mRNA_Ecto-sp13_S_contig56443.15990.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56443.15990.1
Unique NamemRNA_Ecto-sp13_S_contig56443.15990.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig56443.15990.1 vs. uniprot
Match: D8LQI7_ECTSI (BIG1, ArfGEF protein of the BIG/GBF family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQI7_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 1.740e-60
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 
Query:    1 EPRAVATFLLENCDKLDKTQIGEYLGKEIHYKDGFCVQVLHEYVDMMDFKGMRFDDAIRHYLSGFRLPGEAQKIDRMMEKFSERFCLQNPTVFPSADT 294
            EPRAVATFLLENCDKLDKTQIGEYLGKEIHYKDGFCVQVLHEYVDMMDFKGMRFDDAIRHYLSGFRLPGEAQKIDRMMEKFSERFCLQNPTVFPSADT
Sbjct:  701 EPRAVATFLLENCDKLDKTQIGEYLGKEIHYKDGFCVQVLHEYVDMMDFKGMRFDDAIRHYLSGFRLPGEAQKIDRMMEKFSERFCLQNPTVFPSADT 798
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BLAST of mRNA_Ecto-sp13_S_contig56443.15990.1 vs. uniprot
Match: F0XZH6_AURAN (SEC7 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZH6_AURAN)

HSP 1 Score: 145 bits (367), Expect = 1.860e-42
Identity = 67/97 (69.07%), Postives = 80/97 (82.47%), Query Frame = 1 
Query:    1 EPRAVATFLLENCDKLDKTQIGEYLGKEIHYKDGFCVQVLHEYVDMMDFKGMRFDDAIRHYLSGFRLPGEAQKIDRMMEKFSERFCLQNPTVFPSAD 291
            +P++VA FL  +   LDKT +G+YLGKE  Y+DGFCV+VLHEYVD MDF G+ FD AIRH+LSGFRLPGEAQKIDRMMEK++ER+C  N  VFPSAD
Sbjct:   22 DPKSVAAFLHAHAAALDKTVVGDYLGKEEAYQDGFCVKVLHEYVDAMDFTGLEFDVAIRHFLSGFRLPGEAQKIDRMMEKYAERYCALNKAVFPSAD 118
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BLAST of mRNA_Ecto-sp13_S_contig56443.15990.1 vs. uniprot
Match: A0A7S2FJ16_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FJ16_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.840e-42
Identity = 67/98 (68.37%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:    1 EPRAVATFLLENCDKLDKTQIGEYLGKEIHYKDGFCVQVLHEYVDMMDFKGMRFDDAIRHYLSGFRLPGEAQKIDRMMEKFSERFCLQNPTVFPSADT 294
            +P+ VA FL  N D  DKTQ+GE LGKE  Y  G   +VLHEYVD +DF G+ FD+ IRH+LSGFRLPGEAQKIDRMMEKFSER+CLQNP +FPS DT
Sbjct:   38 DPKEVALFLKANKDSFDKTQVGELLGKEKDYAGGVYFKVLHEYVDALDFSGLEFDEGIRHFLSGFRLPGEAQKIDRMMEKFSERYCLQNPDLFPSPDT 135
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BLAST of mRNA_Ecto-sp13_S_contig56443.15990.1 vs. uniprot
Match: A0A6G0X305_9STRA (SEC7 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X305_9STRA)

HSP 1 Score: 155 bits (392), Expect = 6.890e-42
Identity = 69/97 (71.13%), Postives = 85/97 (87.63%), Query Frame = 1 
Query:    4 PRAVATFLLENCDKLDKTQIGEYLGKEIHYKDGFCVQVLHEYVDMMDFKGMRFDDAIRHYLSGFRLPGEAQKIDRMMEKFSERFCLQNPTVFPSADT 294
            PR VA F+ E   +LDKT +G+YLGKE+ Y++GFC++VLHE+VDMMDF GM+ D+AIRH+LSGFRLPGE+QKIDRMMEKF+ER+C QNP VFPSADT
Sbjct:  592 PRDVAKFIHEQNARLDKTMVGDYLGKEVQYQNGFCLKVLHEFVDMMDFTGMQVDEAIRHFLSGFRLPGESQKIDRMMEKFAERYCFQNPGVFPSADT 688
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BLAST of mRNA_Ecto-sp13_S_contig56443.15990.1 vs. uniprot
Match: A0A397D1Q6_9STRA (SEC7 domain-containing protein (Fragment) n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D1Q6_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.060e-41
Identity = 65/97 (67.01%), Postives = 86/97 (88.66%), Query Frame = 1 
Query:    4 PRAVATFLLENCDKLDKTQIGEYLGKEIHYKDGFCVQVLHEYVDMMDFKGMRFDDAIRHYLSGFRLPGEAQKIDRMMEKFSERFCLQNPTVFPSADT 294
            PR VA FL +  ++LDKT +G+YLGKE+ Y++GFC++VLHE+VDMMD+ G++ D+AIRH+L+GFRLPGE+QKIDRMMEKF+ER+C QNP +FPSADT
Sbjct:  308 PRHVAKFLHDQSNRLDKTMVGDYLGKEVQYQNGFCLKVLHEFVDMMDYTGLQVDEAIRHFLAGFRLPGESQKIDRMMEKFAERYCFQNPGIFPSADT 404
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BLAST of mRNA_Ecto-sp13_S_contig56443.15990.1 vs. uniprot
Match: A0A024TEP8_9STRA (SEC7 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TEP8_9STRA)

HSP 1 Score: 153 bits (387), Expect = 3.260e-41
Identity = 66/97 (68.04%), Postives = 86/97 (88.66%), Query Frame = 1 
Query:    4 PRAVATFLLENCDKLDKTQIGEYLGKEIHYKDGFCVQVLHEYVDMMDFKGMRFDDAIRHYLSGFRLPGEAQKIDRMMEKFSERFCLQNPTVFPSADT 294
            PR VA FL E  ++LDKT +G+YLGKE+ Y++GFC++VLHE+VDMMD+ G++ D+AIRH+L+GFRLPGE+QKIDRMMEKF+ER+C QNP +FPSADT
Sbjct:  632 PRDVAKFLHEQSNRLDKTMVGDYLGKEVQYQNGFCLKVLHEFVDMMDYMGLQVDEAIRHFLTGFRLPGESQKIDRMMEKFAERYCSQNPGIFPSADT 728
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BLAST of mRNA_Ecto-sp13_S_contig56443.15990.1 vs. uniprot
Match: A0A4D9CUH3_9STRA (SEC7 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CUH3_9STRA)

HSP 1 Score: 153 bits (387), Expect = 3.260e-41
Identity = 71/97 (73.20%), Postives = 82/97 (84.54%), Query Frame = 1 
Query:    4 PRAVATFLLENCDKLDKTQIGEYLGKEIHYKDGFCVQVLHEYVDMMDFKGMRFDDAIRHYLSGFRLPGEAQKIDRMMEKFSERFCLQNPTVFPSADT 294
            P  VA FL ++ D+LDKT IG+YLGKE  Y   FCV+VLHEYVDMMD +G+ FD AIRH+L+GFRLPGEAQKIDR+MEKF+ERFCLQNP VFPSADT
Sbjct:  689 PAEVARFLHDHKDRLDKTVIGDYLGKEKDYDSAFCVKVLHEYVDMMDLQGLEFDQAIRHFLAGFRLPGEAQKIDRIMEKFAERFCLQNPAVFPSADT 785
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BLAST of mRNA_Ecto-sp13_S_contig56443.15990.1 vs. uniprot
Match: W4FLG7_9STRA (SEC7 domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FLG7_9STRA)

HSP 1 Score: 153 bits (386), Expect = 4.440e-41
Identity = 65/97 (67.01%), Postives = 86/97 (88.66%), Query Frame = 1 
Query:    4 PRAVATFLLENCDKLDKTQIGEYLGKEIHYKDGFCVQVLHEYVDMMDFKGMRFDDAIRHYLSGFRLPGEAQKIDRMMEKFSERFCLQNPTVFPSADT 294
            PR VA FL +  ++LDKT +G+YLGKE+ Y++GFC++VLHE+VDMMD+ G++ D+AIRH+L+GFRLPGE+QKIDRMMEKF+ER+C QNP +FPSADT
Sbjct:  630 PRHVAKFLHDQSNRLDKTMVGDYLGKEVQYQNGFCLKVLHEFVDMMDYTGLQVDEAIRHFLAGFRLPGESQKIDRMMEKFAERYCFQNPGIFPSADT 726
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BLAST of mRNA_Ecto-sp13_S_contig56443.15990.1 vs. uniprot
Match: A0A7S2AZQ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AZQ1_9STRA)

HSP 1 Score: 138 bits (347), Expect = 5.440e-40
Identity = 65/97 (67.01%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:    4 PRAVATFLLENCDKLDKTQIGEYLGKEIHYKDGFCVQVLHEYVDMMDFKGMRFDDAIRHYLSGFRLPGEAQKIDRMMEKFSERFCLQNPTVFPSADT 294
            PR VA +L E  D+LDKT +GE LGKE  YKDGF   ++HEY+DMM F+G   D+AIRH LSGFRLPGEAQKIDRMMEKF+ERFC++N  +F SADT
Sbjct:    3 PRDVAAWLHEARDELDKTLVGEMLGKEKEYKDGFWFTIMHEYIDMMAFQGFDLDEAIRHLLSGFRLPGEAQKIDRMMEKFAERFCIENKNLFASADT 99
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BLAST of mRNA_Ecto-sp13_S_contig56443.15990.1 vs. uniprot
Match: A0A485LS78_9STRA (Aste57867_25067 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LS78_9STRA)

HSP 1 Score: 148 bits (373), Expect = 2.510e-39
Identity = 64/97 (65.98%), Postives = 83/97 (85.57%), Query Frame = 1 
Query:    4 PRAVATFLLENCDKLDKTQIGEYLGKEIHYKDGFCVQVLHEYVDMMDFKGMRFDDAIRHYLSGFRLPGEAQKIDRMMEKFSERFCLQNPTVFPSADT 294
            PR VA F+ E   +LDKT +G+YLGKE+ Y++GFC++VLHE+VDMMD+ G+  D+AIRH+L+GFRLPGE+QKIDRMMEKF+ER+C  NP +FPSADT
Sbjct:  618 PRDVARFIHEQNLRLDKTMVGDYLGKEVQYQNGFCLKVLHEFVDMMDYSGLDVDEAIRHFLAGFRLPGESQKIDRMMEKFAERYCFHNPGIFPSADT 714
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56443.15990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQI7_ECTSI1.740e-60100.00BIG1, ArfGEF protein of the BIG/GBF family n=2 Tax... [more]
F0XZH6_AURAN1.860e-4269.07SEC7 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S2FJ16_9STRA2.840e-4268.37Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6G0X305_9STRA6.890e-4271.13SEC7 domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A397D1Q6_9STRA1.060e-4167.01SEC7 domain-containing protein (Fragment) n=5 Tax=... [more]
A0A024TEP8_9STRA3.260e-4168.04SEC7 domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A4D9CUH3_9STRA3.260e-4173.20SEC7 domain-containing protein n=2 Tax=Monodopsida... [more]
W4FLG7_9STRA4.440e-4167.01SEC7 domain-containing protein n=3 Tax=Aphanomyces... [more]
A0A7S2AZQ1_9STRA5.440e-4067.01Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A485LS78_9STRA2.510e-3965.98Aste57867_25067 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56443contigEcto-sp13_S_contig56443:2..896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score208.4
Seed ortholog evalue1.5e-51
Seed eggNOG ortholog2880.D8LQI7
Model size294
KEGG koko:K18442
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.regulation of ARF protein signal transduction
EggNOG OGsCOG5307@1,KOG0929@2759
Cds size294
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463782.16216-CDS-Ecto-sp13_S_contig56443:1..1811681463782.16216-CDS-Ecto-sp13_S_contig56443:1..181Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56443 2..181 -
1681463782.180603-CDS-Ecto-sp13_S_contig56443:782..8961681463782.180603-CDS-Ecto-sp13_S_contig56443:782..896Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56443 783..896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56443.15990.1prot_Ecto-sp13_S_contig56443.15990.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56443 2..896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56443.15990.1

>prot_Ecto-sp13_S_contig56443.15990.1 ID=prot_Ecto-sp13_S_contig56443.15990.1|Name=mRNA_Ecto-sp13_S_contig56443.15990.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
EPRAVATFLLENCDKLDKTQIGEYLGKEIHYKDGFCVQVLHEYVDMMDFK
GMRFDDAIRHYLSGFRLPGEAQKIDRMMEKFSERFCLQNPTVFPSADT
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mRNA from alignment at Ecto-sp13_S_contig56443:2..896-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56443.15990.1 ID=mRNA_Ecto-sp13_S_contig56443.15990.1|Name=mRNA_Ecto-sp13_S_contig56443.15990.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=895bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56443:2..896- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCCCCGCGCGGTGGCTACGTTCCTGCTTGAGAACTGCGACAAGCTTGA
CAAGACGCAGATCGGGGAGTATCTCGGCAAGGAGATACACTACAAGGACG
GCTTCTGCGTCCAGGTTTGTACATAAAGAGGCGCTGTGTAGCGCCGGTTT
TGTGTCCAGAGGTTTTACCGGCACTATGACGGACACCGGCACTGTTCAGA
GCGCAGAATGAGTTGGTGTTTCAGTGTATTCGAGCTGAAAGCACATACGG
GCACAATACCGCACTATACGGGCACCATTCGACCGGGGCTATACAGGGCC
CACAACTGTATCTGTCCTGTACTGCCCAAAACACCAAGAACAACAACAAA
ATTTCGATGAAGTACGGAGTGCGTTGTGTTGTCGTCTTCACATAAAGAGC
CATTCGGTTCTCTGACTTGCACGTATCTGTTCAAGTCCGTATTACTGATC
TGCCGCCTTCCTTCGTCACAGTTGGCTAGCGAATTAGGCTACTCAGTAGG
GTGCATATATGAAAAACAAGCACTGAAGAACAGGATCAGCATCTCAACAC
GCGATAGAGGGTAAGAAAACAGAAAATTTTGTCCGAGTAGTCAGACTTCG
CAGCAGGTCGACACGTCCGGCAAAAGAGATCGACAAACTTGTGGGTCAGG
CCATAAAACCCTTGCTGCCGTTGCTGCTACAAAAAATCCCTCAACAAAAC
TACATGGTACCCTAGGTGCTGCACGAGTACGTGGACATGATGGACTTCAA
GGGGATGCGTTTCGACGATGCGATCCGGCACTACCTGAGCGGCTTCCGCC
TGCCCGGGGAGGCTCAAAAGATCGACCGCATGATGGAGAAGTTCTCAGAG
AGGTTCTGTCTGCAGAACCCCACCGTATTCCCGTCGGCCGACACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56443:2..896-

>mRNA_Ecto-sp13_S_contig56443.15990.1 ID=mRNA_Ecto-sp13_S_contig56443.15990.1|Name=mRNA_Ecto-sp13_S_contig56443.15990.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56443:2..896- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCCCCGCGCGGTGGCTACGTTCCTGCTTGAGAACTGCGACAAGCTTGA
CAAGACGCAGATCGGGGAGTATCTCGGCAAGGAGATACACTACAAGGACG
GCTTCTGCGTCCAGGTGCTGCACGAGTACGTGGACATGATGGACTTCAAG
GGGATGCGTTTCGACGATGCGATCCGGCACTACCTGAGCGGCTTCCGCCT
GCCCGGGGAGGCTCAAAAGATCGACCGCATGATGGAGAAGTTCTCAGAGA
GGTTCTGTCTGCAGAACCCCACCGTATTCCCGTCGGCCGACACG
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