mRNA_Ecto-sp13_S_contig5649.15996.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5649.15996.1
Unique NamemRNA_Ecto-sp13_S_contig5649.15996.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5649.15996.1 vs. uniprot
Match: D8LRE9_ECTSI (Transmembrane receptor kinase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE9_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.400e-6
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = -1 
Query:    2 KIGDFGTSRWSQHTNSTGLATYTTKS 79
            KIGDFGTSRWSQHTNSTGLATYTT+S
Sbjct:  821 KIGDFGTSRWSQHTNSTGLATYTTRS 846
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BLAST of mRNA_Ecto-sp13_S_contig5649.15996.1 vs. uniprot
Match: D7G7X7_ECTSI (ATP binding / amino acid binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7X7_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 1.410e-6
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = -1 
Query:    5 KIGDFGTSRWSQHTNSTGLATYTTK 79
            KIGDFGTSRWSQHTNSTGLATYTTK
Sbjct:  946 KIGDFGTSRWSQHTNSTGLATYTTK 970
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BLAST of mRNA_Ecto-sp13_S_contig5649.15996.1 vs. uniprot
Match: A0A6H5KF25_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF25_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.410e-6
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = -1 
Query:    5 KIGDFGTSRWSQHTNSTGLATYTTK 79
            KIGDFGTSRWSQHTNSTGLATYTTK
Sbjct:  971 KIGDFGTSRWSQHTNSTGLATYTTK 995
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BLAST of mRNA_Ecto-sp13_S_contig5649.15996.1 vs. uniprot
Match: D8LAU2_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU2_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 3.220e-6
Identity = 24/26 (92.31%), Postives = 26/26 (100.00%), Query Frame = -1 
Query:    2 KIGDFGTSRWSQHTNSTGLATYTTKS 79
            KIGDFGTSRW+QHTNSTGLATYTT+S
Sbjct:  258 KIGDFGTSRWAQHTNSTGLATYTTRS 283
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BLAST of mRNA_Ecto-sp13_S_contig5649.15996.1 vs. uniprot
Match: D8LHV1_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV1_ECTSI)

HSP 1 Score: 51.6 bits (122), Expect = 3.150e-5
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = -1 
Query:    8 KIGDFGTSRWSQHTNSTGLATYTT 79
            KIGDFGTSRWSQHT+STGLATYTT
Sbjct:  960 KIGDFGTSRWSQHTHSTGLATYTT 983
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5649.15996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LRE9_ECTSI1.400e-696.15Transmembrane receptor kinase n=2 Tax=Ectocarpus s... [more]
D7G7X7_ECTSI1.410e-6100.00ATP binding / amino acid binding / protein kinase/... [more]
A0A6H5KF25_9PHAE1.410e-6100.00Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LAU2_ECTSI3.220e-692.31Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LHV1_ECTSI3.150e-595.83Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5649contigEcto-sp13_S_contig5649:3413..3746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size335
Hectar predicted targeting categoryother localisation
Exons1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463782.4235942-CDS-Ecto-sp13_S_contig5649:3412..37301681463782.4235942-CDS-Ecto-sp13_S_contig5649:3412..3730Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5649 3413..3730 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463782.4354362-UTR-Ecto-sp13_S_contig5649:3730..37461681463782.4354362-UTR-Ecto-sp13_S_contig5649:3730..3746Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5649 3731..3746 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5649.15996.1prot_Ecto-sp13_S_contig5649.15996.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5649 3413..3730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5649.15996.1

>prot_Ecto-sp13_S_contig5649.15996.1 ID=prot_Ecto-sp13_S_contig5649.15996.1|Name=mRNA_Ecto-sp13_S_contig5649.15996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
WTWWCTWPDPWSSCAETNGKCQSPRSLAFARDSSVSDTVVDGSDETQQNP
ADNSLRLCHRSCDAAVATLRSLKCLRRLKVSSTTQGDIASSTALCPHLGP
TGAIE*
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mRNA from alignment at Ecto-sp13_S_contig5649:3413..3746+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5649.15996.1 ID=mRNA_Ecto-sp13_S_contig5649.15996.1|Name=mRNA_Ecto-sp13_S_contig5649.15996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=334bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5649:3413..3746+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGACTTGGTGGTGTACGTGGCCAGACCCGTGGAGTTCGTGTGCTGAGAC
CAACGGGAAGTGCCAAAGTCCCCGATCTTTGGCATTCGCACGCGACAGCA
GTGTGTCAGACACCGTTGTGGATGGTAGCGACGAGACACAGCAGAACCCA
GCCGATAATTCACTCAGGCTCTGCCACAGATCCTGTGACGCTGCTGTTGC
AACTCTGAGAAGTTTAAAGTGCTTAAGGCGTCTCAAAGTGTCGAGCACAA
CACAGGGTGACATAGCATCTTCTACAGCTCTTTGTCCTCACCTTGGCCCT
ACCGGCGCCATCGAGTAGCACGTTAGCGGACTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5649:3413..3746+

>mRNA_Ecto-sp13_S_contig5649.15996.1 ID=mRNA_Ecto-sp13_S_contig5649.15996.1|Name=mRNA_Ecto-sp13_S_contig5649.15996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5649:3413..3746+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGACTTGGTGGTGTACGTGGCCAGACCCGTGGAGTTCGTGTGCTGAGAC
CAACGGGAAGTGCCAAAGTCCCCGATCTTTGGCATTCGCACGCGACAGCA
GTGTGTCAGACACCGTTGTGGATGGTAGCGACGAGACACAGCAGAACCCA
GCCGATAATTCACTCAGGCTCTGCCACAGATCCTGTGACGCTGCTGTTGC
AACTCTGAGAAGTTTAAAGTGCTTAAGGCGTCTCAAAGTGTCGAGCACAA
CACAGGGTGACATAGCATCTTCTACAGCTCTTTGTCCTCACCTTGGCCCT
ACCGGCGCCATCGAGTAG
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