mRNA_Ecto-sp13_S_contig5636.15977.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5636.15977.1
Unique NamemRNA_Ecto-sp13_S_contig5636.15977.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5636.15977.1 vs. uniprot
Match: D7FJ41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ41_ECTSI)

HSP 1 Score: 344 bits (882), Expect = 1.800e-112
Identity = 201/216 (93.06%), Postives = 209/216 (96.76%), Query Frame = 1 
Query:  484 LNLNVFGWGGDNEAKTKAKQEAEDAEARDALRKAREERLERELEESGAAEEAEKVGDDKTAGGILVSMAKPAEPVRQAAVLSDKRLWLDVVEPFFASVSLAISSLYPLWHTLRGMFGLSLLFYGDDFATLAFHIVVFRISGWKKAAKSKDELVAYYKKARRTMTKAAKDVRASAAIIARKNRXXXXXXXXXXXXKRLLAMGRVSAQEARAFIDKYR 1131
            +NL+VFGWGGDNEAK KAKQEAEDAEARDALRKAREERLERELEESGAAEEAE VGDDKTAGGILVSMAKPAEPVRQ A+LSDKRLWLDVVEPFFASVSLAISSLYPLWHTLRGMFGLSLLFYG+DFATLAFHIVVFRISGWKKAAKSKDELVAYYKKAR+TMTKAAKDVRASAAIIARK+RXXXXXXXXXXXX    A+GRVSA+EARAFIDKYR
Sbjct:    1 MNLSVFGWGGDNEAKRKAKQEAEDAEARDALRKAREERLERELEESGAAEEAENVGDDKTAGGILVSMAKPAEPVRQVALLSDKRLWLDVVEPFFASVSLAISSLYPLWHTLRGMFGLSLLFYGEDFATLAFHIVVFRISGWKKAAKSKDELVAYYKKARQTMTKAAKDVRASAAIIARKDRXXXXXXXXXXXXXXXHAIGRVSAEEARAFIDKYR 216
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BLAST of mRNA_Ecto-sp13_S_contig5636.15977.1 vs. uniprot
Match: A0A835YUQ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUQ5_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.300e-16
Identity = 51/131 (38.93%), Postives = 81/131 (61.83%), Query Frame = 1 
Query:  739 LWLDVVEPFFASVSLAISSLYPLWHTLRGMFGLSLLFYGDDFATLAFHIVVFRISGWKKAAKSKDELVAYYKKARRTMTKAAKDVRASAAIIARKNRXXXXXXXXXXXXKRLLAMGRVSAQEARAFIDKYR 1131
            LWLD  E     + +AIS+L P+W  ++ +FG+S+LFYG +F T+AFHI++FRISG+K   K   +LV++YKKAR+    AA+   +    +A++              + +L  GR++A+EAR FI ++R
Sbjct:   47 LWLDWAEVL---LPVAISALTPVWRLVKLLFGISILFYGSNFQTIAFHIIIFRISGYKSVIKHCRDLVSHYKKARKATALAARHTLSLNESLAQQKLRREEREHMLRDRQEMLRDGRITAEEARQFITRHR 174
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BLAST of mRNA_Ecto-sp13_S_contig5636.15977.1 vs. uniprot
Match: A0A835Z8D7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8D7_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.900e-13
Identity = 52/146 (35.62%), Postives = 81/146 (55.48%), Query Frame = 1 
Query:  694 PAEPVRQAAVLSDKRLWLDVVEPFFASVSLAISSLYPLWHTLRGMFGLSLLFYGDDFATLAFHIVVFRISGWKKAAKSKDELVAYYKKARRTMTKAAKDVRASAAIIARKNRXXXXXXXXXXXXKRLLAMGRVSAQEARAFIDKYR 1131
            P    +Q    +   L L+ VE     V+L  +   PLW   + +FGLS+LFYG +F TLA HI++FRISG+K   +   EL ++Y K R     AAK+ ++    +A+K +            +++L  GR++A+EA+AFI K+R
Sbjct:   11 PVITKQQGKNAARNELILERVEALAPKVALVTT---PLWRVTKLLFGLSILFYGLNFKTLALHIIIFRISGYKDVMQHMGELQSHYTKVRAATEAAAKNTKSLNESLAQKAKRREAREKMLVDRQQMLKDGRITAEEAQAFIAKHR 153
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BLAST of mRNA_Ecto-sp13_S_contig5636.15977.1 vs. uniprot
Match: D8LTP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP3_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 4.510e-8
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:  724 LSDKRLWLDVVEPFFASVSLAISSL-YPLWHTLRGMFGLSLLFYGDDFATLAFHIVVFRISGWKKAAKSKDELVAYYKKARRTMTKAA 984
            +   R++LD VE    S+   +  +  P  H  R  FGLSLLFYG  F T AFH++VFRISG+K+   S  +L A Y+KAR+++ +AA
Sbjct:    1 MQKNRIFLDNVEDILGSLGRRLQMVGKPALHLTRLGFGLSLLFYGMAFRTFAFHVIVFRISGFKQVQVSSGKLAAKYRKARQSIREAA 88
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BLAST of mRNA_Ecto-sp13_S_contig5636.15977.1 vs. uniprot
Match: A0A835Z464_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z464_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 6.540e-8
Identity = 43/131 (32.82%), Postives = 71/131 (54.20%), Query Frame = 1 
Query:  736 RLWLDVVEPFFASVSLAISSLYPLWHTLRGMFGLSLLFYGDDFATLAFHIVVFRISGWKKAAKSKDELVAYYKKARRTMTKAAKDVRASAAIIARKNRXXXXXXXXXXXXKRLLAMGRVSAQEARAFIDKY 1128
            +L+L+ VE    +V+  +  + P++ +L+ +FGLS+LF+G  F +LA HI++F+I G+KK       LVA+Y++ R     AA+  R +                     K +LA GR+   EARAF+ K+
Sbjct:   64 KLFLEHVE---GAVNAVVPVVAPVFFSLKALFGLSILFFGMTFKSLALHIILFQIVGFKKVVMHWHHLVAHYRRVRAATLHAARSARRTLKEREDTGARVREQEAMLRDRKAMLADGRLDVDEARAFMAKH 191
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5636.15977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FJ41_ECTSI1.800e-11293.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YUQ5_9STRA2.300e-1638.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z8D7_9STRA2.900e-1335.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LTP3_ECTSI4.510e-844.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z464_9STRA6.540e-832.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5636contigEcto-sp13_S_contig5636:5083..8482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1134
Hectar predicted targeting categorysignal peptide
Exons5
Cds size1134
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463780.940739-CDS-Ecto-sp13_S_contig5636:5082..51571681463780.940739-CDS-Ecto-sp13_S_contig5636:5082..5157Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5636 5083..5157 +
1681463780.9502485-CDS-Ecto-sp13_S_contig5636:6201..67221681463780.9502485-CDS-Ecto-sp13_S_contig5636:6201..6722Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5636 6202..6722 +
1681463780.9591403-CDS-Ecto-sp13_S_contig5636:6896..69971681463780.9591403-CDS-Ecto-sp13_S_contig5636:6896..6997Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5636 6897..6997 +
1681463780.9679585-CDS-Ecto-sp13_S_contig5636:7235..74531681463780.9679585-CDS-Ecto-sp13_S_contig5636:7235..7453Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5636 7236..7453 +
1681463780.9766564-CDS-Ecto-sp13_S_contig5636:8263..84821681463780.9766564-CDS-Ecto-sp13_S_contig5636:8263..8482Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5636 8264..8482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5636.15977.1prot_Ecto-sp13_S_contig5636.15977.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5636 5083..8482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5636.15977.1

>prot_Ecto-sp13_S_contig5636.15977.1 ID=prot_Ecto-sp13_S_contig5636.15977.1|Name=mRNA_Ecto-sp13_S_contig5636.15977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=378bp
MKQRARLIALGILVVECVGGRHLAVLHEECCSRKGQGKGGSCERVHRQQR
CWYKDAGKFSSVTRERKRRGRHDAQFQECASSQHASRRERSAVRAVAPYG
VKAGCVCQGCPTEASWLDPENGASISGSRRKGPAPSVVRFRGGSASTRET
KGAIKEDSGWGLNLNVFGWGGDNEAKTKAKQEAEDAEARDALRKAREERL
ERELEESGAAEEAEKVGDDKTAGGILVSMAKPAEPVRQAAVLSDKRLWLD
VVEPFFASVSLAISSLYPLWHTLRGMFGLSLLFYGDDFATLAFHIVVFRI
SGWKKAAKSKDELVAYYKKARRTMTKAAKDVRASAAIIARKNRLVARKEE
MMVEKKRLLAMGRVSAQEARAFIDKYR*
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mRNA from alignment at Ecto-sp13_S_contig5636:5083..8482+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5636.15977.1 ID=mRNA_Ecto-sp13_S_contig5636.15977.1|Name=mRNA_Ecto-sp13_S_contig5636.15977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3400bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5636:5083..8482+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCAACGAGCCAGACTGATCGCTCTCGGGATTCTTGTCGTGGAGTG
CGTTGGAGGTCGTCATTTGGCGGTCGTGAGTCATTCCTCTCTGAGCTTTC
AAAATGTGACTGTTGGTGCGTTTCCAGATGTCGTGTACAGCAGTCAGGAG
TATAAAGACTCCTTGTAGCACGGTAGTACCTGGTACGAGCGTTTTGAAAA
TTCCATTACATGTCAGCGCGTACAGTTGTTCAACAGACAGTCATGTTGAG
TACATGACATGTGCATTGCGGGGCAGGAGAAGATCCTACAGCAGTAGCAG
CTGGATCCCACGATGACTACATGTACCGAACCAAATCTCTGCATGGGTTT
CACATGTCCGTCTCTAGGCTGGATAGCACACCAGACGCTGCTGTCAAGGG
AACACTTACTCGTAGCAGCAGTATCGTCCACAGCAGTACATTCATGGCGT
ATCGCGCATGCTAGTGTTTCAAATGACAGGAGGTACACAGCAGTTTACGG
CTTTCGTGCTTTGGTGTACGCGCGGTGCATGTCTTGCTGCTGCCGTACAT
GAGCAGTGGAAACGTCGCTGTGTACACAGCAGTACACAGGCTACAGCAGT
AGACGGTCACTGAAAAGAGGAAATACGAGATGGCCACCGAAGCCAACTGT
TCCATAAATATATGCTCCACACCATCGTTGAAAGATGCTACCCTTCTGTT
AAACACACAGCGTGGAAGCACTAATGCATCAATACATCCGGGACACATAA
GTCGGAACCTCCCGCCCCCAACACAACAGCACTCTCTCTCCCTCTCTCTC
TCCCCCCTCTCTCCCCCCCCCCCCCCCCCCCCCCCTCTCTCTCCGTGCAT
GCTCCGAGTTGGCTGCGACGAGAATATAGAGAACACGAGGGGTATTGCAG
AATTACAAAGGCGTGAGTGCTTTACGCTTTACTTTCGACCACATGGTTTC
TGTTGCACGACTCAGAGGAGAAACCATTTGCGGGGCGCCAAGCTGTTACA
ATCACGGACGGATGCGGTTTTGTACTTGCCTGCTTTGTTGTGTCCCGCGA
TACTACACTATCCTCTTCGTGACTGAAACCGCTGTGCGTACCACAAATTT
GCTTTGTTGTCAATAGCAGCTGCACGAGGAGTGCTGTTCCAGAAAAGGGC
AGGGGAAGGGTGGATCATGTGAGCGGGTGCACCGACAACAGCGTTGTTGG
TACAAGGATGCCGGCAAATTCTCTTCAGTCACACGGGAGCGAAAGAGACG
AGGGCGGCATGATGCACAGTTCCAAGAATGTGCCTCCAGCCAGCATGCGT
CAAGAAGAGAACGCAGCGCTGTGCGGGCGGTTGCACCGTATGGGGTCAAG
GCGGGGTGTGTCTGTCAGGGCTGCCCTACGGAAGCGAGCTGGTTAGATCC
TGAAAATGGGGCAAGTATCAGCGGGAGCAGGAGAAAGGGGCCGGCCCCAT
CTGTGGTGCGGTTCCGAGGTGGAAGCGCATCCACGCGCGAGACCAAAGGC
GCCATCAAGGAGGACAGCGGTTGGGGCTTGAATCTGAATGTTTTCGGCTG
GGGCGGAGACAACGAGGCGAAGACGAAAGCCAAACAGGAAGCGGAAGACG
CAGAAGCCAGAGATGCATTGAGGAAGGCCAGGGAGGAGAGGTGTGCCCAC
ATTGGGCTGATCACGAGATACACGAATATCGATGGGCCGGTGAAGTTCCC
TTTCTTGAGCATTGTATACTACACCGCTGACTGGTTATTGTCGCTGTCCC
AAACTGAGTTGGTTTGCCTAAACATGACCTGCTCTGATCCGTGCTGCGGT
TACGTGAAACAAAGGTTGGAGCGCGAGCTAGAAGAGAGCGGAGCGGCAGA
GGAAGCCGAGAAAGTTGGGGACGACAAGACAGCTGGTGGCATTCTCGTCT
CCATGGCAAAACCTGGTGCGTTAGTTTGCTCACGCCTGGCCATCAGGCGG
CCTTCCTCTTCCGTCCCCTGCTACAGGCATCCGATATTGTTCATTTGGTT
ATAAAAACGTGTTCTGTGTTCCTCGTGCGAGATGCACATGGTTCTCTTAC
TCCCATGCTTGCGTGCCCGCTGATACTCAATTTCCATCACCCCGTGAAAT
GTTTTGCCATGTCTCCGCCTACCGTACCTACTGGACACGCCGGCCTTCTG
CAGCTGAGCCTGTCCGGCAGGCTGCTGTGCTGAGCGACAAGCGGTTGTGG
CTTGACGTGGTGGAACCGTTCTTTGCTAGTGTTTCTCTGGCTATATCCTC
TCTCTACCCTCTGTGGCACACGCTGCGGGGGATGTTCGGCCTTTCGCTTC
TTTTTTACGGGGACGATTTCGCCACACTAGCGTTTCACATCGTCGTCTTC
AGGATATCGGGATGGAAGAAGGTTCGTGCAGATCCGAAATATCAGACTTT
TTTATGCAACGCGGTTCTTCAGTGTTGGGATGTGCATTGTCACCTGGCAC
GCAGATGGTATTTGATGTGCTGCAAACCTGATCCAGGCGGTATGGACGCG
GGTTCTAAATTTTTTGGGATATGTCGCTGAAGAGTTGGGGAGGGGAGTCT
ACATATACAGCACACCGATATGAAAGCGCTATCTTCGCCGCGTGTTGCTC
TCGGTGGTGATATATCTTTCAACGCATGGAACAGACAGACTTAAGACGTA
GGCTGGTTTGGCTTGAGAAACCAACATGAGCGCTTGATCGTGCAATTACA
TCGCGCACACCAACTTACTGCCCTGATTGTACATGTTACGCATGGGCTGC
CACACTGCTGCACACCAACGGTGTTGTGGATATTCCAGCAGTGGGGACGG
CGCGTCAACCCTCCAGCGGCAGTTGAAATAGTACTGTGAATACGAGCGCT
TTCAGCGGCACCCATGTGGAGTTGTCGATGCGCCAGACCCATTCTGTGTA
CCACTTGAATCCGTCGTTTGCTTGACTATTGAACAAACTTCGGCAAGGGG
CGGCTCGATAGACTCCCCGCAGAGAAAGTGTGCGCTTTCATGAAGTGGCA
GCATCGGAACGGTGGTGTTCGTGAACACGTCTTGCTCCACCCCTGAACTC
GGACCGGCGGTAGCTATCAGTGAGCACATCGTAGGAGGTCCCACCCATCC
GACCGGTGTGTTCCTGGAATGCTCCTCCTACAAGCGTGAATGCATGCGCC
GCGTGTCTATGTGGTGTGGAACAAATCGCAGGCAGCCAAGTCCAAGGACG
AACTTGTGGCGTACTACAAGAAGGCGAGGCGAACCATGACCAAGGCAGCC
AAGGACGTCCGCGCAAGCGCCGCCATCATTGCCCGAAAGAACAGGTTGGT
GGCCCGAAAGGAGGAGATGATGGTGGAAAAGAAGAGACTGCTCGCAATGG
GCCGCGTAAGCGCACAAGAGGCACGTGCCTTCATCGACAAGTACAGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5636:5083..8482+

>mRNA_Ecto-sp13_S_contig5636.15977.1 ID=mRNA_Ecto-sp13_S_contig5636.15977.1|Name=mRNA_Ecto-sp13_S_contig5636.15977.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1134bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5636:5083..8482+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCAACGAGCCAGACTGATCGCTCTCGGGATTCTTGTCGTGGAGTG
CGTTGGAGGTCGTCATTTGGCGGTCCTGCACGAGGAGTGCTGTTCCAGAA
AAGGGCAGGGGAAGGGTGGATCATGTGAGCGGGTGCACCGACAACAGCGT
TGTTGGTACAAGGATGCCGGCAAATTCTCTTCAGTCACACGGGAGCGAAA
GAGACGAGGGCGGCATGATGCACAGTTCCAAGAATGTGCCTCCAGCCAGC
ATGCGTCAAGAAGAGAACGCAGCGCTGTGCGGGCGGTTGCACCGTATGGG
GTCAAGGCGGGGTGTGTCTGTCAGGGCTGCCCTACGGAAGCGAGCTGGTT
AGATCCTGAAAATGGGGCAAGTATCAGCGGGAGCAGGAGAAAGGGGCCGG
CCCCATCTGTGGTGCGGTTCCGAGGTGGAAGCGCATCCACGCGCGAGACC
AAAGGCGCCATCAAGGAGGACAGCGGTTGGGGCTTGAATCTGAATGTTTT
CGGCTGGGGCGGAGACAACGAGGCGAAGACGAAAGCCAAACAGGAAGCGG
AAGACGCAGAAGCCAGAGATGCATTGAGGAAGGCCAGGGAGGAGAGGTTG
GAGCGCGAGCTAGAAGAGAGCGGAGCGGCAGAGGAAGCCGAGAAAGTTGG
GGACGACAAGACAGCTGGTGGCATTCTCGTCTCCATGGCAAAACCTGCTG
AGCCTGTCCGGCAGGCTGCTGTGCTGAGCGACAAGCGGTTGTGGCTTGAC
GTGGTGGAACCGTTCTTTGCTAGTGTTTCTCTGGCTATATCCTCTCTCTA
CCCTCTGTGGCACACGCTGCGGGGGATGTTCGGCCTTTCGCTTCTTTTTT
ACGGGGACGATTTCGCCACACTAGCGTTTCACATCGTCGTCTTCAGGATA
TCGGGATGGAAGAAGGCAGCCAAGTCCAAGGACGAACTTGTGGCGTACTA
CAAGAAGGCGAGGCGAACCATGACCAAGGCAGCCAAGGACGTCCGCGCAA
GCGCCGCCATCATTGCCCGAAAGAACAGGTTGGTGGCCCGAAAGGAGGAG
ATGATGGTGGAAAAGAAGAGACTGCTCGCAATGGGCCGCGTAAGCGCACA
AGAGGCACGTGCCTTCATCGACAAGTACAGGTGA
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