mRNA_Ecto-sp13_S_contig5629.15968.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5629.15968.1
Unique NamemRNA_Ecto-sp13_S_contig5629.15968.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5629.15968.1 vs. uniprot
Match: D7FZM0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM0_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 8.660e-93
Identity = 138/146 (94.52%), Postives = 142/146 (97.26%), Query Frame = 1
Query:    1 MTVPSTCSNGLPGYQDGQACCLMNCGMCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCIIPATPAPTPAPALTLMPTPVPFLAGNANDFVNGSTSAADPGMLRGPASLVLPLATATAAFLGALAFGAAHQHQSARGGAV 438
            MTVPSTCSNGLPGYQDGQACCLMNCG+CGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCIIPATPAPTPAPALTLMPTPVPFLAGNANDF+N  T+AADPGMLR PASLVLPLATATAAFLGALAFGAAHQHQ+ARGG V
Sbjct:    1 MTVPSTCSNGLPGYQDGQACCLMNCGLCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCIIPATPAPTPAPALTLMPTPVPFLAGNANDFIN-DTNAADPGMLREPASLVLPLATATAAFLGALAFGAAHQHQAARGGGV 145          
BLAST of mRNA_Ecto-sp13_S_contig5629.15968.1 vs. uniprot
Match: A0A6H5JSV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSV2_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.970e-33
Identity = 63/67 (94.03%), Postives = 64/67 (95.52%), Query Frame = 1
Query:  244 MPTPVPFLAGNANDFVNGSTSAADPGMLRGPASLVLPLATATAAFLGALAFGAAHQHQSARGGAVRN 444
            MPTPVPFLAGNANDFVN +TSAADPGMLRGP SLVLPLATATAAFLGALAFGAAHQHQ ARGGAVRN
Sbjct:    1 MPTPVPFLAGNANDFVNSTTSAADPGMLRGPGSLVLPLATATAAFLGALAFGAAHQHQPARGGAVRN 67          
BLAST of mRNA_Ecto-sp13_S_contig5629.15968.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 2.130e-19
Identity = 49/96 (51.04%), Postives = 61/96 (63.54%), Query Frame = 1
Query:   10 PSTCSNGLPGYQDGQACCLMNCGMCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCIIPATPAPTPAPALTLMPTPVPFLAGNANDFVNG 297
            PSTCSNG+ GYQDG  CCL  CG CGGDGCG++ GT G+ +CCPSTI+ +  VCG    APCII      TPAPA+    T  P+     ++ + G
Sbjct:  372 PSTCSNGIAGYQDGAICCLEICGRCGGDGCGTIPGTGGSDNCCPSTILAAGVVCGE---APCIIEGY---TPAPAVVGGGTTAPYGTSTCSNGILG 461          
BLAST of mRNA_Ecto-sp13_S_contig5629.15968.1 vs. uniprot
Match: A0A6H5JSA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA0_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.870e-16
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 1
Query:   10 PSTCSNGLPGYQDGQACCLMNCGMCGGDGCGSVNGTAGASDCCPSTII 153
            PSTCSNG+PGYQDG  CCL  CG CGGDGCG++ GT G+ +CCPS I+
Sbjct:   86 PSTCSNGIPGYQDGVICCLEICGRCGGDGCGTIPGTGGSDNCCPSDIL 133          
BLAST of mRNA_Ecto-sp13_S_contig5629.15968.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 3.240e-14
Identity = 35/75 (46.67%), Postives = 44/75 (58.67%), Query Frame = 1
Query:    7 VPSTCSNGLPGYQDGQACCLMNCGMCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCIIPATPAPTPAP 231
            V   CSNG+PG Q G ACCL  CG CGG GC  + G  GA +CC S I +   +C   + APCI+ +   P P+P
Sbjct: 2880 VDDVCSNGIPGIQTGNACCLAECGGCGGTGCAQLGGGLGADNCCMSEIEDFGELCSATMTAPCIVDSVSGPAPSP 2954          
BLAST of mRNA_Ecto-sp13_S_contig5629.15968.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.040e-13
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 1
Query:   16 TCSNGLPGYQDGQACCLMNCGMCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCIIPATPAPTPAPALTLMPT 252
            TCSNG+PG Q G ACCL  CG CGG GC  + G  G  +CC S I +   +C   + APC++  +    PAP+   MPT
Sbjct: 1768 TCSNGIPGIQSGNACCLAECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVDGS---APAPSPVAMPT 1843          
BLAST of mRNA_Ecto-sp13_S_contig5629.15968.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 9.520e-11
Identity = 32/69 (46.38%), Postives = 38/69 (55.07%), Query Frame = 1
Query:   19 CSNGLPGYQDGQACCLMNCGMCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCIIPATPAPTP 225
            CSNG+PG Q G +CCL  CG CGG GC    G  G  +CC   I     +C   + APC + A P PTP
Sbjct:  448 CSNGIPGIQSGDSCCLAECGACGGSGCAEFGGGLGEDNCCAVRIEEYGELCSVALAAPCYVDAPP-PTP 515          
BLAST of mRNA_Ecto-sp13_S_contig5629.15968.1 vs. uniprot
Match: A0A6H5K6S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6S4_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 3.990e-10
Identity = 31/61 (50.82%), Postives = 33/61 (54.10%), Query Frame = 1
Query:   19 CSNGLPGYQDGQACCLMNCGMCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCII 201
            CSNG  G Q G ACCL  CG CGG GCG   G  GA  CC S I     +C   + APC I
Sbjct:  446 CSNGFSGIQSGNACCLAECGECGGHGCGEFGGGLGADKCCESDIEEYGELCSIALAAPCYI 506          
BLAST of mRNA_Ecto-sp13_S_contig5629.15968.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.230e-8
Identity = 31/63 (49.21%), Postives = 36/63 (57.14%), Query Frame = 1
Query:   13 STCSNGLPGYQDGQACCLMNCGMCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCII 201
            +TCSNGL G + G  CC + CG CGG GCGS  G     DCC STI     +C     APC+I
Sbjct:   22 TTCSNGLSGLEKGGVCCPVECGTCGGTGCGSRPGLT-KYDCCTSTIKEDNHLCSVTKEAPCVI 83          
BLAST of mRNA_Ecto-sp13_S_contig5629.15968.1 vs. uniprot
Match: A0A6H5JW06_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW06_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 2.280e-7
Identity = 26/66 (39.39%), Postives = 34/66 (51.52%), Query Frame = 1
Query:    1 MTVPSTCSNGLPGYQDGQACCLMNCGMCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCI 198
            +T   TC NGL G  +G  CC + CG CGG GC +       +DCC + I  +  +C     APCI
Sbjct:    4 VTTAQTCDNGLAGVSNGDYCCTLGCGTCGGPGCSTRAEGLDGNDCCTANIAQNGILCAESGAAPCI 69          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5629.15968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FZM0_ECTSI8.660e-9394.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSV2_9PHAE2.970e-3394.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZM1_ECTSI2.130e-1951.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSA0_9PHAE1.870e-1668.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ68_ECTSI3.240e-1446.67WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JG29_9PHAE2.040e-1345.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ37_9PHAE9.520e-1146.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6S4_9PHAE3.990e-1050.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNF5_9PHAE3.230e-849.21MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5JW06_9PHAE2.280e-739.39WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5629contigEcto-sp13_S_contig5629:4976..6203 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score80.9
Seed ortholog evalue5.6e-13
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
Model size447
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_003620.1
EC2.7.7.19
Cds size447
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463780.1871803-CDS-Ecto-sp13_S_contig5629:4975..50411681463780.1871803-CDS-Ecto-sp13_S_contig5629:4975..5041Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5629 4976..5041 +
1681463780.1997523-CDS-Ecto-sp13_S_contig5629:5486..56251681463780.1997523-CDS-Ecto-sp13_S_contig5629:5486..5625Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5629 5487..5625 +
1681463780.209553-CDS-Ecto-sp13_S_contig5629:5961..62031681463780.209553-CDS-Ecto-sp13_S_contig5629:5961..6203Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5629 5962..6203 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5629.15968.1prot_Ecto-sp13_S_contig5629.15968.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5629 4976..6203 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5629.15968.1

>prot_Ecto-sp13_S_contig5629.15968.1 ID=prot_Ecto-sp13_S_contig5629.15968.1|Name=mRNA_Ecto-sp13_S_contig5629.15968.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
MTVPSTCSNGLPGYQDGQACCLMNCGMCGGDGCGSVNGTAGASDCCPSTI
INSARVCGGDIVAPCIIPATPAPTPAPALTLMPTPVPFLAGNANDFVNGS
TSAADPGMLRGPASLVLPLATATAAFLGALAFGAAHQHQSARGGAVRN*
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mRNA from alignment at Ecto-sp13_S_contig5629:4976..6203+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5629.15968.1 ID=mRNA_Ecto-sp13_S_contig5629.15968.1|Name=mRNA_Ecto-sp13_S_contig5629.15968.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5629:4976..6203+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGTCCCATCGACGTGCAGCAATGGGCTTCCTGGATACCAAGACGG GCAAGCTTGCTGCTTGGTGAGTCGTGGTATGAGTACAAGACGCAGTAGTT ATGGTAATTTTGGTAGCAGCGGCAGGAGCTATAATTGTAGTAGTAGAAGG TGGTGGTGGTGTTGCTGTCGACCGTTTCGACCCACCCACCTACTAAGCGA TTGGTGTGGTTACGGGCGTGTGTTTTTTTGTCCAATCGATTCTAGGCGAC AGTCTTTTCTACGCCGTTCGGTCCATGTTTAAAGGACCAGGCGAGGTCAC ACAGGAGGAAGGCAAACACTGGAGCGTTACTTTTGCTTGTACGCGCGTGC GCTGTCATGTTTTTGTCGCTCTGCAGCTGAATCGCGGTGGCATGTGCAAC TGCTGTAGGACGGTCAACACTGAAGCCGTTCCTTGTTCTTCTTTCTAAAT TGCGCCTTTTCCCCTTGTGCGCGATCGTGCGTCCGTCTTGTTTCGCTTGC CTCTTTTTTAGATGAATTGTGGCATGTGTGGCGGCGACGGATGTGGATCT GTGAACGGAACTGCTGGTGCATCGGACTGCTGCCCTTCCACGATTATCAA CTCCGCACGGGTATGCGGCGGCGACATCGTGGCTCCGTGCATCATCCCTG GTGAGAACACCGTATGTGCACCACATGCAGCTACTACTGCTGTGCCCCCC GTCAATGAGGCTGTTGCACCCTTCGCTTACGTAGAGCTCCAGGCTTATTC TGAATGGATCTTGGCTCATTTTTCGCTGCTGGCGACGCTTGCAGCTGTTT ATTTTTTACGTAGAGCCCCAGGCTTCATTCATGACGGATCTTGATTCATA TTCTGCTGGTGGCAGGTAGTTTGTGGCTGATCAACCGCAGAATGATACCC CCAAATTCAACGAATCTGTTGAAGTACGCAACTTTCACCAACTCACCACG CTGCCCCCCCATCCCCCCGTCCCCCCCCCCTCCCAGCAACGCCTGCTCCG ACACCAGCTCCGGCTCTGACTCTGATGCCGACCCCGGTGCCCTTCCTGGC CGGAAACGCCAACGACTTCGTCAATGGCTCCACCAGCGCGGCCGACCCCG GTATGCTCCGGGGGCCCGCCAGCCTGGTGTTGCCGCTAGCAACCGCGACG GCCGCGTTCCTTGGCGCCCTGGCCTTCGGGGCGGCGCACCAGCACCAGTC TGCTCGAGGGGGGGCCGTGAGGAACTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5629:4976..6203+

>mRNA_Ecto-sp13_S_contig5629.15968.1 ID=mRNA_Ecto-sp13_S_contig5629.15968.1|Name=mRNA_Ecto-sp13_S_contig5629.15968.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5629:4976..6203+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGTCCCATCGACGTGCAGCAATGGGCTTCCTGGATACCAAGACGG
GCAAGCTTGCTGCTTGATGAATTGTGGCATGTGTGGCGGCGACGGATGTG
GATCTGTGAACGGAACTGCTGGTGCATCGGACTGCTGCCCTTCCACGATT
ATCAACTCCGCACGGGTATGCGGCGGCGACATCGTGGCTCCGTGCATCAT
CCCTGCAACGCCTGCTCCGACACCAGCTCCGGCTCTGACTCTGATGCCGA
CCCCGGTGCCCTTCCTGGCCGGAAACGCCAACGACTTCGTCAATGGCTCC
ACCAGCGCGGCCGACCCCGGTATGCTCCGGGGGCCCGCCAGCCTGGTGTT
GCCGCTAGCAACCGCGACGGCCGCGTTCCTTGGCGCCCTGGCCTTCGGGG
CGGCGCACCAGCACCAGTCTGCTCGAGGGGGGGCCGTGAGGAACTAG
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