mRNA_Ecto-sp13_S_contig56303.15970.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56303.15970.1
Unique NamemRNA_Ecto-sp13_S_contig56303.15970.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig56303.15970.1 vs. uniprot
Match: D7FUX3_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUX3_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 2.740e-53
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 2 
Query:    2 CFETIGAAYAIINFSLTNAEAGSIFAACGAIGVITLLSMRLLCKHFNDIQLVLGGVSLMIVTCAMLALPPTFIGLHVFIAAVFLVYSIGYPIGHTAV 292
            CFETIGAAYAIINFSLTNAEAGSIFAACGAIGV+TLLSMRLLCKHFNDIQLVLGGVSLMIVTCAMLALPPTFIGLHVFIAAVFLVYSIGYPIGHTAV
Sbjct:  388 CFETIGAAYAIINFSLTNAEAGSIFAACGAIGVVTLLSMRLLCKHFNDIQLVLGGVSLMIVTCAMLALPPTFIGLHVFIAAVFLVYSIGYPIGHTAV 484
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BLAST of mRNA_Ecto-sp13_S_contig56303.15970.1 vs. uniprot
Match: D8LI51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI51_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 9.950e-53
Identity = 94/97 (96.91%), Postives = 95/97 (97.94%), Query Frame = 2 
Query:    2 CFETIGAAYAIINFSLTNAEAGSIFAACGAIGVITLLSMRLLCKHFNDIQLVLGGVSLMIVTCAMLALPPTFIGLHVFIAAVFLVYSIGYPIGHTAV 292
            CFETIGAAYAI  FSLTNAEAGSIFAACGAIGV+TLLSMRLLCKHFNDIQLVLGGVSLMIVTCAMLALPPTFIGLHVFIAAVFLVYSIGYPIGHTAV
Sbjct:  259 CFETIGAAYAITTFSLTNAEAGSIFAACGAIGVVTLLSMRLLCKHFNDIQLVLGGVSLMIVTCAMLALPPTFIGLHVFIAAVFLVYSIGYPIGHTAV 355
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BLAST of mRNA_Ecto-sp13_S_contig56303.15970.1 vs. uniprot
Match: D8LI50_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI50_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 4.530e-47
Identity = 86/97 (88.66%), Postives = 93/97 (95.88%), Query Frame = 2 
Query:    2 CFETIGAAYAIINFSLTNAEAGSIFAACGAIGVITLLSMRLLCKHFNDIQLVLGGVSLMIVTCAMLALPPTFIGLHVFIAAVFLVYSIGYPIGHTAV 292
            CFETIGAAYAI  FSLT+AEAGS+FA CGAIGV+ LLSMRLLCKHFNDIQLVLGG+SLMIVTCAMLALPPTFIGL+VFIAAVFL+YS+GYPIGHTAV
Sbjct:  474 CFETIGAAYAITTFSLTSAEAGSVFATCGAIGVVALLSMRLLCKHFNDIQLVLGGMSLMIVTCAMLALPPTFIGLNVFIAAVFLMYSVGYPIGHTAV 570
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BLAST of mRNA_Ecto-sp13_S_contig56303.15970.1 vs. uniprot
Match: D8LGE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE0_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.190e-28
Identity = 60/98 (61.22%), Postives = 79/98 (80.61%), Query Frame = 2 
Query:    2 CFETIGAAYAIINFSLTNAEAGSIFAACGAIGVITLLSMRLLCKHFNDIQLVLGGVSLMIVTCAMLALPPTFI-GLHVFIAAVFLVYSIGYPIGHTAV 292
            CFET+GA YA+ +F +T+AEAGSIFA  G+IGV++LLSMRL+C++ ND+Q+VLGG+ +MIV C M    P    GL +F+ AVFL+YS+GYPIGHTAV
Sbjct:  373 CFETLGAEYAMTHFGMTSAEAGSIFATFGSIGVVSLLSMRLICRYLNDVQIVLGGMGVMIVACLMFVRSPEGASGLPLFLWAVFLMYSVGYPIGHTAV 470
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BLAST of mRNA_Ecto-sp13_S_contig56303.15970.1 vs. uniprot
Match: A0A6H5KUL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUL2_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.050e-27
Identity = 59/98 (60.20%), Postives = 78/98 (79.59%), Query Frame = 2 
Query:    2 CFETIGAAYAIINFSLTNAEAGSIFAACGAIGVITLLSMRLLCKHFNDIQLVLGGVSLMIVTCAMLALPPTFI-GLHVFIAAVFLVYSIGYPIGHTAV 292
            CFET+GA YA+ +F +T+AEAGS FA  G+IGV++LLSMRL+C++ ND+Q+VLGG+ +MIV C M    P    GL +F+ AVFL+YS+GYPIGHTAV
Sbjct:  545 CFETLGAEYAMTHFGMTSAEAGSTFATFGSIGVVSLLSMRLICRYLNDVQIVLGGMGVMIVACLMFVRNPEGASGLPLFLWAVFLMYSVGYPIGHTAV 642
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BLAST of mRNA_Ecto-sp13_S_contig56303.15970.1 vs. uniprot
Match: A0A7S1XVC4_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVC4_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.920e-20
Identity = 48/97 (49.48%), Postives = 69/97 (71.13%), Query Frame = 2 
Query:    2 CFETIGAAYAIINFSLTNAEAGSIFAACGAIGVITLLSMRLLCKHFNDIQLVLGGVSLMIVTCAMLALPPTFIGLHVFIAAVFLVYSIGYPIGHTAV 292
            CFET+GA +A   FS++   AG +FA CGA GV++LL  R LC  F+++QL+LGG+ +M+V+C  +A   +   ++ F  AV L+Y+IGYPIGHTAV
Sbjct:  379 CFETLGAMFAFAVFSMSIPSAGQLFAGCGAAGVVSLLFFRPLCNVFDEVQLILGGILVMVVSCLTVASLHSTTPIYFFYGAVALMYAIGYPIGHTAV 475
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BLAST of mRNA_Ecto-sp13_S_contig56303.15970.1 vs. uniprot
Match: A0A835YNN7_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN7_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.210e-20
Identity = 49/99 (49.49%), Postives = 72/99 (72.73%), Query Frame = 2 
Query:    2 CFETIGAAYAIINFSLTNAEAGSIFAACGAIGVITLLSMRLLCKHFNDIQLVLGGVSLMIVTCAML--ALPPTFIGLHVFIAAVFLVYSIGYPIGHTAV 292
            C+ET+GA+YA+    L++   G+ FAA GA+GV  L+SMR LC+ FND+QL++GGV++M+ + A+L  A  P   G   F+ ++FL YS+GYPIGHT+V
Sbjct:  300 CYETLGASYAVSALGLSHGNIGAFFAAFGALGVAALVSMRWLCRVFNDVQLIVGGVAVMLASTALLLDAGAPGRAGDIAFVVSIFLQYSVGYPIGHTSV 398
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BLAST of mRNA_Ecto-sp13_S_contig56303.15970.1 vs. uniprot
Match: A0A836C8M5_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M5_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 8.930e-20
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = 2 
Query:    5 FETIGAAYAIINFSLTNAEAGSIFAACGAIGVITLLSMRLLCKHFNDIQLVLGGVSLMIVTCAMLALPPTFIGLHV--FIAAVFLVYSIGYPIGHTAV 292
            +ET+GA YAI   SL+ A AG  FA  GA GV+ LLSM  L + FND+QL++GG  +M+++CA+L +P    GL    F+A++FL YSIGYPIGH+AV
Sbjct:  356 YETLGANYAINTLSLSPASAGLFFATFGAGGVVALLSMGALSRRFNDVQLIVGGAVVMLLSCALLVVPTQGGGLGYAGFVASIFLQYSIGYPIGHSAV 453
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BLAST of mRNA_Ecto-sp13_S_contig56303.15970.1 vs. uniprot
Match: A0A7S3UZ09_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZ09_HETAK)

HSP 1 Score: 87.0 bits (214), Expect = 6.650e-18
Identity = 48/97 (49.48%), Postives = 67/97 (69.07%), Query Frame = 2 
Query:    2 CFETIGAAYAIINFSLTNAEAGSIFAACGAIGVITLLSMRLLCKHFNDIQLVLGGVSLMIVTCAMLALPPTFIGLHVFIAAVFLVYSIGYPIGHTAV 292
            C+ET+G   AI +F ++  +AG +F++CG +GV  LLSM+ L    +DI+LV  G  +M+ +  +L L    IGLH F AAVFL+YS+GYPIGHTAV
Sbjct:  306 CYETLGTIVAIGSFGMSKPDAGFLFSSCGFLGVFALLSMKCLTAWADDIKLVFYGCLVMVASATLLFLDAR-IGLHGFFAAVFLMYSVGYPIGHTAV 401
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BLAST of mRNA_Ecto-sp13_S_contig56303.15970.1 vs. uniprot
Match: A0A7R9U7B3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7B3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.790e-17
Identity = 48/98 (48.98%), Postives = 67/98 (68.37%), Query Frame = 2 
Query:    2 CFETIGAAYAIINFSLTNAEAGSIFAACGAIGVITLLSMRLLCKHFNDIQLVLGGVSLMIVTC-AMLALPPTFIGLHVFIAAVFLVYSIGYPIGHTAV 292
            CFET+GA +AI  F+++   AG  F+ CG +GVI LL M  L + F+++QL+ GG+ LM V+C  + AL P  + +  F  AV L+YSIGYP+GHTAV
Sbjct:   72 CFETLGAMFAIAVFNMSIPSAGQTFSTCGTVGVIALLFMGPLVRVFDEVQLIAGGLVLMSVSCFTIAALEPDSL-IAFFFVAVALMYSIGYPVGHTAV 168
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56303.15970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUX3_ECTSI2.740e-5398.97MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LI51_ECTSI9.950e-5396.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LI50_ECTSI4.530e-4788.66MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LGE0_ECTSI1.190e-2861.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUL2_9PHAE1.050e-2760.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1XVC4_9STRA1.920e-2049.48Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A835YNN7_9STRA2.210e-2049.49Major facilitator superfamily domain-containing pr... [more]
A0A836C8M5_9STRA8.930e-2053.06Major facilitator superfamily domain-containing pr... [more]
A0A7S3UZ09_HETAK6.650e-1849.48Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7R9U7B3_9STRA1.790e-1748.98Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56303contigEcto-sp13_S_contig56303:28..810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size306
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463780.3592427-CDS-Ecto-sp13_S_contig56303:28..2701681463780.3592427-CDS-Ecto-sp13_S_contig56303:28..270Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56303 29..270 -
1681463780.3716147-CDS-Ecto-sp13_S_contig56303:749..8101681463780.3716147-CDS-Ecto-sp13_S_contig56303:749..810Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56303 750..810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56303.15970.1prot_Ecto-sp13_S_contig56303.15970.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56303 29..810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56303.15970.1

>prot_Ecto-sp13_S_contig56303.15970.1 ID=prot_Ecto-sp13_S_contig56303.15970.1|Name=mRNA_Ecto-sp13_S_contig56303.15970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
VLRDHRRGVRDHQFFAHQRRGRLHLCGLRSDRRDHPPVHAAPVQALQRHP
TGPGRRVTHDRDVRHAGLAPHLHRLARVHRGGVLGILHRISYRPHGGEFS
L
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mRNA from alignment at Ecto-sp13_S_contig56303:28..810-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56303.15970.1 ID=mRNA_Ecto-sp13_S_contig56303.15970.1|Name=mRNA_Ecto-sp13_S_contig56303.15970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=783bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56303:28..810- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCTTCGAGACCATCGGCGCGGCGTACGCGATCATCAATTTTTCGCTCA
CCAACGCAGAGGTGACACGGGAGACAGAGAGGGGGATACTGATCGGGAAA
ACGAGATGTTTTGGGGGGGAGATGCTGCTGCTCGAAGAGATGCGCAATTC
CCGCCCGGCTGTGTTCGTGATAGCAAGCCAAGCGAAATCGCAAGCGCCCA
CGCATGTAAACGTAACCTTTCCAAGGATGCAATTCCCCAACAATAGCACG
TTCTATCCTCTCCCTGTTTGGTGTACGCGGCGGTAGGTATGATCCACGAA
CCCTCGTGTTGGTGTGATCGATGGTTTGGGAGCTACGGAGTCCCCGATGC
CTTGGGGTCTCGGTGGCTCACCTCTCCTCGTACTCCGTGCGCGTCAATAC
GACTGATGACCAAACTAGTGGAAGTGCGTCTTATGTATCTCCACACCGAT
CGGCTGCTAGGGTGTCAACGTTTGGTCACCCGCCTAATTCGCGAGCAAAA
CATGTCGAACATTTATTCTTCGAAACTCTTTTTATTTTAGGCCGGCTCCA
TCTTTGCGGCCTGCGGAGCGATAGGCGTGATCACCCTCCTGTCCATGCGG
CTCCTGTGCAAGCACTTCAACGACATCCAACTGGTCCTGGGAGGCGTGTC
ACTCATGATCGTGACGTGCGCCATGCTGGCCTTGCCCCCCACCTTCATCG
GCTTGCACGTGTTCATCGCGGCGGTGTTCTTGGTATACTCCATCGGATAT
CCTATCGGCCACACGGCGGTGAGTTTTCTCTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56303:28..810-

>mRNA_Ecto-sp13_S_contig56303.15970.1 ID=mRNA_Ecto-sp13_S_contig56303.15970.1|Name=mRNA_Ecto-sp13_S_contig56303.15970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56303:28..810- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCTTCGAGACCATCGGCGCGGCGTACGCGATCATCAATTTTTCGCTCA
CCAACGCAGAGGCCGGCTCCATCTTTGCGGCCTGCGGAGCGATAGGCGTG
ATCACCCTCCTGTCCATGCGGCTCCTGTGCAAGCACTTCAACGACATCCA
ACTGGTCCTGGGAGGCGTGTCACTCATGATCGTGACGTGCGCCATGCTGG
CCTTGCCCCCCACCTTCATCGGCTTGCACGTGTTCATCGCGGCGGTGTTC
TTGGTATACTCCATCGGATATCCTATCGGCCACACGGCGGTGAGTTTTCT
CTT
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