDVWNSTP 342
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BLAST of mRNA_Ecto-sp13_S_contig5653.16002.1 vs. uniprot
Match: A0A6H5KQQ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ4_9PHAE)

HSP 1 Score: 502 bits (1293), Expect = 4.410e-177
Identity = 256/292 (87.67%), Postives = 262/292 (89.73%), Query Frame = 1 
Query:    1 MAPKNSPPSKGKEAVKDLKTSASPIAVAQEQVAHTFGKLTDVIQELQDAVEKERVAVDTDKLNKPGHGAHNFGQPILPLGELKDIIDDTMTNALYAFIDKFTQFPKAAGIPQLLLPRLFLECFNDVQEHYRQFIEPILFPNGSKTNSALLRDHLSNNCHELFLLTPSEKRDRTVQHILGNIGEHLRTQRTFADNELNWVINETGLDVLVHKYREIMVHVRLQPTPATFSTDCGMLLEVVKKKTWSLTAQQPAAAGVQPFDPKRHSPSVDAMGTSEGALCVVVFPAMEVDGAR 876
            MAPKNSPPSKGKEAVKDLK SASPIAVAQ QVA TFGKLTDVIQELQDAVEKERVAVDTDKLNKPGHGAHNFGQPILPLG+LK  IDDTMTNALYAFIDKF QFPKAAGIPQLLLPRLFLECFNDVQEHYRQFIEPILFPNGSKTN ALLRDHLSNN  ELFLLTPSEKR+RTVQ ILGNIG HLRTQR FADN+LNWVINETGLD LV KYREIMVHVRLQPTP TFS DCGM LEVVKK  +   ++ P AAGVQPFDPK HS SVDAMGT EG LCVVVFP MEV GAR
Sbjct:    1 MAPKNSPPSKGKEAVKDLKASASPIAVAQAQVAQTFGKLTDVIQELQDAVEKERVAVDTDKLNKPGHGAHNFGQPILPLGDLKGRIDDTMTNALYAFIDKFNQFPKAAGIPQLLLPRLFLECFNDVQEHYRQFIEPILFPNGSKTNPALLRDHLSNNYQELFLLTPSEKRNRTVQQILGNIGGHLRTQRPFADNDLNWVINETGLDALVLKYREIMVHVRLQPTPTTFSADCGMFLEVVKKNKF-FNSKAPTAAGVQPFDPKHHSSSVDAMGTIEGDLCVVVFPGMEVGGAR 291
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BLAST of mRNA_Ecto-sp13_S_contig5653.16002.1 vs. uniprot
Match: A0A6H5JWR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR0_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 3.620e-5
Identity = 36/90 (40.00%), Postives = 41/90 (45.56%), Query Frame = 1 
Query:  631 KYREIMVHVRLQPTPATFST-DCGMLLEVVKKKTWSLTAQQPAAAGVQPFDPKRHSPSVDAMGTSEGALCVVVFPAMEVDGARCTISYTL 897
            +Y  IMV+VRLQ  P TFST DCG                      VQ FDP  HS  V   G   G  C+ VFPA+      CT+ YTL
Sbjct:    4 QYMVIMVNVRLQYPPVTFSTTDCGK---------------------VQQFDPDLHS-DVGGEGVRRGQECITVFPAIMTGEKICTVGYTL 71
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5653.16002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FKB8_ECTSI3.280e-22892.11Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KQQ4_9PHAE4.410e-17787.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWR0_9PHAE3.620e-540.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5653contigEcto-sp13_S_contig5653:3..1753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1026
Hectar predicted targeting categoryother localisation
Exons2
Cds size1026
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463783.095719-CDS-Ecto-sp13_S_contig5653:2..911681463783.095719-CDS-Ecto-sp13_S_contig5653:2..91Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5653 3..91 -
1681463783.1133723-CDS-Ecto-sp13_S_contig5653:816..17531681463783.1133723-CDS-Ecto-sp13_S_contig5653:816..1753Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5653 817..1753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5653.16002.1prot_Ecto-sp13_S_contig5653.16002.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5653 3..1753 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5653.16002.1

>prot_Ecto-sp13_S_contig5653.16002.1 ID=prot_Ecto-sp13_S_contig5653.16002.1|Name=mRNA_Ecto-sp13_S_contig5653.16002.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=342bp
MAPKNSPPSKGKEAVKDLKTSASPIAVAQEQVAHTFGKLTDVIQELQDAV
EKERVAVDTDKLNKPGHGAHNFGQPILPLGELKDIIDDTMTNALYAFIDK
FTQFPKAAGIPQLLLPRLFLECFNDVQEHYRQFIEPILFPNGSKTNSALL
RDHLSNNCHELFLLTPSEKRDRTVQHILGNIGEHLRTQRTFADNELNWVI
NETGLDVLVHKYREIMVHVRLQPTPATFSTDCGMLLEVVKKKTWSLTAQQ
PAAAGVQPFDPKRHSPSVDAMGTSEGALCVVVFPAMEVDGARCTISYTLC
LDRHQAKLVAAPGQNPTRQPLNQVDVHIMPVRDQLDIWNSTP
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mRNA from alignment at Ecto-sp13_S_contig5653:3..1753-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5653.16002.1 ID=mRNA_Ecto-sp13_S_contig5653.16002.1|Name=mRNA_Ecto-sp13_S_contig5653.16002.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1751bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5653:3..1753- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCCAAAGAATTCACCACCCTCAAAGGGAAAAGAAGCAGTCAAGGA
CCTGAAGACCTCGGCAAGTCCCATCGCTGTGGCTCAGGAACAAGTAGCGC
ACACGTTCGGCAAGCTAACGGATGTGATACAAGAGTTACAAGATGCGGTT
GAGAAGGAGCGCGTGGCGGTGGACACGGATAAGCTCAACAAACCAGGCCA
TGGCGCCCACAACTTTGGTCAGCCCATCCTCCCTTTGGGCGAACTGAAGG
ACATAATCGACGACACGATGACCAACGCGCTGTACGCCTTCATCGACAAG
TTCACCCAGTTTCCGAAGGCCGCCGGCATCCCCCAGCTGCTGCTGCCGCG
GTTGTTTCTGGAATGCTTCAACGACGTCCAGGAACATTACCGCCAGTTCA
TCGAGCCCATCTTATTTCCCAACGGTTCGAAGACAAATTCCGCCCTACTG
CGTGACCACCTGTCGAACAACTGCCATGAACTCTTTCTCCTGACGCCGAG
CGAGAAACGCGACCGCACCGTCCAGCATATTCTCGGCAATATTGGTGAGC
ACCTTCGTACTCAACGCACTTTTGCAGACAATGAGCTCAATTGGGTCATC
AATGAAACCGGTCTCGATGTATTGGTGCACAAATACCGGGAGATAATGGT
CCACGTGCGCCTTCAACCAACTCCGGCAACCTTCAGCACTGACTGCGGGA
TGCTCCTGGAAGTAGTAAAGAAAAAAACGTGGAGTTTGACCGCACAACAA
CCCGCGGCCGCCGGGGTGCAGCCTTTCGACCCCAAACGTCATTCGCCATC
TGTAGACGCCATGGGCACTTCGGAAGGAGCCTTGTGCGTTGTGGTGTTTC
CCGCCATGGAAGTGGACGGGGCAAGGTGCACCATCAGCTATACGTTGTGC
TTGGACCGGCATCAGGCAAAGCTCGTCGCCGCACCAGGTTTGTATTTGTG
TTTGTTTTTTCGTTGGATTTCCCCGCCACATGGCTCGCCGTCAGTTACTA
CGTACACAGGACCAGCACGAAGAGAATGTACAATGTACTTCGTACGTATG
TGGCGAATGAATTACACAACCGTGCCAAAATAGCACACCTGAAACAAAAT
CATCCCAACACCTTCCTTCTACACCTTCCCAGCATAATAAATAAAAAGTA
TACACATGACGGCTACCAAACGGTCTTCTTGTTGCCTGTTACCCACAGGA
GAGGTATTGCTGTATGCTACTAAATATGTAGGAAACCACAGAAATGTTAT
CTAGGTAGCTGCGCCGACGTTATGAATAACTTGCTAATCAATCTTTGACT
CTTTTTTTTTTCTGTGCATAGAGATGGATTAGATATGTTGTATTAAAAAA
AAATGTAAACAGAGTGGAATGTGTATGACTTTCTGCAAAACATCCCGCCA
GGCACAACACGATCTACTCCATCCAGCTCCCTCATGCTGCCGATGTTGTT
TTCAATACGGTACAACCTTGCGAGCGTTTTTCGTGAGCGCAGCCCCAATC
CTAAACTTGTTTCGTCTCCTGGTCGTGTCACCAACACAGCCCAGCCGATG
AGGGTTTACTCGTTTTCAGGGTTCAATCTTGCAGTGCAAGAAGTATTAAG
TTGAGTTCGCACCACTCACTGTTTGCACCCGACCCCTACCTCGTCCTCGG
CGACTATTCTAGGTCAAAACCCGACCCGGCAACCTCTCAATCAAGTCGAC
GTGCACATTATGCCCGTGCGGGACCAACTCGATATTTGGAACTCCACCCC
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5653:3..1753-

>mRNA_Ecto-sp13_S_contig5653.16002.1 ID=mRNA_Ecto-sp13_S_contig5653.16002.1|Name=mRNA_Ecto-sp13_S_contig5653.16002.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1026bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5653:3..1753- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCCAAAGAATTCACCACCCTCAAAGGGAAAAGAAGCAGTCAAGGA
CCTGAAGACCTCGGCAAGTCCCATCGCTGTGGCTCAGGAACAAGTAGCGC
ACACGTTCGGCAAGCTAACGGATGTGATACAAGAGTTACAAGATGCGGTT
GAGAAGGAGCGCGTGGCGGTGGACACGGATAAGCTCAACAAACCAGGCCA
TGGCGCCCACAACTTTGGTCAGCCCATCCTCCCTTTGGGCGAACTGAAGG
ACATAATCGACGACACGATGACCAACGCGCTGTACGCCTTCATCGACAAG
TTCACCCAGTTTCCGAAGGCCGCCGGCATCCCCCAGCTGCTGCTGCCGCG
GTTGTTTCTGGAATGCTTCAACGACGTCCAGGAACATTACCGCCAGTTCA
TCGAGCCCATCTTATTTCCCAACGGTTCGAAGACAAATTCCGCCCTACTG
CGTGACCACCTGTCGAACAACTGCCATGAACTCTTTCTCCTGACGCCGAG
CGAGAAACGCGACCGCACCGTCCAGCATATTCTCGGCAATATTGGTGAGC
ACCTTCGTACTCAACGCACTTTTGCAGACAATGAGCTCAATTGGGTCATC
AATGAAACCGGTCTCGATGTATTGGTGCACAAATACCGGGAGATAATGGT
CCACGTGCGCCTTCAACCAACTCCGGCAACCTTCAGCACTGACTGCGGGA
TGCTCCTGGAAGTAGTAAAGAAAAAAACGTGGAGTTTGACCGCACAACAA
CCCGCGGCCGCCGGGGTGCAGCCTTTCGACCCCAAACGTCATTCGCCATC
TGTAGACGCCATGGGCACTTCGGAAGGAGCCTTGTGCGTTGTGGTGTTTC
CCGCCATGGAAGTGGACGGGGCAAGGTGCACCATCAGCTATACGTTGTGC
TTGGACCGGCATCAGGCAAAGCTCGTCGCCGCACCAGGTCAAAACCCGAC
CCGGCAACCTCTCAATCAAGTCGACGTGCACATTATGCCCGTGCGGGACC
AACTCGATATTTGGAACTCCACCCCG
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