mRNA_Ecto-sp13_S_contig56457.15993.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56457.15993.1
Unique NamemRNA_Ecto-sp13_S_contig56457.15993.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig56457.15993.1 vs. uniprot
Match: A0A6H5K734_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K734_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 6.910e-69
Identity = 102/108 (94.44%), Postives = 103/108 (95.37%), Query Frame = 1
Query:   43 VVGMDGGHLKGEWNGMMLTLTGKDANNENIHVATVIGPKEDTSLYKTLPRNCKKNPKMRDLLEQSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNLEEKIGSV 366
            VVGMDGGHLKGEWNGMMLTLT KDANNE IHVATVIGPKEDTSLYKTL RNCKKNPKMRDLLE SKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILN EEKIGS+
Sbjct:    9 VVGMDGGHLKGEWNGMMLTLTCKDANNEMIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNSEEKIGSM 116          
BLAST of mRNA_Ecto-sp13_S_contig56457.15993.1 vs. uniprot
Match: A0A6H5LCT1_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCT1_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 9.190e-66
Identity = 104/112 (92.86%), Postives = 106/112 (94.64%), Query Frame = 1
Query:   40 QVVGMDGGHLKGEWNGMMLTLTGKDANNENIHVATVIGPKEDTSLYKTLPRNCKKNPKMRDLLEQSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNLEEKIGSVSKS 375
            +VVGMDGGHLKGEWNGMMLTLT KDANNENIHVATVIGPKEDTSLYKTL RNCKKN KMRDLLE SKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNLEEKIGS + S
Sbjct:  192 KVVGMDGGHLKGEWNGMMLTLTCKDANNENIHVATVIGPKEDTSLYKTLLRNCKKNLKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNLEEKIGSNANS 303          
BLAST of mRNA_Ecto-sp13_S_contig56457.15993.1 vs. uniprot
Match: A0A6H5JW23_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW23_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 3.700e-62
Identity = 98/116 (84.48%), Postives = 104/116 (89.66%), Query Frame = 1
Query:   28 RKRPQVVGMDGGHLKGEWNGMMLTLTGKDANNENIHVATVIGPKEDTSLYKTLPRNCKKNPKMRDLLEQSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNLEEKIGSVSKS 375
            R   QVVGMDGG+LKGEWN MMLTL  KDANN+NIHVAT+IGPKEDTSLYKTL  NCKKNPKMRDLLE SKTTFFT QHKGATCALRGEAPLAQ+RYCLRHLILNL+EKIGS + S
Sbjct:  168 RSPMQVVGMDGGYLKGEWNAMMLTLACKDANNKNIHVATMIGPKEDTSLYKTLLLNCKKNPKMRDLLEDSKTTFFTGQHKGATCALRGEAPLAQNRYCLRHLILNLKEKIGSNANS 283          
BLAST of mRNA_Ecto-sp13_S_contig56457.15993.1 vs. uniprot
Match: A0A6H5K043_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K043_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 3.950e-62
Identity = 98/111 (88.29%), Postives = 103/111 (92.79%), Query Frame = 1
Query:   43 VVGMDGGHLKGEWNGMMLTLTGKDANNENIHVATVIGPKEDTSLYKTLPRNCKKNPKMRDLLEQSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNLEEKIGSVSKS 375
            VVGMDGGHLKGEWNG+MLTLT KDANNEN HVATVIGPKEDTSL+KTL RN K NPKMRDLLE SKTTFFTDQHKGATCALRGEAPLAQHRYCLRHL+LNLEE+IGS + S
Sbjct:   10 VVGMDGGHLKGEWNGVMLTLTCKDANNENSHVATVIGPKEDTSLHKTLLRNWK-NPKMRDLLEDSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLLLNLEEEIGSNANS 119          
BLAST of mRNA_Ecto-sp13_S_contig56457.15993.1 vs. uniprot
Match: A0A6H5JAG6_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAG6_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 1.320e-61
Identity = 99/118 (83.90%), Postives = 105/118 (88.98%), Query Frame = 1
Query:   28 RKRPQVVGMDGGHLKGEWNGMMLTLTGKDANNENIHVATVIGPKEDTSLYKTLPRNCKKNPKMRDLLEQSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNLEEKIGSVSKSMM 381
            R   +VVG DGGHLKGEWNGM+LTLT KDANNE IHVATVIGPKEDTSLYKTL RNCKKNPKMRDLLE SKT FFTDQHKGATCALRGEAPLAQHRYCLRH+ILN+E KIGSV   ++
Sbjct:  165 RSPMKVVGKDGGHLKGEWNGMVLTLTCKDANNEMIHVATVIGPKEDTSLYKTLLRNCKKNPKMRDLLEDSKTIFFTDQHKGATCALRGEAPLAQHRYCLRHIILNIE-KIGSVQAPLL 281          
BLAST of mRNA_Ecto-sp13_S_contig56457.15993.1 vs. uniprot
Match: A0A6H5L490_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L490_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 2.900e-61
Identity = 100/112 (89.29%), Postives = 103/112 (91.96%), Query Frame = 1
Query:   28 RKRPQVVGMDGGHLKGEWNGMMLTLTGKDANNENIHVATVIGPKEDTSLYKTLPRNCKKNPKMRDLLEQSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNLEEKIGS 363
            R   +VVGMDGGHLKGEWNGMMLTLT KDANNENIHVA VIGPKEDTSLY TL RNCKKNPKMRDLLE SKTTFFTDQHK ATCALRGEAPLAQHR+CLRHLILN+EEKIGS
Sbjct:  191 RSPMKVVGMDGGHLKGEWNGMMLTLTCKDANNENIHVAAVIGPKEDTSLYNTLLRNCKKNPKMRDLLEDSKTTFFTDQHKEATCALRGEAPLAQHRHCLRHLILNIEEKIGS 302          
BLAST of mRNA_Ecto-sp13_S_contig56457.15993.1 vs. uniprot
Match: A0A6H5JUM0_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUM0_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 6.800e-61
Identity = 101/116 (87.07%), Postives = 105/116 (90.52%), Query Frame = 1
Query:   28 RKRPQVVGMDGGHLKGEWNGMMLTLTGKDANNENIHVATVIGPKEDTSLYKTLPRNCKKNPKMRDLLEQSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNLEEKIGSVSKS 375
            R   +VVGMDGGHLKGEWNGMMLTLT KDA+NE I+VATVIGPKEDTSLYKTL RNCK NPKMRDLLE SKTTFFTDQHKGATCALR EAPLAQHRYCLRHLILNLEEKIGS + S
Sbjct:  230 RSPVKVVGMDGGHLKGEWNGMMLTLTCKDAHNEMINVATVIGPKEDTSLYKTLLRNCK-NPKMRDLLEDSKTTFFTDQHKGATCALRREAPLAQHRYCLRHLILNLEEKIGSNANS 344          
BLAST of mRNA_Ecto-sp13_S_contig56457.15993.1 vs. uniprot
Match: A0A6H5KMN6_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN6_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 2.450e-47
Identity = 76/94 (80.85%), Postives = 80/94 (85.11%), Query Frame = 1
Query:   40 QVVGMDGGHLKGEWNGMMLTLTGKDANNENIHVATVIGPKEDTSLYKTLPRNCKKNPKMRDLLEQSKTTFFTDQHKGATCALRGEAPLAQHRYC 321
            +VVGMDG HLKG+WNG MLTLT KDANNENIHVAT IGP E+T LYKTL R CKKNPKMRD LE SKTTF+TDQHKG  CAL GEAPLAQHR C
Sbjct:  192 KVVGMDGAHLKGKWNGQMLTLTCKDANNENIHVATAIGPVENTDLYKTLIRGCKKNPKMRDFLEDSKTTFYTDQHKGGKCALEGEAPLAQHRNC 285          
BLAST of mRNA_Ecto-sp13_S_contig56457.15993.1 vs. uniprot
Match: A0A6H5K5N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N8_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 5.280e-34
Identity = 61/78 (78.21%), Postives = 64/78 (82.05%), Query Frame = 1
Query:   52 MDGGHLKGEWNGMMLTLTGKDANNENIHVATVIGPKEDTSLYKTLPRNCKKNPKMRDLLEQSKTTFFTDQHKGATCAL 285
            MDG HLKG+WNG MLTLT KDANNENIHVAT IGP E+T LYKTL R CKKNPKMRD LE SKTTF+TDQHKG    L
Sbjct:    1 MDGAHLKGKWNGQMLTLTCKDANNENIHVATAIGPVENTDLYKTLIRGCKKNPKMRDFLEDSKTTFYTDQHKGGKXKL 78          
BLAST of mRNA_Ecto-sp13_S_contig56457.15993.1 vs. uniprot
Match: A0A6H5K832_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K832_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.030e-15
Identity = 51/136 (37.50%), Postives = 63/136 (46.32%), Query Frame = 1
Query:   40 QVVGMDGGHLKGEWNGMMLTLTGKDANNE-----------------------------NIHVATVIGPKEDTSLYKTLPRNCKKNPKMRDLLEQSKTTFFTDQHKGATCALRGEAPLAQHRYCLRHLILNLEEKIG 360
            QV+ +D GHLKG+WNGMML  T KDA+ +                              +HVAT I  KE+T  Y       K N  M ++L   KTT FTD+HK    A+   AP    R+CLRH I  L E  G
Sbjct:   64 QVLCVDAGHLKGDWNGMMLVATSKDADTKLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHVATSICDKENTDNYSWFYLMMKNNVDMAEVLNSPKTTLFTDKHKSHEPAITLHAPNTVWRWCLRHHIKALPEAPG 199          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56457.15993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K734_9PHAE6.910e-6994.44MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5LCT1_9PHAE9.190e-6692.86MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JW23_9PHAE3.700e-6284.48MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K043_9PHAE3.950e-6288.29MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JAG6_9PHAE1.320e-6183.90MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L490_9PHAE2.900e-6189.29MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JUM0_9PHAE6.800e-6187.07MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KMN6_9PHAE2.450e-4780.85MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5K5N8_9PHAE5.280e-3478.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K832_9PHAE2.030e-1537.50MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56457contigEcto-sp13_S_contig56457:420..806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop1
Start0
Seed ortholog score63.9
Seed ortholog evalue6.2e-08
Seed eggNOG ortholog28532.XP_010529033.1
Model size387
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2CN5X@1,2QU1T@2759,37T40@33090,3GGBN@35493,3HVMH@3699
Cds size387
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463782.2929316-CDS-Ecto-sp13_S_contig56457:419..8061681463782.2929316-CDS-Ecto-sp13_S_contig56457:419..806Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56457 420..806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56457.15993.1prot_Ecto-sp13_S_contig56457.15993.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56457 420..806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56457.15993.1

>prot_Ecto-sp13_S_contig56457.15993.1 ID=prot_Ecto-sp13_S_contig56457.15993.1|Name=mRNA_Ecto-sp13_S_contig56457.15993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
NPFPPSLLYRKRPQVVGMDGGHLKGEWNGMMLTLTGKDANNENIHVATVI
GPKEDTSLYKTLPRNCKKNPKMRDLLEQSKTTFFTDQHKGATCALRGEAP
LAQHRYCLRHLILNLEEKIGSVSKSMML*
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mRNA from alignment at Ecto-sp13_S_contig56457:420..806-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56457.15993.1 ID=mRNA_Ecto-sp13_S_contig56457.15993.1|Name=mRNA_Ecto-sp13_S_contig56457.15993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56457:420..806- (Ectocarpus species13 EcNAP12_S_4_19m)
AACCCTTTCCCTCCCTCTTTGCTCTATAGAAAACGTCCTCAGGTCGTGGG GATGGATGGGGGACACCTCAAAGGAGAGTGGAACGGGATGATGCTGACGC TGACGGGCAAGGACGCCAACAACGAGAACATCCACGTCGCGACGGTAATC GGACCCAAGGAGGACACCTCCCTCTACAAGACTTTGCCGCGCAACTGCAA GAAAAACCCGAAGATGAGGGACCTGCTGGAACAGTCGAAGACAACCTTCT TCACGGACCAGCACAAGGGGGCGACCTGTGCGCTGCGGGGCGAGGCCCCG CTGGCGCAGCACCGGTACTGCTTGAGGCACCTCATCCTAAACTTGGAGGA GAAGATCGGCAGCGTGAGTAAAAGTATGATGTTATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56457:420..806-

>mRNA_Ecto-sp13_S_contig56457.15993.1 ID=mRNA_Ecto-sp13_S_contig56457.15993.1|Name=mRNA_Ecto-sp13_S_contig56457.15993.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56457:420..806- (Ectocarpus species13 EcNAP12_S_4_19m)
AACCCTTTCCCTCCCTCTTTGCTCTATAGAAAACGTCCTCAGGTCGTGGG
GATGGATGGGGGACACCTCAAAGGAGAGTGGAACGGGATGATGCTGACGC
TGACGGGCAAGGACGCCAACAACGAGAACATCCACGTCGCGACGGTAATC
GGACCCAAGGAGGACACCTCCCTCTACAAGACTTTGCCGCGCAACTGCAA
GAAAAACCCGAAGATGAGGGACCTGCTGGAACAGTCGAAGACAACCTTCT
TCACGGACCAGCACAAGGGGGCGACCTGTGCGCTGCGGGGCGAGGCCCCG
CTGGCGCAGCACCGGTACTGCTTGAGGCACCTCATCCTAAACTTGGAGGA
GAAGATCGGCAGCGTGAGTAAAAGTATGATGTTATAA
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