mRNA_Ecto-sp13_S_contig5643.15988.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5643.15988.1
Unique NamemRNA_Ecto-sp13_S_contig5643.15988.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5643.15988.1 vs. uniprot
Match: D8LJP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJP3_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.020e-10
Identity = 40/62 (64.52%), Postives = 40/62 (64.52%), Query Frame = 1 
Query: 1096 MEEDLLMRQPNAMSVASVAQGLPAPVLSPSPSSPPSXXXXSLGAPGPSLGIALHLKEARPVR 1281
            MEEDLLMRQPNAMSVASVAQ                    SLGA GPS GIALHLKEARPVR
Sbjct:    1 MEEDLLMRQPNAMSVASVAQS-------------------SLGALGPSRGIALHLKEARPVR 43
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BLAST of mRNA_Ecto-sp13_S_contig5643.15988.1 vs. uniprot
Match: A0A6H5JVT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT5_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 3.450e-8
Identity = 36/42 (85.71%), Postives = 37/42 (88.10%), Query Frame = -1 
Query:  882 VVSVVILLLLSPFVA*GMLLLRELVAKTSASAASRTSPPLLS 1007
            VVSVVI+LLLSPFVA GMLLL ELVAK S S ASRTSPPLLS
Sbjct:    3 VVSVVIVLLLSPFVASGMLLLGELVAKASVSGASRTSPPLLS 44
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5643.15988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJP3_ECTSI2.020e-1064.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVT5_9PHAE3.450e-885.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5643contigEcto-sp13_S_contig5643:442..3261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1781
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_002810.1
Cds size1692
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463782.0234761-UTR-Ecto-sp13_S_contig5643:441..5301681463782.0234761-UTR-Ecto-sp13_S_contig5643:441..530Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5643 442..530 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463782.0346227-CDS-Ecto-sp13_S_contig5643:530..8811681463782.0346227-CDS-Ecto-sp13_S_contig5643:530..881Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5643 531..881 -
1681463782.0455618-CDS-Ecto-sp13_S_contig5643:1725..19111681463782.0455618-CDS-Ecto-sp13_S_contig5643:1725..1911Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5643 1726..1911 -
1681463782.05615-CDS-Ecto-sp13_S_contig5643:2106..32611681463782.05615-CDS-Ecto-sp13_S_contig5643:2106..3261Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5643 2107..3261 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5643.15988.1prot_Ecto-sp13_S_contig5643.15988.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5643 531..3261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5643.15988.1

>prot_Ecto-sp13_S_contig5643.15988.1 ID=prot_Ecto-sp13_S_contig5643.15988.1|Name=mRNA_Ecto-sp13_S_contig5643.15988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=564bp
MEPQRKSPPRRSPRLAVLDRHPTAVSPTATAIPIAASSNKRSIEEVYGNG
SSGGAGGGNHSGDPAAMPEAKASSVTRSGKRSGQKDIDNNSGVRRQVAAA
ATAPGAKSSATRSSKRISHGPDEESNRVSGQHQATDVAATAAGFNAATAG
LRKTSAATSSIEDIDDDRDKDSGSGEHIVVAAQAVVKAPATRSPSAKISP
DVDEKSNAGSCCQEVLPPSRGGTSVAATFSQRSGSQVAVVAPAVASASAT
SSGERSSSPETDTGSEGGDHEQIVAAAPAALAPTRISCQDSREKDNNGGE
VLEAAEAEVLATSSRKSSIPHATKGESNSNITTDTTIVSCHMAILRQVQT
DLGEAVYRCEELLGNMEEDLLMRQPNAMSVASVAQGLPAPVLSPSPSSPP
SSPSSSLGAPGPSLGIALHLKEARPVREIEPRERIFSQSSRTSVFWSSPV
SRRQRTGEYRHGIDSPPVGCYASDGMITRAQQHQHRRGGVEGQQVVGYDA
YRKRWVPLSRRGLEQLALEQAKALRLCGGGGVGGSDHATATAAAAPGCYL
SKGSRFRNGLANL*
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mRNA from alignment at Ecto-sp13_S_contig5643:442..3261-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5643.15988.1 ID=mRNA_Ecto-sp13_S_contig5643.15988.1|Name=mRNA_Ecto-sp13_S_contig5643.15988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2820bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5643:442..3261- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCCACAGCGAAAATCCCCCCCGCGCCGATCGCCGAGGCTCGCCGT
GCTCGACCGACACCCAACAGCGGTATCACCAACAGCAACAGCAATACCCA
TTGCGGCGAGCTCGAACAAGAGGAGCATAGAAGAAGTCTATGGCAATGGC
AGCAGTGGTGGCGCTGGCGGTGGCAACCACAGCGGGGACCCGGCCGCTAT
GCCCGAAGCCAAGGCCTCCTCGGTGACAAGGTCAGGGAAGAGAAGCGGGC
AAAAAGACATCGACAACAACAGCGGCGTCCGTCGACAGGTTGCCGCAGCA
GCAACAGCACCAGGAGCCAAATCTTCGGCAACACGATCCAGCAAGAGGAT
CAGCCATGGGCCCGACGAAGAGAGCAACAGGGTCAGCGGCCAACATCAGG
CTACCGATGTAGCAGCAACGGCAGCAGGATTCAACGCCGCAACAGCAGGA
TTAAGAAAAACTTCGGCAGCAACAAGTTCGATCGAAGACATCGACGACGA
TCGCGACAAAGACAGCGGTAGCGGCGAACATATCGTCGTAGCAGCGCAAG
CAGTGGTCAAAGCCCCGGCGACAAGAAGCCCGAGCGCGAAAATCAGTCCA
GACGTAGACGAGAAGAGCAACGCTGGAAGCTGTTGCCAGGAGGTTCTTCC
GCCATCAAGAGGCGGTACCTCGGTGGCAGCAACCTTCAGTCAGAGAAGCG
GGTCACAGGTTGCTGTAGTAGCACCAGCTGTAGCCAGTGCCTCGGCTACG
AGCTCCGGTGAGAGAAGCAGCAGCCCGGAGACCGACACAGGCAGCGAGGG
CGGCGACCATGAACAGATTGTTGCAGCAGCACCAGCAGCGTTAGCCCCGA
CGAGAATCAGCTGCCAAGACTCCCGCGAGAAGGACAACAACGGCGGAGAG
GTTCTTGAAGCAGCAGAAGCCGAGGTCTTGGCGACAAGCTCGCGCAAAAG
CAGCATCCCTCATGCCACGAAAGGGGAAAGCAACAGTAATATCACGACCG
ACACAACCATCGTCAGCTGTCATATGGCGATCCTCCGACAGGTGCAAACG
GACCTTGGCGAGGCTGTGTACAGGTGTGAAGAGCTGCTGGGCAACATGGA
GGAGGACCTATTGATGCGGCAGCCCAACGCTATGAGCGTAGCCAGCGTTG
CCCAGGTACACACCCATAACCTCAAGGTGCTGTCCGTTCTGTAGTAGAGT
GTGATACATATCCCAAGAGTCGTCCGGTTCCACCACTCAACACCATTTGT
TGGTGGGTCTCTCCCCGCCGCCCCTCCCCCCCCTTGACGATGATCACGAC
TACCGCTTCCACTCCTTCCGAACGAAACCCGCTCTCAAACGTCCGCCCAG
GGGTTGCCCGCGCCAGTTTTGTCCCCGTCCCCGTCCTCCCCCCCCTCCTC
CCCTTCCTCCTCCCTGGGCGCACCCGGGCCTTCCCTCGGCATTGCGCTGC
ACCTGAAGGAGGCCAGGCCTGTGCGTGAGATCGAGCCGAGAGAGAGGATA
TTTTCGCAGAGCTCTCGGACTTCGGTCTTCTGGAGTGTGAGTGAGAAAAA
CCATGCTTAAGAGCAGGTGGCAGGAGGACAGCAGTGGGGGGGGGCTGGTA
TCGATTGGATGATGCCCGTGCCCGGAAGTGCTGTTCGATTCGGCTGGTAC
AGACTGAAGCACCAAGTTATTGGGCTCTTTAAATAGTACCGGTGTCCGGG
TCAATTCTCTGGGCACATGCCGGCAGTGAACAAGCCCCCCCGCTGTAGTT
GATTGTAGAATAGGCAGACAGGGGTAGGCGTTTCGCGGAGGCAGGTGCGT
TTGATGTCCGACTCGAGACGAGGGTGGCAGAGTGGCAAACAACGAAGAGG
GCATCCTGCCTCGTGCTTCTTGAGCGCTTCAAAGCGAGGTATCTCTTCAC
TATATGTCGCCCGCGGAGTGTTTTGCAGTTGCATGAGCCACCCTGCCGCC
TTGGCAGCGAGCAGGGCGTAAGGACACGCCCGCTAGTGGGAGCGGTTTAG
GCGTAAGGGGAAAGATATGAAGATCACCTTACCGGGGGCAGGGGGAAAGA
TGCTGCCGCTACCGAACAAGTGGTTCGAGGGAGACGTCGTTTTTCTCGAA
AAAGAAGTGCGATTTCGGCTATTAGGGGACGGGAAACTTTCGTGTGGGTT
TCTGGAAACGGGTGAGCTCGATAGCTTGCTCGCGCCTCGTGAGAGGAAAG
AGAATGACAATAGGGTTTCCTCGCCGCCATCGTACCTCGTTCGCCATCCA
TTGTCCCCTGCCAATGGATCAATTCGCTTCACATACCCTTCTGTTGCTCT
CCTCTCAGCCCGCCCCAAACGATCTACCCCGCCCCCCTTCTCCTCCTTCG
TCACGGGCCAATCAATCCAAACCTGTCCAGAGCCCAGTTTCACGCAGACA
ACGTACGGGGGAATATCGCCACGGTATTGACTCCCCACCAGTGGGCTGCT
ACGCCAGCGACGGGATGATAACGCGGGCCCAGCAGCATCAGCATCGGCGG
GGCGGTGTGGAGGGTCAACAGGTGGTGGGTTACGACGCCTACCGCAAAAG
GTGGGTGCCGCTGAGTCGAAGGGGGCTCGAGCAGCTAGCTCTAGAGCAGG
CCAAAGCCCTCCGTCTTTGTGGCGGTGGTGGTGTTGGTGGCAGTGATCAT
GCTACTGCTACCGCCGCCGCTGCTCCTGGCTGTTACCTCTCGAAGGGCTC
ACGCTTCAGAAATGGACTGGCTAACCTGTGACAGCGGTACGCAGGGCGGT
GTGACTGTAGTCCGTCGTTAGTAGCGGGGGGTGAGTGCGCGCGTCAAGAA
CGTTGGGGGGTTGTTTTCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5643:442..3261-

>mRNA_Ecto-sp13_S_contig5643.15988.1 ID=mRNA_Ecto-sp13_S_contig5643.15988.1|Name=mRNA_Ecto-sp13_S_contig5643.15988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1692bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5643:442..3261- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGCCACAGCGAAAATCCCCCCCGCGCCGATCGCCGAGGCTCGCCGT
GCTCGACCGACACCCAACAGCGGTATCACCAACAGCAACAGCAATACCCA
TTGCGGCGAGCTCGAACAAGAGGAGCATAGAAGAAGTCTATGGCAATGGC
AGCAGTGGTGGCGCTGGCGGTGGCAACCACAGCGGGGACCCGGCCGCTAT
GCCCGAAGCCAAGGCCTCCTCGGTGACAAGGTCAGGGAAGAGAAGCGGGC
AAAAAGACATCGACAACAACAGCGGCGTCCGTCGACAGGTTGCCGCAGCA
GCAACAGCACCAGGAGCCAAATCTTCGGCAACACGATCCAGCAAGAGGAT
CAGCCATGGGCCCGACGAAGAGAGCAACAGGGTCAGCGGCCAACATCAGG
CTACCGATGTAGCAGCAACGGCAGCAGGATTCAACGCCGCAACAGCAGGA
TTAAGAAAAACTTCGGCAGCAACAAGTTCGATCGAAGACATCGACGACGA
TCGCGACAAAGACAGCGGTAGCGGCGAACATATCGTCGTAGCAGCGCAAG
CAGTGGTCAAAGCCCCGGCGACAAGAAGCCCGAGCGCGAAAATCAGTCCA
GACGTAGACGAGAAGAGCAACGCTGGAAGCTGTTGCCAGGAGGTTCTTCC
GCCATCAAGAGGCGGTACCTCGGTGGCAGCAACCTTCAGTCAGAGAAGCG
GGTCACAGGTTGCTGTAGTAGCACCAGCTGTAGCCAGTGCCTCGGCTACG
AGCTCCGGTGAGAGAAGCAGCAGCCCGGAGACCGACACAGGCAGCGAGGG
CGGCGACCATGAACAGATTGTTGCAGCAGCACCAGCAGCGTTAGCCCCGA
CGAGAATCAGCTGCCAAGACTCCCGCGAGAAGGACAACAACGGCGGAGAG
GTTCTTGAAGCAGCAGAAGCCGAGGTCTTGGCGACAAGCTCGCGCAAAAG
CAGCATCCCTCATGCCACGAAAGGGGAAAGCAACAGTAATATCACGACCG
ACACAACCATCGTCAGCTGTCATATGGCGATCCTCCGACAGGTGCAAACG
GACCTTGGCGAGGCTGTGTACAGGTGTGAAGAGCTGCTGGGCAACATGGA
GGAGGACCTATTGATGCGGCAGCCCAACGCTATGAGCGTAGCCAGCGTTG
CCCAGGGGTTGCCCGCGCCAGTTTTGTCCCCGTCCCCGTCCTCCCCCCCC
TCCTCCCCTTCCTCCTCCCTGGGCGCACCCGGGCCTTCCCTCGGCATTGC
GCTGCACCTGAAGGAGGCCAGGCCTGTGCGTGAGATCGAGCCGAGAGAGA
GGATATTTTCGCAGAGCTCTCGGACTTCGGTCTTCTGGAGTAGCCCAGTT
TCACGCAGACAACGTACGGGGGAATATCGCCACGGTATTGACTCCCCACC
AGTGGGCTGCTACGCCAGCGACGGGATGATAACGCGGGCCCAGCAGCATC
AGCATCGGCGGGGCGGTGTGGAGGGTCAACAGGTGGTGGGTTACGACGCC
TACCGCAAAAGGTGGGTGCCGCTGAGTCGAAGGGGGCTCGAGCAGCTAGC
TCTAGAGCAGGCCAAAGCCCTCCGTCTTTGTGGCGGTGGTGGTGTTGGTG
GCAGTGATCATGCTACTGCTACCGCCGCCGCTGCTCCTGGCTGTTACCTC
TCGAAGGGCTCACGCTTCAGAAATGGACTGGCTAACCTGTGA
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