mRNA_Ecto-sp13_S_contig56385.15981.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56385.15981.1
Unique NamemRNA_Ecto-sp13_S_contig56385.15981.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig56385.15981.1 vs. uniprot
Match: D8LRH6_ECTSI (Ornithine cyclodeaminase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRH6_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 2.240e-44
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 1
Query:    1 ENRFLTDLRTGAAGAVSVKHFAARHHKKVGFVGAGVIAAAMARGSKCVHEFDEGFAYGLDVGKTKEWADEIEAELGYKV 237
            ENRFLTDLRTGAAGAVSVKHFAARHHKKVGFVGAGVIAAAMARGSKCVHEFDEGFAYGLDV KTKEWADEIEAELGYKV
Sbjct:  161 ENRFLTDLRTGAAGAVSVKHFAARHHKKVGFVGAGVIAAAMARGSKCVHEFDEGFAYGLDVVKTKEWADEIEAELGYKV 239          
BLAST of mRNA_Ecto-sp13_S_contig56385.15981.1 vs. uniprot
Match: A0A7S2XZG6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZG6_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.380e-37
Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = 1
Query:    1 ENRFLTDLRTGAAGAVSVKHFAARHHKKVGFVGAGVIAAAMARGSKCVHEFDEGFAYGLDVGKTKEWADEIEAELGYKVHVCKSAEECVRQSDVVFTQTPGSETV 315
            ENR+LTDLRTGAAGA+SVK+F A+ H KV F+GAGVIA AMAR S CVH+F EGFAYGLD  +T+ +  E+ +ELG+   VC++AEE VR +DV+FTQT G+  V
Sbjct:  138 ENRYLTDLRTGAAGAISVKNFVAKEHTKVAFIGAGVIAQAMARASSCVHKFTEGFAYGLDTAQTEGFVSEMSSELGFPFKVCETAEEAVRSADVIFTQTTGAAPV 242          
BLAST of mRNA_Ecto-sp13_S_contig56385.15981.1 vs. uniprot
Match: A0A7S2RSZ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSZ5_9STRA)

HSP 1 Score: 137 bits (345), Expect = 1.140e-36
Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = 1
Query:    1 ENRFLTDLRTGAAGAVSVKHFAARHHKKVGFVGAGVIAAAMARGSKCVHEFDEGFAYGLDVGKTKEWADEIEAELGYKVHVCKSAEECVRQSDVVFTQTPGSETV 315
            ENR+LTDLRTGAAGA+SVKHFA+  HKKV F+G GVIA AMAR +  +H+FD+GFA+GLD G   ++AD I ++LGY V VC +AEE VR +DV+FTQT G+  V
Sbjct:  185 ENRYLTDLRTGAAGAISVKHFASPKHKKVAFIGTGVIAQAMARATNTLHQFDQGFAFGLDDGMNAQFADTIHSQLGYPVQVCATAEEAVRSADVIFTQTTGANHV 289          
BLAST of mRNA_Ecto-sp13_S_contig56385.15981.1 vs. uniprot
Match: A0A7S0H4T2_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H4T2_9EUKA)

HSP 1 Score: 130 bits (326), Expect = 3.030e-34
Identity = 67/109 (61.47%), Postives = 82/109 (75.23%), Query Frame = 1
Query:    1 ENRFLTDLRTGAAGAVSVKHFAARHHKKVGFVGAGVIAAAMARGSKCVHEFDEGFAYGLDVGKTKEWADEIEAELGYKVHVCKSAEECVRQSDVVFTQTPGSETVRRVG 327
            ENR+LTDLRTGAAGAVSVKHFAA+ H KV F+G G+IA AMAR S  VH + E   +GLD  +T+ + DE+EAEL +   VCKSAEE V  SDV+FTQTP ++TV  +G
Sbjct:  137 ENRYLTDLRTGAAGAVSVKHFAAKDHTKVCFLGTGMIAGAMARASSEVHGWTEANCFGLDEAQTQRFCDEMEAELKFPFKVCKSAEEAVGSSDVIFTQTPAAQTVLELG 245          
BLAST of mRNA_Ecto-sp13_S_contig56385.15981.1 vs. uniprot
Match: A0A7S0H4X0_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H4X0_9EUKA)

HSP 1 Score: 124 bits (312), Expect = 3.290e-33
Identity = 64/103 (62.14%), Postives = 78/103 (75.73%), Query Frame = 1
Query:    1 ENRFLTDLRTGAAGAVSVKHFAARHHKKVGFVGAGVIAAAMARGSKCVHEFDEGFAYGLDVGKTKEWADEIEAELGYKVHVCKSAEECVRQSDVVFTQTPGSE 309
            ENR+LTDLRTGAAGAVSVKHFAA+ H KV F+G G+IA AMAR S  VH + E   +GLD  +T+ + DE+EAEL +   VCKSAEE V  SDV+FTQTP ++
Sbjct:  137 ENRYLTDLRTGAAGAVSVKHFAAKDHTKVCFLGTGMIAGAMARASSEVHGWTEANCFGLDEAQTQRFCDEMEAELKFPFKVCKSAEEAVGSSDVIFTQTPAAQ 239          
BLAST of mRNA_Ecto-sp13_S_contig56385.15981.1 vs. uniprot
Match: A0A6T5N8F9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5N8F9_HETAK)

HSP 1 Score: 126 bits (316), Expect = 9.410e-33
Identity = 64/106 (60.38%), Postives = 77/106 (72.64%), Query Frame = 1
Query:    1 ENRFLTDLRTGAAGAVSVKHFAAR-HHKKVGFVGAGVIAAAMARGSKCVHEFDEGFAYGLDVGKTKEWADEIEAELGYKVHVCKSAEECVRQSDVVFTQTPGSETV 315
            ENR+LTDLRTGAAGA+SVK+F A   HK + F+G G IA +MA+G+ CVH F++GF YGLD    + +A EIEA  GY V VC +AEE VR  DVVFTQT GS  V
Sbjct:  139 ENRYLTDLRTGAAGALSVKYFGASPKHKNISFIGTGAIAESMAKGTACVHNFEQGFCYGLDRAMNERFAAEIEATCGYPVKVCDTAEEAVRSGDVVFTQTVGSSVV 244          
BLAST of mRNA_Ecto-sp13_S_contig56385.15981.1 vs. uniprot
Match: C1E6G7_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1E6G7_MICCC)

HSP 1 Score: 124 bits (311), Expect = 4.150e-31
Identity = 63/105 (60.00%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    1 ENRFLTDLRTGAAGAVSVKHFAARHHKKVGFVGAGVIAAAMARGSKCVHEFDEGFAYGLDVGKTKEWADEIEAELGYKVHVCKSAEECVRQSDVVFTQTPGSETV 315
            ENR+LTDLRTGAAGAV+VKH A +  K V F+G GVIA AMAR S  VH F++G+ Y  D+ K   + D++ AELGY    C SAEE VR +DVVFTQTPG E V
Sbjct:  301 ENRYLTDLRTGAAGAVAVKHLAIKDAKSVAFIGTGVIAEAMARSSATVHGFEQGYGYSRDMTKNSAFCDKMSAELGYAFTPCSSAEEAVRNADVVFTQTPGGEWV 405          
BLAST of mRNA_Ecto-sp13_S_contig56385.15981.1 vs. uniprot
Match: A0A7S0NJ63_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NJ63_MICPS)

HSP 1 Score: 124 bits (311), Expect = 9.240e-31
Identity = 63/105 (60.00%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    1 ENRFLTDLRTGAAGAVSVKHFAARHHKKVGFVGAGVIAAAMARGSKCVHEFDEGFAYGLDVGKTKEWADEIEAELGYKVHVCKSAEECVRQSDVVFTQTPGSETV 315
            ENR+LTDLRTGAAGAV+VKH A +  K V F+G GVIA AMAR S  VH F++G+ Y  D+ K   + D++ AELGY    C SAEE VR +DVVFTQTPG E V
Sbjct:  301 ENRYLTDLRTGAAGAVAVKHLAIKDAKSVAFIGTGVIAEAMARSSATVHGFEQGYGYSRDMTKNSAFCDKMSAELGYAFTPCSSAEEAVRNADVVFTQTPGGEWV 405          
BLAST of mRNA_Ecto-sp13_S_contig56385.15981.1 vs. uniprot
Match: A0A7S0KS13_MICPS (Threonine ammonia-lyase n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KS13_MICPS)

HSP 1 Score: 124 bits (311), Expect = 1.070e-30
Identity = 63/105 (60.00%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    1 ENRFLTDLRTGAAGAVSVKHFAARHHKKVGFVGAGVIAAAMARGSKCVHEFDEGFAYGLDVGKTKEWADEIEAELGYKVHVCKSAEECVRQSDVVFTQTPGSETV 315
            ENR+LTDLRTGAAGAV+VKH A +  K V F+G GVIA AMAR S  VH F++G+ Y  D+ K   + D++ AELGY    C SAEE VR +DVVFTQTPG E V
Sbjct:  673 ENRYLTDLRTGAAGAVAVKHLAIKDAKSVAFIGTGVIAEAMARSSATVHGFEQGYGYSRDMTKNSAFCDKMSAELGYAFTPCSSAEEAVRNADVVFTQTPGGEWV 777          
BLAST of mRNA_Ecto-sp13_S_contig56385.15981.1 vs. uniprot
Match: C1MM99_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MM99_MICPC)

HSP 1 Score: 116 bits (291), Expect = 3.800e-29
Identity = 57/105 (54.29%), Postives = 74/105 (70.48%), Query Frame = 1
Query:    1 ENRFLTDLRTGAAGAVSVKHFAARHHKKVGFVGAGVIAAAMARGSKCVHEFDEGFAYGLDVGKTKEWADEIEAELGYKVHVCKSAEECVRQSDVVFTQTPGSETV 315
            ENR+LTD+RTGAAGAV VKH A +  K V F+G GVIA +MAR +  V+ F++G+ Y  ++ K   + D+++ ELGY    C SAEE VR +DVVFTQTPG E V
Sbjct:  133 ENRYLTDMRTGAAGAVCVKHLAVKGAKSVAFIGTGVIAESMARSTATVYGFEQGYGYSRNIDKATAFCDKMQKELGYDFKACDSAEEAVRNADVVFTQTPGGEWV 237          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56385.15981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRH6_ECTSI2.240e-4498.73Ornithine cyclodeaminase n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S2XZG6_9STRA2.380e-3762.86Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2RSZ5_9STRA1.140e-3662.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0H4T2_9EUKA3.030e-3461.47Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S0H4X0_9EUKA3.290e-3362.14Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A6T5N8F9_HETAK9.410e-3360.38Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
C1E6G7_MICCC4.150e-3160.00Uncharacterized protein n=2 Tax=Micromonas TaxID=3... [more]
A0A7S0NJ63_MICPS9.240e-3160.00Hypothetical protein (Fragment) n=2 Tax=Micromonas... [more]
A0A7S0KS13_MICPS1.070e-3060.00Threonine ammonia-lyase n=1 Tax=Micromonas pusilla... [more]
C1MM99_MICPC3.800e-2954.29Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56385contigEcto-sp13_S_contig56385:542..883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score141.0
Seed ortholog evalue3.5e-31
Seed eggNOG ortholog227086.JGI_V11_49337
Model size342
KEGG rclassRC00354
KEGG koko:K01750
KEGG ReactionR00671
KEGG Pathwayko00330,ko01110,ko01130,ko01230,map00330,map01110,map01130,map01230
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.thiomorpholine-carboxylate dehydrogenase activity
EggNOG OGsCOG2423@1,KOG3007@2759
Ec32 ortholog descriptionOrnithine cyclodeaminase
Ec32 orthologEc-18_004550.1
EC4.3.1.12
Cds size342
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463781.382779-CDS-Ecto-sp13_S_contig56385:541..8831681463781.382779-CDS-Ecto-sp13_S_contig56385:541..883Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56385 542..883 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56385.15981.1prot_Ecto-sp13_S_contig56385.15981.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56385 542..883 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56385.15981.1

>prot_Ecto-sp13_S_contig56385.15981.1 ID=prot_Ecto-sp13_S_contig56385.15981.1|Name=mRNA_Ecto-sp13_S_contig56385.15981.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
ENRFLTDLRTGAAGAVSVKHFAARHHKKVGFVGAGVIAAAMARGSKCVHE
FDEGFAYGLDVGKTKEWADEIEAELGYKVHVCKSAEECVRQSDVVFTQTP
GSETVRRVGGSPG*
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mRNA from alignment at Ecto-sp13_S_contig56385:542..883+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56385.15981.1 ID=mRNA_Ecto-sp13_S_contig56385.15981.1|Name=mRNA_Ecto-sp13_S_contig56385.15981.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56385:542..883+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAACCGGTTCCTGACCGACCTGCGGACCGGTGCCGCGGGGGCGGTGTC CGTCAAGCACTTCGCTGCCCGGCACCACAAGAAGGTCGGCTTCGTCGGCG CCGGCGTCATCGCCGCGGCGATGGCGCGGGGCTCCAAGTGCGTGCACGAG TTCGACGAGGGCTTCGCGTACGGGCTGGACGTGGGGAAGACGAAGGAGTG GGCCGACGAGATCGAGGCGGAGCTGGGGTACAAGGTGCACGTCTGCAAGT CGGCAGAGGAGTGCGTTCGCCAGTCGGACGTGGTCTTTACCCAGACTCCA GGGTCCGAGACGGTGCGCCGAGTAGGGGGTTCGCCCGGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56385:542..883+

>mRNA_Ecto-sp13_S_contig56385.15981.1 ID=mRNA_Ecto-sp13_S_contig56385.15981.1|Name=mRNA_Ecto-sp13_S_contig56385.15981.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56385:542..883+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAACCGGTTCCTGACCGACCTGCGGACCGGTGCCGCGGGGGCGGTGTC
CGTCAAGCACTTCGCTGCCCGGCACCACAAGAAGGTCGGCTTCGTCGGCG
CCGGCGTCATCGCCGCGGCGATGGCGCGGGGCTCCAAGTGCGTGCACGAG
TTCGACGAGGGCTTCGCGTACGGGCTGGACGTGGGGAAGACGAAGGAGTG
GGCCGACGAGATCGAGGCGGAGCTGGGGTACAAGGTGCACGTCTGCAAGT
CGGCAGAGGAGTGCGTTCGCCAGTCGGACGTGGTCTTTACCCAGACTCCA
GGGTCCGAGACGGTGCGCCGAGTAGGGGGTTCGCCCGGGTAG
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