mRNA_Ecto-sp13_S_contig5648.15994.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5648.15994.1 vs. uniprot
Match: D7FLA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLA8_ECTSI) HSP 1 Score: 491 bits (1264), Expect = 4.660e-172 Identity = 245/280 (87.50%), Postives = 265/280 (94.64%), Query Frame = 1
Query: 1 AVDNNTKSRKSDSQRTGCGCKINIRWPMKTDVYKHPRLTTMELEHLHAVDKEAADVQQAQKGPLTTPVKATSAKLTDAGLKPAAQAVVIEALHDRRVHPRTMQNEQGRKPTSEWPEGAKPTWAVALNHKALSEGEKQAPLVATGRLQCATEGDEGGGGAGAGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSY 840
+ DN+TKSR+SDSQRTGC CKINIRWP+KTDV++HPRLTTM+LEHLH VDKEAADVQQAQKGPLTTP+K T+AKLTDAGLKPAAQAVVIEALH RRVHPRTM ++GR+ T+EWPEGAKP WAV NH+ALSEGE+QAPLVATGRLQCAT+GD+GGGGAG GVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALV+QFKQGVHQASRIGSSAGLAVANPAVVR PTSRDTGKRKRAS +GGAVVGAARR YNQ+Y
Sbjct: 149 STDNSTKSRRSDSQRTGCNCKINIRWPIKTDVHQHPRLTTMDLEHLHTVDKEAADVQQAQKGPLTTPMKETAAKLTDAGLKPAAQAVVIEALHGRRVHPRTMSGQRGRRATTEWPEGAKPKWAVTKNHEALSEGEQQAPLVATGRLQCATDGDKGGGGAGGGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVQQFKQGVHQASRIGSSAGLAVANPAVVRPPTSRDTGKRKRASRKGGAVVGAARRTYNQTY 428
BLAST of mRNA_Ecto-sp13_S_contig5648.15994.1 vs. uniprot
Match: A0A6H5JJG6_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG6_9PHAE) HSP 1 Score: 379 bits (973), Expect = 1.950e-122 Identity = 276/697 (39.60%), Postives = 278/697 (39.89%), Query Frame = 1
Query: 10 NNTKSRKSDSQRTGCGCKINIRWPMKTDVYKHPRLTTMELEHLHAVDKEAADVQQAQKGPLTTPVKATSAKLTDAGLKPAAQAVVIEALHDRRVHPRTMQN-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EQGRKPTSEWPEGAKPTWAVALNHKALSEGEKQAPLVATGRLQCATEGDEGGGGAGAGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS 843
NNTKSRKSDSQRTGCGCKINIRWP+KTDVYKHPRLTTMELEHLHAVDKEAADVQQAQKGPLTTP+KATSAKLTDAGLKPAAQAVVIEALHDRRVHPRTMQN EQGRKPTSEWPEGAKPTWAVALNHKALSEGEKQAPLVATGRLQCATEGDEGGGGAGAGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS
Sbjct: 178 NNTKSRKSDSQRTGCGCKINIRWPIKTDVYKHPRLTTMELEHLHAVDKEAADVQQAQKGPLTTPMKATSAKLTDAGLKPAAQAVVIEALHDRRVHPRTMQNDDDIVRTHTRSTLKTCCRRRRVQACTKDGGVYKVKLDENGRLSHLFWMTAEQIALASRYGSVLLYDDTAVKNRYRLPLGLGVVIDGEYFSRIVFQSLTVDTTAVTFEWVLEEFKAARGAAPDMFLQDADAAMGLAADKVFPDARKRRCMWHLGQNLMKNLKKVLGSAFQAFLDQFYKTRGRLTESGFEEEYAKLVETFPKAKEYMAYLYKDRERWAVYSSVLVFSAASYTTNRVESMNAQAKRVLNSQASLVRVFKFLSDAIEKQAARAELRSAQLRLPSVSTPDTATYWFGAALTTPCKFALGVWAYKFMMDEVAMCATFCSSPSNALLEGASRDDALGKFEYIGMMVVNVETVAVIVENHDGTDKRYIVLGMTDGSHLCSCRTLQELGLCCRHFWAAMRLSRRYKFHVGILNQHWLAEQGRKPTSEWPEGAKPTWAVALNHKALSEGEKQAPLVATGRLQCATEGDEGGGGAGAGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS 874
BLAST of mRNA_Ecto-sp13_S_contig5648.15994.1 vs. uniprot
Match: A0A6H5JMX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX3_9PHAE) HSP 1 Score: 262 bits (670), Expect = 8.410e-85 Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 1
Query: 433 RLQCATEGDEGGGGAGAGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQ-GVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS 843
RLQCATEGDEGGGGAGAGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQ GVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS
Sbjct: 92 RLQCATEGDEGGGGAGAGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQXGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS 229
BLAST of mRNA_Ecto-sp13_S_contig5648.15994.1 vs. uniprot
Match: A0A6H5JCK5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK5_9PHAE) HSP 1 Score: 247 bits (630), Expect = 3.420e-80 Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1
Query: 463 GGGGAGAGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS 843
GGGGAGAGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS
Sbjct: 3 GGGGAGAGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQSYS 129
BLAST of mRNA_Ecto-sp13_S_contig5648.15994.1 vs. uniprot
Match: A0A6H5JSD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSD4_9PHAE) HSP 1 Score: 203 bits (517), Expect = 6.920e-63 Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = -1
Query: 541 STVALVVRPSSRSNHSTPLVRRPFSFAGVSARRQADDSWICHRQSCGRSYPRRLVHSLLKLPH*CPQGFGRHSLYPQAYSCCCLLEAVYVEKSAVLRGGPGL 846
STVALVVRPSSRSNHSTPLVRRPFSFAGVSARRQADDSW+CHRQSCGRSYPRRLV S+LKLPH CPQGFGRHSLYPQAYSCC LLEAVYVEKSAVLRGGPGL
Sbjct: 13 STVALVVRPSSRSNHSTPLVRRPFSFAGVSARRQADDSWVCHRQSCGRSYPRRLVQSVLKLPHECPQGFGRHSLYPQAYSCCYLLEAVYVEKSAVLRGGPGL 114
BLAST of mRNA_Ecto-sp13_S_contig5648.15994.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE) HSP 1 Score: 100 bits (248), Expect = 6.410e-20 Identity = 65/170 (38.24%), Postives = 89/170 (52.35%), Query Frame = 1
Query: 256 AVVIEALHDRRVHPRTMQNEQGRKPTSEWPEGAKPTWAVALNHKALSEGEKQAPLVATGRLQCATEGDEGGGGAGAGVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSR 759
AVV+E+ D RV R EQG + WP KP W VAL H S+ ++ P G W A + TIE+ L ++ +TG + QDRR LYV+ LK+ATAAVS GV+ VPP+ +RA+V+ F+ ++ A+ I S G + NP VR P R
Sbjct: 404 AVVMES-RDGRVM-RHWLTEQGLRELEAWPPECKPQWMVALVHSDASKDDQVRPPTVV-----------------VGDTWQAIPEDATIETRLQRVAQTGQSCQDRRLLYVEMLKKATAAVSSGVQLVPPDTMRAIVQTFESSMNAAAMISSGQGAVLGNPQAVRQPAVR 554
BLAST of mRNA_Ecto-sp13_S_contig5648.15994.1 vs. uniprot
Match: A0A6H5JU34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU34_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 3.070e-13 Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 1
Query: 514 IESSLVQLKETGPTP-----QDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVHQASRIGSSAGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRA 825
++ ++Q TG P QDRR LYVD +K AAVS GVE VPP+ LRA+V F+ ++ A+RI S G+ + NP VR P R G R ++S E G A RRA
Sbjct: 315 VQGKMIQAL-TGERPNARAIQDRRLLYVDMVKRTNAAVSAGVELVPPDTLRAIVETFESSLNAAARISSGQGVVLGNPQAVRQPAKRSQGARAKSSLEYGGAR-ARRRA 421
BLAST of mRNA_Ecto-sp13_S_contig5648.15994.1 vs. uniprot
Match: A0A6H5JUZ2_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ2_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 1.240e-11 Identity = 59/180 (32.78%), Postives = 91/180 (50.56%), Query Frame = 1
Query: 328 PTSEWPEGAKPTWAVALNHKALSEGEKQAPLVATGRLQCATEGDEGGGGAGAGVQWDA---GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVH-QASRIGSS------AGLAVANPAVVRLPTSRDTGKRKRASHEGGAVVGAARRAYNQS 837
P +WP+ A+P W V+ +++ A G + A EG G G G +W + + T+++ L+ LKE GPT QDR+ LY D K+ A S+ + P ALV QF V+ QA +G++ A L +ANP +RLP +R + KR+ + E G+ R A ++S
Sbjct: 656 PQQDWPDVARPRWVVSXSNRH-----------AAGEVDGAAGEGEGEGVGGCGGRWKSFVGSSQTVQTVLLDLKEKGPTYQDRKVLYADVTKKLGQAASILSDRFSPTVAVALVDQFLTMVNMQAGGVGTTTTGGRGAALFMANPGTLRLP-ARTSNKRRPGAVERYTRGGSKRAATSES 823
BLAST of mRNA_Ecto-sp13_S_contig5648.15994.1 vs. uniprot
Match: A0A6H5KUA5_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA5_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 1.060e-6 Identity = 40/108 (37.04%), Postives = 55/108 (50.93%), Query Frame = 1
Query: 472 GAGAGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQGVH-QASRI------GSSAGLAVANPAVVRLPTSRDTGKR 774
GAG + + T+++ L+ LKE GPT QDR+ LY D K+ A S+ + P ALV QF V+ QA R+ G A L +ANP +RLP +R
Sbjct: 424 GAGRWKSFVGSSQTVQTVLLDLKEKGPTDQDRQVLYADVTKKLGQAASILSDRFSPTVAVALVDQFMTMVNMQAGRVRTTTTGGRGAALFMANPGTLRLPARTSNERR 531
BLAST of mRNA_Ecto-sp13_S_contig5648.15994.1 vs. uniprot
Match: A0A6H5LLP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLP6_9PHAE) HSP 1 Score: 51.6 bits (122), Expect = 7.070e-5 Identity = 32/87 (36.78%), Postives = 44/87 (50.57%), Query Frame = 1
Query: 511 TIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQ-------GVHQASRIGSSAGLAVANPAVVRLP 750
T+++ L+ LKE GPT QDR+ L+ D K+ A + + P ALV QF GV + G A L +ANP +RLP
Sbjct: 5 TVQTVLLDLKEKGPTDQDRQVLHADVTKKLGQAARILSDRFSPTVAVALVDQFLTMVNVQTGGVGTTTTGGRGAALFMANPGTLRLP 91 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5648.15994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5648.15994.1 >prot_Ecto-sp13_S_contig5648.15994.1 ID=prot_Ecto-sp13_S_contig5648.15994.1|Name=mRNA_Ecto-sp13_S_contig5648.15994.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=282bp AVDNNTKSRKSDSQRTGCGCKINIRWPMKTDVYKHPRLTTMELEHLHAVDback to top mRNA from alignment at Ecto-sp13_S_contig5648:4530..8643- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5648.15994.1 ID=mRNA_Ecto-sp13_S_contig5648.15994.1|Name=mRNA_Ecto-sp13_S_contig5648.15994.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5648:4530..8643- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5648:4530..8643- >mRNA_Ecto-sp13_S_contig5648.15994.1 ID=mRNA_Ecto-sp13_S_contig5648.15994.1|Name=mRNA_Ecto-sp13_S_contig5648.15994.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=846bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5648:4530..8643- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |