mRNA_Ecto-sp13_S_contig56528.16001.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56528.16001.1
Unique NamemRNA_Ecto-sp13_S_contig56528.16001.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig56528.16001.1 vs. uniprot
Match: D7FT60_ECTSI (Nitroreductase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT60_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 3.850e-18
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 1
Query:    4 RKVLALVLRAPSGFNIQPYECIVVTSDEAKQKLSRAMLGQNRER 135
            +KVLALVLRAPSGFNIQPYECIVVTSDEAK KLSRAMLG NRER
Sbjct:  100 KKVLALVLRAPSGFNIQPYECIVVTSDEAKHKLSRAMLGPNRER 143          
BLAST of mRNA_Ecto-sp13_S_contig56528.16001.1 vs. uniprot
Match: M4BXH7_HYAAE (Nitroreductase domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BXH7_HYAAE)

HSP 1 Score: 53.9 bits (128), Expect = 3.230e-7
Identity = 22/40 (55.00%), Postives = 30/40 (75.00%), Query Frame = 1
Query:    7 KVLALVLRAPSGFNIQPYECIVVTSDEAKQKLSRAMLGQN 126
            K+L L LRAP+GFN QPY C++V   + ++KLS AM+G N
Sbjct:   61 KILKLTLRAPTGFNTQPYACVLVREQKDREKLSEAMMGGN 100          
BLAST of mRNA_Ecto-sp13_S_contig56528.16001.1 vs. uniprot
Match: A0A448ZDJ0_9STRA (Nitroreductase domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDJ0_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 3.720e-7
Identity = 22/43 (51.16%), Postives = 34/43 (79.07%), Query Frame = 1
Query:    7 KVLALVLRAPSGFNIQPYECIVVTSDEAKQKLSRAMLGQNRER 135
            + L L  RAP+GFN+QPY+ ++VTS  AK++LSR  +G+N++R
Sbjct:  161 EALDLACRAPTGFNVQPYKLLIVTSPAAKERLSRFCIGRNKDR 203          
BLAST of mRNA_Ecto-sp13_S_contig56528.16001.1 vs. uniprot
Match: D0NC21_PHYIT (Nitroreductase family, putative n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0NC21_PHYIT)

HSP 1 Score: 51.2 bits (121), Expect = 3.190e-6
Identity = 19/41 (46.34%), Postives = 31/41 (75.61%), Query Frame = 1
Query:    4 RKVLALVLRAPSGFNIQPYECIVVTSDEAKQKLSRAMLGQN 126
            +++L L LRAP+GFN+QPY C++V   + ++KL+ AM+  N
Sbjct:   85 KEILKLTLRAPTGFNVQPYACVLVREPKDREKLAEAMMDSN 125          
BLAST of mRNA_Ecto-sp13_S_contig56528.16001.1 vs. uniprot
Match: A0A4D9DF56_9STRA (Nitroreductase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DF56_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.480e-6
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 1
Query:   10 VLALVLRAPSGFNIQPYECIVVTSDEAKQKLSRAMLGQNRER 135
            +LAL LR P+ FN+QPY   +V S++ KQKL+  MLG N  R
Sbjct:  103 ILALTLRCPTSFNVQPYTVTIVQSEDMKQKLAACMLGPNSAR 144          
BLAST of mRNA_Ecto-sp13_S_contig56528.16001.1 vs. uniprot
Match: A0A6G0XIZ5_9STRA (Nitroreductase domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XIZ5_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 5.180e-6
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1
Query:   10 VLALVLRAPSGFNIQPYECIVVTSDEAKQKLSRAMLGQN 126
            VL    RAPSGFN+QPY C+VV   + + +LS AMLG N
Sbjct:   31 VLQTTQRAPSGFNLQPYACVVVQDPDERAQLSTAMLGDN 69          
BLAST of mRNA_Ecto-sp13_S_contig56528.16001.1 vs. uniprot
Match: A0A6A3XAN9_9STRA (Nitroreductase domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XAN9_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 5.760e-6
Identity = 20/41 (48.78%), Postives = 30/41 (73.17%), Query Frame = 1
Query:    4 RKVLALVLRAPSGFNIQPYECIVVTSDEAKQKLSRAMLGQN 126
            +++L L LRAP+GFN QPY C++V   + ++KL+ AML  N
Sbjct:   61 QEILKLTLRAPTGFNTQPYACVLVREQKDREKLAEAMLDSN 101          
BLAST of mRNA_Ecto-sp13_S_contig56528.16001.1 vs. uniprot
Match: A0A3R7NF45_9STRA (Nitroreductase domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NF45_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 5.890e-6
Identity = 20/41 (48.78%), Postives = 29/41 (70.73%), Query Frame = 1
Query:    4 RKVLALVLRAPSGFNIQPYECIVVTSDEAKQKLSRAMLGQN 126
            +++L L LRAP+GFN QPY C+VV     ++KL+ AM+  N
Sbjct:   54 QEILKLTLRAPTGFNTQPYACVVVRKQADREKLAEAMMASN 94          
BLAST of mRNA_Ecto-sp13_S_contig56528.16001.1 vs. uniprot
Match: A0A6V3NKW6_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6V3NKW6_9EUKA)

HSP 1 Score: 50.4 bits (119), Expect = 6.250e-6
Identity = 21/44 (47.73%), Postives = 33/44 (75.00%), Query Frame = 1
Query:    4 RKVLALVLRAPSGFNIQPYECIVVTSDEAKQKLSRAMLGQNRER 135
            ++VLA+ LRAPS FNIQPY+ ++V  ++ K +LS AM   N+++
Sbjct:  237 KQVLAMTLRAPSSFNIQPYKILIVQDEQLKLRLSSAMFDLNKQK 280          
BLAST of mRNA_Ecto-sp13_S_contig56528.16001.1 vs. uniprot
Match: A0A1E7EVJ2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVJ2_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 8.540e-6
Identity = 20/45 (44.44%), Postives = 33/45 (73.33%), Query Frame = 1
Query:    1 SRKVLALVLRAPSGFNIQPYECIVVTSDEAKQKLSRAMLGQNRER 135
            +R  L L +RAPSGFN+QPY+ +++ +  +K KLS+  +G+N +R
Sbjct:  152 ARTALQLAIRAPSGFNVQPYKMVMINTPSSKLKLSKYCIGRNIDR 196          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56528.16001.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FT60_ECTSI3.850e-1893.18Nitroreductase-like protein n=1 Tax=Ectocarpus sil... [more]
M4BXH7_HYAAE3.230e-755.00Nitroreductase domain-containing protein n=1 Tax=H... [more]
A0A448ZDJ0_9STRA3.720e-751.16Nitroreductase domain-containing protein n=1 Tax=P... [more]
D0NC21_PHYIT3.190e-646.34Nitroreductase family, putative n=3 Tax=Phytophtho... [more]
A0A4D9DF56_9STRA4.480e-652.38Nitroreductase domain-containing protein n=2 Tax=M... [more]
A0A6G0XIZ5_9STRA5.180e-656.41Nitroreductase domain-containing protein n=1 Tax=A... [more]
A0A6A3XAN9_9STRA5.760e-648.78Nitroreductase domain-containing protein n=3 Tax=P... [more]
A0A3R7NF45_9STRA5.890e-648.78Nitroreductase domain-containing protein n=3 Tax=P... [more]
A0A6V3NKW6_9EUKA6.250e-647.73Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A1E7EVJ2_9STRA8.540e-644.44Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56528contigEcto-sp13_S_contig56528:753..890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score83.6
Seed ortholog evalue2.7e-14
Seed eggNOG ortholog2880.D7FT60
Model size138
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Nitroreductase family
EggNOG OGs2RZ0D@2759,COG0778@1
Cds size138
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463783.0547614-CDS-Ecto-sp13_S_contig56528:752..8901681463783.0547614-CDS-Ecto-sp13_S_contig56528:752..890Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56528 753..890 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56528.16001.1prot_Ecto-sp13_S_contig56528.16001.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56528 753..890 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56528.16001.1

>prot_Ecto-sp13_S_contig56528.16001.1 ID=prot_Ecto-sp13_S_contig56528.16001.1|Name=mRNA_Ecto-sp13_S_contig56528.16001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
SRKVLALVLRAPSGFNIQPYECIVVTSDEAKQKLSRAMLGQNRER*
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mRNA from alignment at Ecto-sp13_S_contig56528:753..890-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56528.16001.1 ID=mRNA_Ecto-sp13_S_contig56528.16001.1|Name=mRNA_Ecto-sp13_S_contig56528.16001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56528:753..890- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCGGAAGGTGTTGGCGCTAGTCTTGCGAGCCCCCTCCGGGTTCAACAT CCAGCCGTACGAGTGCATCGTGGTGACTTCCGACGAGGCCAAGCAGAAGC TCAGCAGGGCCATGTTAGGTCAGAACCGAGAGAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56528:753..890-

>mRNA_Ecto-sp13_S_contig56528.16001.1 ID=mRNA_Ecto-sp13_S_contig56528.16001.1|Name=mRNA_Ecto-sp13_S_contig56528.16001.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56528:753..890- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCGGAAGGTGTTGGCGCTAGTCTTGCGAGCCCCCTCCGGGTTCAACAT
CCAGCCGTACGAGTGCATCGTGGTGACTTCCGACGAGGCCAAGCAGAAGC
TCAGCAGGGCCATGTTAGGTCAGAACCGAGAGAGGTGA
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