mRNA_Ecto-sp13_S_contig5642.15987.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5642.15987.1
Unique NamemRNA_Ecto-sp13_S_contig5642.15987.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5642.15987.1 vs. uniprot
Match: D7G542_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G542_ECTSI)

HSP 1 Score: 479 bits (1232), Expect = 3.690e-152
Identity = 252/262 (96.18%), Postives = 254/262 (96.95%), Query Frame = 2 
Query:   95 GALPAGVLAVGDLAEVMARSKPSVPGITAASGAGRGXXXRSGRGAGRDAHNPAKIARAGLGDGXXXXXXXSSSAGAAAGGGGAMFGWPRGAPRSALPLVVIDVPNVAMRHGLNKKFSCTGVQMAVEYFRTAGHRVLGFLPDYYLDLKRTNGLERAKKLGVADVKASRLPDDVQLLQRLVDDGLIVSTPPQDYDDSYCIKYAMARDGYVVTNDLYRDHVKGIEGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSFHQDGNG 880
            GALPAGVLAVGDLAEVMARSKPS+PG TAASGAGRG X RSGRGAGRDAHNPAKIARAG    XXXXXXXS SAGAAAGGGGAMFGWPRGAPRSALPLVVIDVPNVAMRHGLNKKFSCTGVQMAVEYFRTAGHRVLGFLPDYYLDLKRTNGLERAKKLGVADVKASRLPDDVQLLQRLVDDGLIVSTPPQDYDDSYCIKYAMARDGYVVTNDLYRDHVKGIEGRKKADAARRWIK+HSISYTFVGDEFFPNPDFSFHQDGNG
Sbjct: 1332 GALPAGVLAVGDLAEVMARSKPSLPGTTAASGAGRGGXGRSGRGAGRDAHNPAKIARAGXXXXXXXXXXXSPSAGAAAGGGGAMFGWPRGAPRSALPLVVIDVPNVAMRHGLNKKFSCTGVQMAVEYFRTAGHRVLGFLPDYYLDLKRTNGLERAKKLGVADVKASRLPDDVQLLQRLVDDGLIVSTPPQDYDDSYCIKYAMARDGYVVTNDLYRDHVKGIEGRKKADAARRWIKAHSISYTFVGDEFFPNPDFSFHQDGNG 1593
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BLAST of mRNA_Ecto-sp13_S_contig5642.15987.1 vs. uniprot
Match: A0A7S2CKB1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CKB1_9STRA)

HSP 1 Score: 208 bits (529), Expect = 5.960e-62
Identity = 91/162 (56.17%), Postives = 121/162 (74.69%), Query Frame = 2 
Query:  377 ALPLVVIDVPNVAMRHGLNKKFSCTGVQMAVEYFRTAGHRVLGFLPDYYLDLKRTNGLERAKKLGVADVKASRLPDDVQLLQRLVDDGLIVSTPPQDYDDSYCIKYAMARDGYVVTNDLYRDHVKGIEGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 862
            A  LVV+D PN+AMRHGLN +FS  GV++A  YF++  HRV+GF+PDY LDL +    +R  ++G+ D+++S+LPDDV LL++L +DG ++ TPPQDYDDSYCI+YA    G VVTND+YRDHV  I   ++     +W++SH ISYTFVGDEF PNPDF F
Sbjct:   38 ATSLVVLDAPNIAMRHGLNNRFSSKGVEIASNYFKSRNHRVVGFVPDYLLDLDKVGDRKRLARVGLGDIRSSQLPDDVLLLRKLCEDGTLIGTPPQDYDDSYCIRYAETHGGSVVTNDMYRDHVGKITNHRERKECLQWMRSHLISYTFVGDEFLPNPDFKF 199
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BLAST of mRNA_Ecto-sp13_S_contig5642.15987.1 vs. uniprot
Match: K3W6K7_GLOUD (RNase NYN domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6K7_GLOUD)

HSP 1 Score: 202 bits (513), Expect = 1.290e-59
Identity = 94/159 (59.12%), Postives = 124/159 (77.99%), Query Frame = 2 
Query:  386 LVVIDVPNVAMRHGLNKKFSCTGVQMAVEYFRTAGHRVLGFLPDYYLDLKRTNGLERAKKLGVADVKASRLPDDVQLLQRLVDDGLIVSTPPQDYDDSYCIKYAMARDGYVVTNDLYRDHVKGIEG-RKKADAARRWIKSHSISYTFVGDEFFPNPDFS 859
            L+VID PNVAMRHG +KKFSC G+++A+EYF   GHRV+GFLPDY ++  +    +R +  G+ DV AS++PD+V LLQRLV+DGL++ TP QDYDD+YCI+YA   DG VVTNDLYRDHV+ + G R++  A R W+ +H ISYT+VG+EF PNP+FS
Sbjct:   27 LIVIDAPNVAMRHGFHKKFSCIGIRLAIEYFVQRGHRVVGFLPDYLVEGDQVGERKRMQSAGI-DVPASKIPDNVALLQRLVEDGLLIPTPAQDYDDTYCIQYAGNHDGCVVTNDLYRDHVENMTGPRERKVAMRSWLTAHRISYTWVGNEFLPNPNFS 184
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BLAST of mRNA_Ecto-sp13_S_contig5642.15987.1 vs. uniprot
Match: A0A7S0NB25_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0NB25_9CHLO)

HSP 1 Score: 189 bits (479), Expect = 6.160e-55
Identity = 85/159 (53.46%), Postives = 111/159 (69.81%), Query Frame = 2 
Query:  386 LVVIDVPNVAMRHGLNKKFSCTGVQMAVEYFRTAGHRVLGFLPDYYLDLKRTNGLERAKKLGVADVKASRLPDDVQLLQRLVDDGLIVSTPPQDYDDSYCIKYAMARDGYVVTNDLYRDHVKGIEGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 862
            L+++D PNVAMRHG  K FSC G+++AVEY+   GH+VLGFLP+YY D      +  A KLG+ D K +RLPD++ L+Q+LV+ G +V TPP DYDDSYCI YA    G +VTND Y D+++   G +      +WI+SH IS+TF GDEF PNPDF F
Sbjct:    5 LIILDAPNVAMRHGRKKVFSCEGIRLAVEYWTARGHKVLGFLPEYYTDHAYVGNMRSATKLGLVD-KPARLPDNIALIQKLVEQGQLVLTPPMDYDDSYCIAYARKHGGSIVTNDRYWDYIEKAGGGRARAETLQWIRSHCISFTFAGDEFLPNPDFQF 162
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BLAST of mRNA_Ecto-sp13_S_contig5642.15987.1 vs. uniprot
Match: A0A485LSN2_9STRA (Aste57867_25204 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LSN2_9STRA)

HSP 1 Score: 205 bits (521), Expect = 1.290e-54
Identity = 92/159 (57.86%), Postives = 120/159 (75.47%), Query Frame = 2 
Query:  386 LVVIDVPNVAMRHGLNKKFSCTGVQMAVEYFRTAGHRVLGFLPDYYLDLKRTNGLERAKKLGVADVKASRLPDDVQLLQRLVDDGLIVSTPPQDYDDSYCIKYAMARDGYVVTNDLYRDHVKGIEGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 862
            LVV+D  NVAMRHGLN KFSC G+++  +Y+   GH+V+ FLPDY L  +   G +R   LG  DV  ++LPDDV LLQ +V +GL+++TPPQDYDDSYCI+YA   DG +VTNDL+RDH++ I+G K+  A R W+K+H IS+T+VGDEFFPNPDF F
Sbjct:  801 LVVVDAANVAMRHGLNAKFSCRGIRLVFDYYLARGHKVIAFLPDYLLKYESVGGQKRMASLGF-DVSPTKLPDDVTLLQAMVLEGLVIATPPQDYDDSYCIQYAGTHDGCLVTNDLFRDHLENIKGGKQKGAMREWLKNHRISFTWVGDEFFPNPDFRF 958
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BLAST of mRNA_Ecto-sp13_S_contig5642.15987.1 vs. uniprot
Match: A0A6G0XRT9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRT9_9STRA)

HSP 1 Score: 201 bits (510), Expect = 3.170e-53
Identity = 90/159 (56.60%), Postives = 119/159 (74.84%), Query Frame = 2 
Query:  386 LVVIDVPNVAMRHGLNKKFSCTGVQMAVEYFRTAGHRVLGFLPDYYLDLKRTNGLERAKKLGVADVKASRLPDDVQLLQRLVDDGLIVSTPPQDYDDSYCIKYAMARDGYVVTNDLYRDHVKGIEGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 862
            L+V+D  NVAMRHGLNKKFSC G+++A +YF    H+V+ FLPDY L  +     +R   +G  DV  S++PDDV LLQ +V +GL+++TPPQDYDDSYCI+YA   DG +VTND++RDHV+ I+   + +A R W+KSH IS+T+VGDEFFPNPDF F
Sbjct:  753 LIVVDAANVAMRHGLNKKFSCRGIRLAFDYFLARSHKVIAFLPDYLLKYETVGVQKRMANIGF-DVSPSKVPDDVTLLQSMVLEGLVIATPPQDYDDSYCIQYAGTHDGCLVTNDMFRDHVENIKSNAQRNAMRDWLKSHRISFTWVGDEFFPNPDFRF 910
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BLAST of mRNA_Ecto-sp13_S_contig5642.15987.1 vs. uniprot
Match: A0A1V9YYR1_9STRA (N-acetyltransferase domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YYR1_9STRA)

HSP 1 Score: 197 bits (502), Expect = 7.340e-52
Identity = 94/167 (56.29%), Postives = 122/167 (73.05%), Query Frame = 2 
Query:  368 PRSALPLVVIDVPNVAMRHGLNKKFSCTGVQMAVEYFRTAGHRVLGFLPDYYLDLKRTNGLERAKKLGVADVKASRLPDDVQLLQRLVDDGLIVSTPPQDYDDSYCIKYAMARDGYVVTNDLYRDHVKGIE--GRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 862
            P     L+V+D  NVAMRHGLNK+FSC G+++  +Y+   GH+V+ FLPDY L  +     +R   +G  DV  S+LPDDV LLQ +V +G I++TPPQDYDDSYCI+YA   DG VVTNDL+RDHV+G+   G+KKA A R+W+ +H IS+T+VGDEFFPNPDF F
Sbjct: 1025 PNDPKCLIVVDAANVAMRHGLNKRFSCKGIRLVFDYYLARGHKVIAFLPDYLLTYESVGAQKRMAGIGF-DVNPSKLPDDVALLQSMVLEGTIIATPPQDYDDSYCIQYAGHHDGCVVTNDLFRDHVEGMNASGQKKA-AMRQWLAAHRISFTWVGDEFFPNPDFRF 1189
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BLAST of mRNA_Ecto-sp13_S_contig5642.15987.1 vs. uniprot
Match: A0A835YPQ7_9STRA (Zc3h12a-like ribonuclease NYN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPQ7_9STRA)

HSP 1 Score: 195 bits (495), Expect = 6.320e-51
Identity = 94/166 (56.63%), Postives = 115/166 (69.28%), Query Frame = 2 
Query:  365 APRSALPLVVIDVPNVAMRHGLNKKFSCTGVQMAVEYFRTAGHRVLGFLPDYYLDLKRTNGLERAKKLGVADVKASRLPDDVQLLQRLVDDGLIVSTPPQDYDDSYCIKYAMARDGYVVTNDLYRDHVKGIEGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSF 862
            APR+   LVVIDVPNVAM HG  ++FS  GV++A E+FR AGHRV+GF+P ++LD +R  G   A              +D  LLQ +VD+GL+V TP  DYDDSYCI Y M  +G VVTND YRDH   ++G KK +AARRW+K H+ISYTFVGDEF PNPDF F
Sbjct: 1072 APRAMPELVVIDVPNVAMEHGRGRRFSTRGVRIAAEHFRAAGHRVVGFVPRHHLDARRGAGAAGAAG-----------DEDTALLQAMVDEGLVVPTPAGDYDDSYCIAYCMQHNGCVVTNDQYRDHYAALQGAKKREAARRWVKGHTISYTFVGDEFMPNPDFQF 1226
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BLAST of mRNA_Ecto-sp13_S_contig5642.15987.1 vs. uniprot
Match: A0A067CRV2_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CRV2_SAPPC)

HSP 1 Score: 194 bits (492), Expect = 7.600e-51
Identity = 91/168 (54.17%), Postives = 118/168 (70.24%), Query Frame = 2 
Query:  368 PRSALPLVVIDVPNVAMRHGLNKKFSCTGVQMAVEYFRTAGHRVLGFLPDYYLDLKRTNGLERAKKLGVADVKASRLPDDVQLLQRLVDDGLIVSTPPQDYDDSYCIKYAMARDGYVVTNDLYRDHVKGIEGRKKADAA-RRWIKSHSISYTFVGDEFFPNPDFSFHQ 868
            P     L+V+D  NVAMRHGLN +FSC G+++  +Y+   GH+VL FLPDY L  +     +R    G  DV  S+LPDDV LLQ +V +G +++TPPQDYDDSYCI+YA   DG VVTNDL+RDHV G++G  +  AA R+W+ +H IS+T+VGDEF PNPDF F Q
Sbjct:  720 PNDPKCLIVVDAANVAMRHGLNARFSCAGIRLVFDYYLARGHKVLAFLPDYLLRYESVGAQKRMAGAGY-DVSPSKLPDDVGLLQSMVLEGTVIATPPQDYDDSYCIQYAGRHDGCVVTNDLFRDHVDGLQGTGQQKAAMRQWLSAHCISFTWVGDEFLPNPDFRFPQ 886
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BLAST of mRNA_Ecto-sp13_S_contig5642.15987.1 vs. uniprot
Match: T0QIU5_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QIU5_SAPDV)

HSP 1 Score: 194 bits (492), Expect = 8.190e-51
Identity = 90/166 (54.22%), Postives = 117/166 (70.48%), Query Frame = 2 
Query:  368 PRSALPLVVIDVPNVAMRHGLNKKFSCTGVQMAVEYFRTAGHRVLGFLPDYYLDLKRTNGLERAKKLGVADVKASRLPDDVQLLQRLVDDGLIVSTPPQDYDDSYCIKYAMARDGYVVTNDLYRDHVKGIEGRKKADAA-RRWIKSHSISYTFVGDEFFPNPDFSF 862
            P     L+V+D  NVAMRHGLN +FSC G+++  +Y+   GH+VL FLPDY L  +     +R    G  DV  S+LPDDV LLQ +V +G +++TPPQDYDDSYCI+YA   DG VVTNDL+RDHV G++G  +  AA R+W+ +H IS+T+VGDEF PNPDF F
Sbjct:  734 PNDPKCLIVVDAANVAMRHGLNARFSCAGIRLVFDYYMARGHKVLAFLPDYLLRYESVGAQKRMAGAGY-DVSPSKLPDDVGLLQSMVLEGTVIATPPQDYDDSYCIQYAGRHDGCVVTNDLFRDHVDGLQGNGQTKAAMRQWLSAHCISFTWVGDEFLPNPDFRF 898
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5642.15987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G542_ECTSI3.690e-15296.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2CKB1_9STRA5.960e-6256.17Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K3W6K7_GLOUD1.290e-5959.12RNase NYN domain-containing protein n=1 Tax=Globis... [more]
A0A7S0NB25_9CHLO6.160e-5553.46Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A485LSN2_9STRA1.290e-5457.86Aste57867_25204 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XRT9_9STRA3.170e-5356.60Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1V9YYR1_9STRA7.340e-5256.29N-acetyltransferase domain-containing protein n=1 ... [more]
A0A835YPQ7_9STRA6.320e-5156.63Zc3h12a-like ribonuclease NYN domain-containing pr... [more]
A0A067CRV2_SAPPC7.600e-5154.17Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0QIU5_SAPDV8.190e-5154.22Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5642contigEcto-sp13_S_contig5642:4426..8891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score452.6
Seed ortholog evalue1.2e-124
Seed eggNOG ortholog2880.D7G542
Preferred nameEBS1
Model size1278
KEGG koko:K11124,ko:K11132,ko:K18668
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000184,GO:0000228,GO:0000723,GO:0000781,GO:0000784,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0003824,GO:0004518,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005697,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006278,GO:0006310,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007004,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0010638,GO:0010639,GO:0010833,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0017148,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032205,GO:0032206,GO:0032207,GO:0032208,GO:0032210,GO:0032212,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0034248,GO:0034249,GO:0034399,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0035770,GO:0036464,GO:0042162,GO:0042592,GO:0042886,GO:0043021,GO:0043047,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043565,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044877,GO:0045184,GO:0045910,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046907,GO:0048239,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051052,GO:0051053,GO:0051054,GO:0051128,GO:0051129,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051276,GO:0051641,GO:0051649,GO:0060249,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070034,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0071897,GO:0071919,GO:0072695,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0098687,GO:0098847,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1904356,GO:1904358,GO:1905324,GO:1990904,GO:2000112,GO:2000113,GO:2000278,GO:2000573,GO:2001251,GO:2001252
Exons6
EggNOG free text desc.zinc finger CCCH-type containing
EggNOG OGsKOG2162@1,KOG2162@2759,KOG3777@1,KOG3777@2759
Cds size765
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03032
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5642.15987.1prot_Ecto-sp13_S_contig5642.15987.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5642 4797..8303 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463781.9147706-UTR-Ecto-sp13_S_contig5642:4425..47961681463781.9147706-UTR-Ecto-sp13_S_contig5642:4425..4796Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5642 4426..4796 -
1681463781.9845486-UTR-Ecto-sp13_S_contig5642:8303..83061681463781.9845486-UTR-Ecto-sp13_S_contig5642:8303..8306Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5642 8304..8306 -
1681463781.994769-UTR-Ecto-sp13_S_contig5642:8752..88911681463781.994769-UTR-Ecto-sp13_S_contig5642:8752..8891Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5642 8753..8891 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463781.9288306-CDS-Ecto-sp13_S_contig5642:4796..49921681463781.9288306-CDS-Ecto-sp13_S_contig5642:4796..4992Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5642 4797..4992 -
1681463781.9389286-CDS-Ecto-sp13_S_contig5642:5700..58311681463781.9389286-CDS-Ecto-sp13_S_contig5642:5700..5831Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5642 5701..5831 -
1681463781.94916-CDS-Ecto-sp13_S_contig5642:6616..66921681463781.94916-CDS-Ecto-sp13_S_contig5642:6616..6692Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5642 6617..6692 -
1681463781.9599755-CDS-Ecto-sp13_S_contig5642:7224..73401681463781.9599755-CDS-Ecto-sp13_S_contig5642:7224..7340Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5642 7225..7340 -
1681463781.9728808-CDS-Ecto-sp13_S_contig5642:8057..83031681463781.9728808-CDS-Ecto-sp13_S_contig5642:8057..8303Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5642 8058..8303 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5642.15987.1

>prot_Ecto-sp13_S_contig5642.15987.1 ID=prot_Ecto-sp13_S_contig5642.15987.1|Name=mRNA_Ecto-sp13_S_contig5642.15987.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=255bp
MARSKPSVPGITAASGAGRGGGGRSGRGAGRDAHNPAKIARAGLGDGGAG
GSGRSSSAGAAAGGGGAMFGWPRGAPRSALPLVVIDVPNVAMRHGLNKKF
SCTGVQMAVEYFRTAGHRVLGFLPDYYLDLKRTNGLERAKKLGVADVKAS
RLPDDVQLLQRLVDDGLIVSTPPQDYDDSYCIKYAMARDGYVVTNDLYRD
HVKGIEGRKKADAARRWIKSHSISYTFVGDEFFPNPDFSFHQDGNGGGGG
GGKG*
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mRNA from alignment at Ecto-sp13_S_contig5642:4426..8891-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5642.15987.1 ID=mRNA_Ecto-sp13_S_contig5642.15987.1|Name=mRNA_Ecto-sp13_S_contig5642.15987.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4466bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5642:4426..8891- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCATCGGCAGCCGCGGTGGCGGCACCCGTGCTTCCCGCCACCTCTGCCG
AGAACGGGGCAGCGGCGGCGGCGGTAGGGGGCGGGGGTAGTGGTGGGGCG
CTCCCTGCAGGGGTGCTGGCCGTCGGCGACTTGGCAGAGGTGTGTTGTTG
TTCAGCGACCGCAACACGCGGTATTTGAGGCAACCGGTTTATATTGCACA
CACACACGCGCACACGCCCTCCGACACAATATCTGCTTTTTAGTCTGCCT
TGGCTAGACGCTTAGTAGTTCACGCGCGAGCTCGGATGCGGAGTTTGACG
GTCGACCGCACCACCCTGATTAGATGGGTAGCTATGGTTTTTGGCCCTGG
TTCATACGGAACCTCAACGTCGAGACAAACCAAAAACAAGAAGTGATACA
TCCCCCATGATTGCTGTTTCTGTCACACGGGCGATTGGGTTATTTTCCTT
CACCCTCTCGTCCCATACACCACACTCTCGCGTCAGCTCGAGACCGATGC
GTGGCCAACCGTCAAGTCTTAAGAAGACATCCAAAAGTGACAACCCCTCC
CCTCCCCGAATCGGTCGCCTTTTTCGCCGCACAAGGTGATGGCGAGGTCG
AAACCGTCGGTTCCGGGGATAACGGCAGCGTCAGGCGCCGGGCGCGGCGG
TGGTGGGCGCAGTGGTCGAGGCGCCGGACGGGACGCCCACAATCCGGCTA
AGATCGCACGTGCAGGCCTTGGTGACGGCGGCGCCGGCGGTAGCGGCAGG
TCCTCGAGCGCTGGCGCCGCCGCTGGTGGGGGAGGGGCGATGTTCGGGTG
GCCCCGGGGTGCGCCGAGATCGGCGCTGCCCTTGGTAAGTTTTCTGTGTG
TGTGTGTGTGTCTTGTTCAGTATTTTTAGTTTTATGCGGTCGACCGCGCT
AACCGGTCGGCCAATGGAAGGACGTCAATCTCAGTGCGTGTGTGTGTTTT
GGAAGAATCATCGACCGCGCCACAAAACCAACCTGTCCAGCTTGTGTGTG
TGTGTGTGTGTGTGTTTTTATTGTTTGCGTCAACCGCGCTAACCGGCTTG
ACCAACGAAAAGGTCGTCAGTCTCATCGCGGCTGAAAACAATAAATGCTC
GGAAGGGCCGGGATTTGTGGCGCTTAGGGGGCGTTGTGAAGGCAGGCTTT
CAGACTTGTAGGTGTGCATATTGACGGGTTTTGGGCGGATGACGGTTGTC
CCTTACGGACGTCCCTGTCTCCGGCTATCTCCGGAGGTCCTGTCTCCTGA
GAAGTCAAGCCGCGGCCGCGGACCTCTGGATGTATCCTGTCGAAATTGAA
GGATACACCCGGCACGCGTTGCTCGGGCTTCATGTTTTTATTCTCATGTT
GAATTTTTCGGCGTGTGTCTGATGTGCGTGGAAGGAAACCTGGGCTCGGT
CCCTTTTGAGCCAACTATGCGTGAAAGCGTGAGAAACATGGCGACACCAC
AATCAAGCAACCTCACTGCAAACTGCTGTGCATTGCTGTTCTACTTCCAC
AGCGTTCCGATTACAATTGTAACAGTAAGCAAGCAACACCCCCGACCCCA
GGTGGTGATAGACGTGCCAAACGTGGCGATGCGGCACGGGCTGAACAAGA
AGTTTTCCTGCACTGGAGTGCAGATGGCCGTCGAGTACTTTCGGACGGCG
GGTCACCGCGTCCTGGGGTGAGTTACTTATCTGTTTGTGTTGGGCTTCAC
TTCAAATCAGAGGTCACAGCATCTGTGCCGTTTGCTCCAACAACCCGTGG
TCACACAGAAGGGTTCCTCTGCCTGAGGCCCCCTGCCCACCCCCGCTGCG
GCGCGTCGCCTCCGGTTTCTTGTGCAAGGGAATCTCATGGGTAGCTATTT
TGTCTTTTTCCGAGATGCGTGAGGCCGGCAGGCCCACAATGTTTTCCAGC
TGACGGGAGGCGAGCAACGCGTCCTGTCTGTGTTTGCACCTCTACACGCG
TTATCGGCAAAACAACCAACAAGAGGAAACACGCGGCACGTTTTTTATTC
GGTACTGCTGCTGTTCACAGTAAGAGGTGTTAGCTGGGATGGTACCCGGG
CCCCTCGCTCTTACTGGTTGGAGAAGCACAACAAAATCACGGTGTAGCAG
GCATCAACCGTGACGATTGGTCTCAGAAATGGTTGCTGAAAATTACACAA
CAACTGAGGGAACCACCTACCCCCCGCAAACCGTCACGCCTCCCTTCAGG
TTTCTGCCCGACTACTACCTGGACTTGAAACGGACGAACGGGCTGGAGAG
GGCCAAGAAACTGGGCGTCGCGGATGTGAGTCACGTCGTGGGTGCATATC
CCGGTGCATCAACGTGTACGATGAACAAGCCGTGCAAACAGTGCCAATCA
GTTGATTTTGAGGGATGTTCCTGTTGATTTGTATTTTGTAGTCCTCACCC
ACCGCCTCTACAGCCCAGCGAGGAGTTTTGTTTTCGTCCGACACACCCTC
ATGGATTTGATGAGTACATGTTCCGGTTGTTGTTTCTCCTGGCTGTGTCC
CCCCACCCGGCCTTCATTTCGCGGAATACGCTGGTTTTTGTTGCGTTGTT
GGAGAAAAGATACCACCTAGTCTCGGCCGTGGGCGGGTGTTTTGTGAGGC
ACAAGCCATATGAAACTCGTGGTTTCTCTCGACTGTTGTGCGTGGTGCGT
GTGGACCGACTAGCCTCTGCCCACGAAAGCCATTTACGGGACTAGGAACG
TCCGGCTGCTGAGGCGCGTTAGCCCGCCTTGGGCCGTCGCCTTGGCCCAG
CCGGCGCTTTGCCGCATCCTTACAGGTGTTGATCTTACCCGCGTCCTCGT
CTACGCTTCTCCAACGCCTGTATGTTAGCCTAGTTTTGAGATTTCGGAAT
GTTTTCCTCTCCTGATCCCGTGTGGTGAGGGCTCCCTGCCTCCCCTCCTA
TGTTCGGCTATTCTGACGTTAGCCTAGCTCTAAACCTATTTATCCCCGTG
TGCCACAGGTGAGCGCCCCCCGTCTCCTCTCCCATGGTGGGCTACTCCAA
CGCCTGCACGTTAGCCCATCTCTAAAAGTGTTTTTGTTGCCTTATTCCCT
TGTGCCATAGGTGAAGGCTTCCCGTCTCCCAGATGACGTTCAGCTGCTGC
AGCGCCTTGTGGATGATGGGCTGATCGTGTCCACACCGCCGCAGGACTAC
GACGACTCGTACTGCATCAAGTACGCCATGGCCAGAGACGGGTAAGAGAG
GAAGAAGATAGGGAGGGACGGAGGGAGGGACAGGAAGACAGACACGAGAC
AGAGAGAGAGCGTAGAGACAAGACACACAGACATGCGGACAGAGACTATT
GCACTCGCAATTCGCCTGAGGCAAACCCTGCCGTAGCGATAGAAATTTTC
CCGCCCGTGAAATACGCAAAGGCGAGCCCGTGTTCATTCTTTTCGAGCAA
GCCACGGGCAACTTGTCGTTTGCTAACTTGTCGGTTTTCGCGTCTGTCCC
GCGTTCGGCAGCGTCCGTTTTTTCGTTTCATGAGGAGAGCAAGGACCGTG
CGCCATCTGTACTCCCTCCCCTCTCTGCAATCTTCTCCCCCCTCCGTCCT
ATCTCGCCCAGTGACGAACCACTTTGCAACGAGGTTGGTGGTAGTCCTGA
TGCTTTCCCCATCTCTTGCACCAATCCTGTTTCTGGTGGTTTCTCTCACG
CCGGTCCTGATCTCATCCTTCGTCCCCCCCCGGCGCGTATCCCTTACAGT
GGCGGCAACGGTTCAAGATATACTATTTAACAGAAAGTACCGATTGAAGA
GTCAAACTCGCTTGTCACGACCATGATTACTACATGCATTTCACAGTGCG
GTTTAAGAGATAACCGGATTGAAGAGAAAAAAACTGGCTTGTCACGACCC
TCTCTTGAACCGTACCCGCCACTGTACCCGCTGCCTCTTGATACCCCAGG
TACGTGGTGACGAACGACCTCTATCGTGACCACGTGAAAGGCATCGAAGG
CCGAAAGAAGGCGGACGCCGCCCGGCGCTGGATCAAGTCCCACTCCATCT
CGTACACCTTCGTGGGGGACGAGTTCTTCCCCAACCCGGACTTTTCCTTC
CACCAGGACGGTAACGGCGGTGGCGGCGGCGGCGGGAAAGGTTAGTGGAT
GGCGATGCCCCCCGAAGACGACCTTCCCGCCTGATGTGCAGCAGCGGCAG
CAGCAGTAGCAGCAGCTGTATGGAAGGAAGGCTTGGGCTGGCCAAGCCTG
AGCGGAACCCTGGCGAGGGGGGGAGAGAGGGTGTGGCGAGAGACCGCAGA
CGTCAGAGAAATATTGCTCTCTCTGGAGAGCGGCGTCCGTTTTTGCCGTG
GACAGTGATGGAAAAGGAGGCACAGAGAGAAGAAATAGAGAAGAGAGATG
GATAGATGAAGCCCTACACTCTCTCGCTCACCAACCTGGGTCGTACATTA
GTCCATGCGGCAAAGGGTCCATCCTCTTTTTGCGCCACTCCAGAGCCTAT
ACTGGCTTGCTGCACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5642:4426..8891-

>mRNA_Ecto-sp13_S_contig5642.15987.1 ID=mRNA_Ecto-sp13_S_contig5642.15987.1|Name=mRNA_Ecto-sp13_S_contig5642.15987.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5642:4426..8891- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGAGGTCGAAACCGTCGGTTCCGGGGATAACGGCAGCGTCAGGCGC
CGGGCGCGGCGGTGGTGGGCGCAGTGGTCGAGGCGCCGGACGGGACGCCC
ACAATCCGGCTAAGATCGCACGTGCAGGCCTTGGTGACGGCGGCGCCGGC
GGTAGCGGCAGGTCCTCGAGCGCTGGCGCCGCCGCTGGTGGGGGAGGGGC
GATGTTCGGGTGGCCCCGGGGTGCGCCGAGATCGGCGCTGCCCTTGGTGG
TGATAGACGTGCCAAACGTGGCGATGCGGCACGGGCTGAACAAGAAGTTT
TCCTGCACTGGAGTGCAGATGGCCGTCGAGTACTTTCGGACGGCGGGTCA
CCGCGTCCTGGGGTTTCTGCCCGACTACTACCTGGACTTGAAACGGACGA
ACGGGCTGGAGAGGGCCAAGAAACTGGGCGTCGCGGATGTGAAGGCTTCC
CGTCTCCCAGATGACGTTCAGCTGCTGCAGCGCCTTGTGGATGATGGGCT
GATCGTGTCCACACCGCCGCAGGACTACGACGACTCGTACTGCATCAAGT
ACGCCATGGCCAGAGACGGGTACGTGGTGACGAACGACCTCTATCGTGAC
CACGTGAAAGGCATCGAAGGCCGAAAGAAGGCGGACGCCGCCCGGCGCTG
GATCAAGTCCCACTCCATCTCGTACACCTTCGTGGGGGACGAGTTCTTCC
CCAACCCGGACTTTTCCTTCCACCAGGACGGTAACGGCGGTGGCGGCGGC
GGCGGGAAAGGTTAG
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