mRNA_Ecto-sp13_S_contig5640.15985.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5640.15985.1
Unique NamemRNA_Ecto-sp13_S_contig5640.15985.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5640.15985.1 vs. uniprot
Match: A0A6H5KCU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU2_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.510e-36
Identity = 64/72 (88.89%), Postives = 66/72 (91.67%), Query Frame = 1 
Query:   46 DVERPACYINWCLNAEACIVLKEDGVPVNVRLAGEDD---VGKRCRDYKRADPTMLDTDQLIAKSTQPFHAG 252
            DVERPAC+INWCLNAEACIVLK DGVPVNVRLAGEDD   VGKRCRD KRADPT+LDTDQLIAKSTQPFH G
Sbjct:  133 DVERPACHINWCLNAEACIVLKGDGVPVNVRLAGEDDANCVGKRCRDCKRADPTILDTDQLIAKSTQPFHVG 204
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BLAST of mRNA_Ecto-sp13_S_contig5640.15985.1 vs. uniprot
Match: D8LET1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET1_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.520e-33
Identity = 56/67 (83.58%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:   46 DVERPACYINWCLNAEACIVLKEDGVPVNVRLAGEDDVGKRCRDYKRADPTMLDTDQLIAKSTQPFH 246
            DVERPACYINWCLN +ACI+LKE+G PVNVRLAGEDDV KRC D KRAD T+LDTDQLIAKSTQP H
Sbjct:  134 DVERPACYINWCLNEDACIILKEEGAPVNVRLAGEDDVAKRCSDCKRADSTILDTDQLIAKSTQPCH 200
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BLAST of mRNA_Ecto-sp13_S_contig5640.15985.1 vs. uniprot
Match: D8LKW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW7_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 3.170e-13
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:   46 DVERPACYINWCLNAEACIVLKEDGVPVNVRLAGEDDV 159
            DVERPACYI WCLN +A I+LKE+GVPVN RLAGEDDV
Sbjct:  171 DVERPACYITWCLNGDAGIILKEEGVPVNARLAGEDDV 208
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5640.15985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KCU2_9PHAE1.510e-3688.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LET1_ECTSI1.520e-3383.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LKW7_ECTSI3.170e-1381.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5640contigEcto-sp13_S_contig5640:1250..2051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size252
Hectar predicted targeting categoryother localisation
Exons2
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463781.831664-CDS-Ecto-sp13_S_contig5640:1249..13451681463781.831664-CDS-Ecto-sp13_S_contig5640:1249..1345Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5640 1250..1345 -
1681463781.8430045-CDS-Ecto-sp13_S_contig5640:1895..20511681463781.8430045-CDS-Ecto-sp13_S_contig5640:1895..2051Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5640 1896..2051 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5640.15985.1prot_Ecto-sp13_S_contig5640.15985.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5640 1250..2051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5640.15985.1

>prot_Ecto-sp13_S_contig5640.15985.1 ID=prot_Ecto-sp13_S_contig5640.15985.1|Name=mRNA_Ecto-sp13_S_contig5640.15985.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MYVCMYVTFSFCDQTDVERPACYINWCLNAEACIVLKEDGVPVNVRLAGE
DDVGKRCRDYKRADPTMLDTDQLIAKSTQPFHAG
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mRNA from alignment at Ecto-sp13_S_contig5640:1250..2051-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5640.15985.1 ID=mRNA_Ecto-sp13_S_contig5640.15985.1|Name=mRNA_Ecto-sp13_S_contig5640.15985.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=802bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5640:1250..2051- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATGTATGTATGTATGTCACCTTCTCTTTTTGTGATCAAACAGACGT
GGAACGCCCGGCGTGCTATATTAACTGGTGCCTCAACGCCGAGGCCTGCA
TCGTCCTCAAGGAGGACGGCGTCCCCGTCAACGTTAGGCTGGCCGGCGAG
GACGACGTGAGTCTTTTGCTTCTGTTTTACAAAACTATCTGTCTTTCCCG
CCCCTACCCCCTTCCGTCTGCCTGCCGAACACAACGATACATTAAACATT
TATTCATGTTTGTTCGCCCTGTCCTTCCTGCGGCGCAAAAACAAAATGCT
TGCGAAGGACACGTGTTTGAAATCCCGGCCGTTAAAATGCGCACGGCCAT
GAACACAACACCATAGATTTCCTGCCCGAACATATGCGCACGCACATGCT
CGGTTCAATCACACATTTTTTTGTGGTGTTTGACACCAACCATGATTTTC
AGCGTGAATATGCGCACTACATGTAATGTATAGTATGTGCTCCTGTCTTC
GCTGCTGCGCAAACAGTCAAGCTGACGCAGGACCTACTTCTTTTACATTC
CTAGTGTTTGTGCACACTTTTTTTCTCGTGTTCCACGCCATTATTTTCAG
TCCTCTTTGTCCTGTTCTAAACACCACATTTGCTGCGCAACGACATAATG
CTGACGCAAGACGCATCTTTTTTCCCTCCCACATTTTTCTCGTGCAATTC
ACACAGGTTGGCAAGCGCTGCCGTGACTACAAACGTGCCGACCCGACCAT
GCTGGACACGGACCAGTTAATCGCCAAGTCCACCCAGCCCTTCCACGCGG
GC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5640:1250..2051-

>mRNA_Ecto-sp13_S_contig5640.15985.1 ID=mRNA_Ecto-sp13_S_contig5640.15985.1|Name=mRNA_Ecto-sp13_S_contig5640.15985.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5640:1250..2051- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATGTATGTATGTATGTCACCTTCTCTTTTTGTGATCAAACAGACGT
GGAACGCCCGGCGTGCTATATTAACTGGTGCCTCAACGCCGAGGCCTGCA
TCGTCCTCAAGGAGGACGGCGTCCCCGTCAACGTTAGGCTGGCCGGCGAG
GACGACGTTGGCAAGCGCTGCCGTGACTACAAACGTGCCGACCCGACCAT
GCTGGACACGGACCAGTTAATCGCCAAGTCCACCCAGCCCTTCCACGCGG
GC
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