mRNA_Ecto-sp13_S_contig56354.15975.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56354.15975.1
Unique NamemRNA_Ecto-sp13_S_contig56354.15975.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig56354.15975.1 vs. uniprot
Match: A0A6H5KYW9_9PHAE (CULLIN_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW9_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 4.770e-48
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 1
Query:    1 AENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHITEV 264
            AENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHITE+
Sbjct:  233 AENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHITEM 320          
BLAST of mRNA_Ecto-sp13_S_contig56354.15975.1 vs. uniprot
Match: A0A7S3UPV7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UPV7_HETAK)

HSP 1 Score: 124 bits (311), Expect = 4.910e-33
Identity = 61/85 (71.76%), Postives = 72/85 (84.71%), Query Frame = 1
Query:    1 AENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHI 255
            AE ALE E+ RVANYLNPSTEAKLLRV D E+LEKRE +LLEKEGSGC+ LLANDK++DL+RMYRLF+R+P GL PMA I +  +
Sbjct:   43 AERALEEERQRVANYLNPSTEAKLLRVVDQELLEKRESVLLEKEGSGCRALLANDKAEDLARMYRLFSRVPDGLAPMAAIAQQFV 127          
BLAST of mRNA_Ecto-sp13_S_contig56354.15975.1 vs. uniprot
Match: A0A835YLK2_9STRA (Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK2_9STRA)

HSP 1 Score: 125 bits (314), Expect = 2.310e-31
Identity = 60/86 (69.77%), Postives = 75/86 (87.21%), Query Frame = 1
Query:    1 AENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHIT 258
            AE AL+ E+ RV +YLN +TE KLLRVCD EMLEK +  LLEKEGSGC+VLLANDKS+DLSRM+RLF+R+P+GL+PMA I+++HIT
Sbjct:  235 AEAALDCERARVGHYLNAATEPKLLRVCDREMLEKHQTELLEKEGSGCRVLLANDKSEDLSRMFRLFSRIPQGLQPMANIVREHIT 320          
BLAST of mRNA_Ecto-sp13_S_contig56354.15975.1 vs. uniprot
Match: A0A7S3JSF7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSF7_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.830e-30
Identity = 59/85 (69.41%), Postives = 73/85 (85.88%), Query Frame = 1
Query:    1 AENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHI 255
            AE ALEAEK RVANYLN S+E KLLRVC+ E+LEKRE  LLEK+GSGC+ LLAND+++DL+RM+RLF+R+P GL PMA ++K HI
Sbjct:  231 AEKALEAEKQRVANYLNSSSEPKLLRVCESELLEKRETSLLEKDGSGCRALLANDRANDLARMFRLFSRVPNGLPPMAALVKAHI 315          
BLAST of mRNA_Ecto-sp13_S_contig56354.15975.1 vs. uniprot
Match: A0A7R9ZBG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBG0_9STRA)

HSP 1 Score: 118 bits (295), Expect = 6.330e-29
Identity = 58/88 (65.91%), Postives = 75/88 (85.23%), Query Frame = 1
Query:    1 AENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHITEV 264
            AE AL  EK RVA+YLNP++E+KLLRVC++E+LEK E +LLEKEGSGC+VLLANDKS+DL RM+ LF+RL KGL PMA+I++  I+ +
Sbjct:  271 AERALIEEKNRVADYLNPASESKLLRVCEEEILEKVEMVLLEKEGSGCRVLLANDKSEDLRRMFHLFSRLDKGLNPMADIVEKFISSM 358          
BLAST of mRNA_Ecto-sp13_S_contig56354.15975.1 vs. uniprot
Match: F0XVV7_AURAN (CULLIN_2 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVV7_AURAN)

HSP 1 Score: 118 bits (296), Expect = 6.340e-29
Identity = 58/85 (68.24%), Postives = 72/85 (84.71%), Query Frame = 1
Query:    1 AENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHI 255
            AE AL+AEK RVA+YLN ++E KLLRVC+ E+LE RE +LLEKEGSGC+ LLANDK+ DLSRMYRLF+R+P GL PMA +++ HI
Sbjct:  231 AEVALDAEKARVAHYLNSASEPKLLRVCEHEILELRETVLLEKEGSGCRALLANDKAADLSRMYRLFSRVPNGLPPMAALVRAHI 315          
BLAST of mRNA_Ecto-sp13_S_contig56354.15975.1 vs. uniprot
Match: A0A7S4ILC2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ILC2_9STRA)

HSP 1 Score: 118 bits (295), Expect = 8.650e-29
Identity = 58/88 (65.91%), Postives = 75/88 (85.23%), Query Frame = 1
Query:    1 AENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHITEV 264
            AE AL  EK RVA+YLNP++E+KLLRVC++E+LEK E +LLEKEGSGC+VLLANDKS+DL RM+ LF+RL KGL PMA+I++  I+ +
Sbjct:  237 AERALIEEKNRVADYLNPASESKLLRVCEEEILEKVEMVLLEKEGSGCRVLLANDKSEDLRRMFHLFSRLDKGLNPMADIVEKFISSM 324          
BLAST of mRNA_Ecto-sp13_S_contig56354.15975.1 vs. uniprot
Match: A0A7S1B6G2_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B6G2_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.200e-28
Identity = 59/96 (61.46%), Postives = 77/96 (80.21%), Query Frame = 1
Query:    1 AENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHITEVRRFRVQAR 288
            AE AL  EK RVA+YLNPS+EAK+L+VC++E+LE+ E +LLEKEGSGCKVLLAN+K+DDL RM+RLF R+  GL PMA I++  I+E+    V+ R
Sbjct:  232 AEKALANEKARVADYLNPSSEAKILKVCEEEILEEVEMVLLEKEGSGCKVLLANNKADDLRRMFRLFARIDNGLVPMANIVQVFISEIGHEHVKGR 327          
BLAST of mRNA_Ecto-sp13_S_contig56354.15975.1 vs. uniprot
Match: A0A7S1VSX6_9STRA (Hypothetical protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VSX6_9STRA)

HSP 1 Score: 112 bits (281), Expect = 6.760e-27
Identity = 56/88 (63.64%), Postives = 72/88 (81.82%), Query Frame = 1
Query:    1 AENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHITEV 264
            AE AL  E+ RV +YLN S+E KLL+VC++E+LEK E+ LLEKEGSGC+VLLANDKS+DL RM+RLF+RL  GL PMA I++  IT++
Sbjct:  232 AEVALNDERTRVGDYLNASSETKLLKVCEEEILEKVERPLLEKEGSGCRVLLANDKSEDLKRMFRLFSRLENGLNPMATIVQTFITDM 319          
BLAST of mRNA_Ecto-sp13_S_contig56354.15975.1 vs. uniprot
Match: A0A4D9DID3_9STRA (CULLIN_2 domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DID3_9STRA)

HSP 1 Score: 112 bits (281), Expect = 6.790e-27
Identity = 57/85 (67.06%), Postives = 69/85 (81.18%), Query Frame = 1
Query:    1 AENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEKREKILLEKEGSGCKVLLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHI 255
            AE ALE EK RVANYLN  TE KLL+V  +E+LEK+E  LLE+EGSGC +LL NDK +DLSRMYRLF+R+P GL PMA+I++ HI
Sbjct:  234 AEAALEEEKARVANYLNAETEEKLLKVVIEELLEKQETTLLEREGSGCAMLLTNDKYEDLSRMYRLFSRVPSGLLPMAKIVQAHI 318          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56354.15975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYW9_9PHAE4.770e-4898.86CULLIN_2 domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S3UPV7_HETAK4.910e-3371.76Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YLK2_9STRA2.310e-3169.77Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7S3JSF7_9STRA2.830e-3069.41Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7R9ZBG0_9STRA6.330e-2965.91Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
F0XVV7_AURAN6.340e-2968.24CULLIN_2 domain-containing protein n=1 Tax=Aureoco... [more]
A0A7S4ILC2_9STRA8.650e-2965.91Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1B6G2_9STRA2.200e-2861.46Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S1VSX6_9STRA6.760e-2763.64Hypothetical protein n=2 Tax=Grammatophora oceanic... [more]
A0A4D9DID3_9STRA6.790e-2767.06CULLIN_2 domain-containing protein n=3 Tax=Monodop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56354contigEcto-sp13_S_contig56354:9..618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score174.5
Seed ortholog evalue2.5e-41
Seed eggNOG ortholog2880.D7FY17
Model size300
KEGG koko:K03347
KEGG Pathwayko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04340,ko04341,ko04350,ko04710,ko05168,ko05200,map04110,map04111,map04114,map04120,map04141,map04310,map04340,map04341,map04350,map04710,map05168,map05200
KEGG ModuleM00379,M00380,M00381,M00382,M00387,M00407,M00411
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsCOG5647@1,KOG2166@2759
Cds size300
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463780.8382802-CDS-Ecto-sp13_S_contig56354:8..1151681463780.8382802-CDS-Ecto-sp13_S_contig56354:8..115Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56354 9..115 +
1681463780.8486323-CDS-Ecto-sp13_S_contig56354:425..6181681463780.8486323-CDS-Ecto-sp13_S_contig56354:425..618Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56354 426..618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56354.15975.1prot_Ecto-sp13_S_contig56354.15975.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56354 9..618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56354.15975.1

>prot_Ecto-sp13_S_contig56354.15975.1 ID=prot_Ecto-sp13_S_contig56354.15975.1|Name=mRNA_Ecto-sp13_S_contig56354.15975.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
AENALEAEKLRVANYLNPSTEAKLLRVCDDEMLEKREKILLEKEGSGCKV
LLANDKSDDLSRMYRLFNRLPKGLEPMAEIIKDHITEVRRFRVQARTRGA
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mRNA from alignment at Ecto-sp13_S_contig56354:9..618+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56354.15975.1 ID=mRNA_Ecto-sp13_S_contig56354.15975.1|Name=mRNA_Ecto-sp13_S_contig56354.15975.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=610bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56354:9..618+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAAAACGCCCTAGAGGCTGAGAAGCTTCGAGTGGCGAACTACCTCAA CCCGTCCACGGAGGCCAAGCTGCTGCGGGTCTGCGACGACGAGATGCTCG AGAAGAGGTGGGCAGAATGCAACTCGACCGAGTAGGAACCGTCATAGTAG CCATGCCTGGGAGCATGAATGGCGGGGCAGCCTACGTGTGATTTTTTTTT TTTGGAACGTGTTGGGGTGGAGTATTTGGTTGGGAGCATGAGGGGGCAGC CTGATGCGGGAAGTGTGGTTTTGTGGTTTTGTTGGGAAGTCCGTGCCGGG CGGAGATTGTAACAGCAGCGCGCTCGTGTAGCTCCAGGACTCTTGTTAGT ACAAAGTAATCGACGTGAGGTTTTTGACCTCTCGTTTGATCGGTCGTCTC GGCTTGGCCCCACGCAGAGAGAAAATCCTGCTCGAGAAGGAAGGGAGCGG GTGCAAGGTCCTCCTCGCCAACGACAAGTCCGACGACCTCAGCCGGATGT ACCGCCTCTTCAACCGACTCCCCAAGGGGCTGGAGCCCATGGCGGAGATA ATCAAGGACCATATCACAGAGGTACGTAGGTTTCGCGTTCAAGCGCGCAC ACGCGGCGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56354:9..618+

>mRNA_Ecto-sp13_S_contig56354.15975.1 ID=mRNA_Ecto-sp13_S_contig56354.15975.1|Name=mRNA_Ecto-sp13_S_contig56354.15975.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56354:9..618+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAAAACGCCCTAGAGGCTGAGAAGCTTCGAGTGGCGAACTACCTCAA
CCCGTCCACGGAGGCCAAGCTGCTGCGGGTCTGCGACGACGAGATGCTCG
AGAAGAGAGAGAAAATCCTGCTCGAGAAGGAAGGGAGCGGGTGCAAGGTC
CTCCTCGCCAACGACAAGTCCGACGACCTCAGCCGGATGTACCGCCTCTT
CAACCGACTCCCCAAGGGGCTGGAGCCCATGGCGGAGATAATCAAGGACC
ATATCACAGAGGTACGTAGGTTTCGCGTTCAAGCGCGCACACGCGGCGCG
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