mRNA_Ecto-sp13_S_contig5626.15966.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5626.15966.1
Unique NamemRNA_Ecto-sp13_S_contig5626.15966.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5626.15966.1 vs. uniprot
Match: H3H274_PHYRM (EF-hand domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H274_PHYRM)

HSP 1 Score: 55.5 bits (132), Expect = 4.280e-6
Identity = 39/113 (34.51%), Postives = 55/113 (48.67%), Query Frame = 1 
Query:    1 HEQEMLYPLELFAAVALQ-CHGLSREKAGFMFDMFDFEGQQEVSYDELAICISTVVGALSKVS---GP--CGLMDEKSVDKLADDAYVVAGSDASVSLSRPDFLKWVEKGLKI 321
            H   ++  LE   A+AL    G   EKAG +FD+FDF+    ++ DEL I I + V  LSK +   GP    L   + V +L    +V    D    L R  F+ WV++  KI
Sbjct:   13 HSSSIVNGLEFLTALALSTADGKLDEKAGAVFDIFDFDDSGAITRDELGILIKSAVRGLSKATKGLGPRLAALCPMREVAELTRQCFVHCDLDDEQDLPRARFILWVKQTPKI 125
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BLAST of mRNA_Ecto-sp13_S_contig5626.15966.1 vs. uniprot
Match: A0A8J5LYG4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5LYG4_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 7.460e-6
Identity = 39/113 (34.51%), Postives = 54/113 (47.79%), Query Frame = 1 
Query:    1 HEQEMLYPLELFAAVALQ-CHGLSREKAGFMFDMFDFEGQQEVSYDELAICISTVVGALSKVS---GP--CGLMDEKSVDKLADDAYVVAGSDASVSLSRPDFLKWVEKGLKI 321
            H   ++  LE   A+AL    G   EKAG +FD+FDF+    ++ DEL I I + V  LSK +   GP    L     V +L    +V    D    L R  F+ WV++  KI
Sbjct:   79 HSSTIVNGLEFLTALALTTADGKLEEKAGAVFDIFDFDDSGAITRDELGILIKSAVRGLSKATKGLGPKLAALCPMSEVAELTRQCFVHCDLDDEQDLPRSRFILWVKQTPKI 191
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BLAST of mRNA_Ecto-sp13_S_contig5626.15966.1 vs. uniprot
Match: A0A1V9ZDB2_9STRA (Regulator of chromosome condensation (RCC1) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZDB2_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 7.960e-6
Identity = 37/105 (35.24%), Postives = 54/105 (51.43%), Query Frame = 1 
Query:   25 LELFAAVALQ-CHGLSREKAGFMFDMFDFEGQQEVSYDELAICISTVVGALSKVSGPCG-----LMDEKSVDKLADDAYVVAGSDASVSLSRPDFLKWVEKGLKI 321
            LE  AA+A+    G   EKAGF+FD+FDF     V+ DEL I + + V  L+K++   G     L     ++ LA   +   G D +  L +  FL+WV +  KI
Sbjct:   89 LEFLAALAITGAFGKLLEKAGFVFDLFDFNQSGAVTRDELLILLKSSVRGLTKITRGLGPQLVRLCPMPQIEDLASLCFQDCGLDPTDDLRKELFLQWVRRTPKI 193
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BLAST of mRNA_Ecto-sp13_S_contig5626.15966.1 vs. uniprot
Match: A0A0W8DMV0_PHYNI (mRNA-capping enzyme n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DMV0_PHYNI)

HSP 1 Score: 53.9 bits (128), Expect = 1.450e-5
Identity = 39/113 (34.51%), Postives = 54/113 (47.79%), Query Frame = 1 
Query:    1 HEQEMLYPLELFAAVALQ-CHGLSREKAGFMFDMFDFEGQQEVSYDELAICISTVVGALSKVS---GP--CGLMDEKSVDKLADDAYVVAGSDASVSLSRPDFLKWVEKGLKI 321
            H   ++  LE   A+AL    G   EKAG +FD+FDF+    ++ DEL I I + V  LSK +   GP    L     V +L    +V    D    L R  F+ WV++  KI
Sbjct:   81 HSSTIVNGLEFLTALALTTADGKLDEKAGAVFDIFDFDDSGAITRDELGILIKSAVRGLSKATKGLGPRLAALCPMSEVAELTRQCFVHCDLDDEQDLPRTRFILWVKQTPKI 193
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BLAST of mRNA_Ecto-sp13_S_contig5626.15966.1 vs. uniprot
Match: W2Q6Y9_PHYPN (EF-hand domain-containing protein n=28 Tax=Phytophthora TaxID=4783 RepID=W2Q6Y9_PHYPN)

HSP 1 Score: 53.9 bits (128), Expect = 1.480e-5
Identity = 39/113 (34.51%), Postives = 54/113 (47.79%), Query Frame = 1 
Query:    1 HEQEMLYPLELFAAVALQ-CHGLSREKAGFMFDMFDFEGQQEVSYDELAICISTVVGALSKVS---GP--CGLMDEKSVDKLADDAYVVAGSDASVSLSRPDFLKWVEKGLKI 321
            H   ++  LE   A+AL    G   EKAG +FD+FDF+    ++ DEL I I + V  LSK +   GP    L     V +L    +V    D    L R  F+ WV++  KI
Sbjct:   81 HSSTIVNGLEFLTALALTTADGKLDEKAGAVFDIFDFDDSGAITRDELGILIKSAVRGLSKATKGLGPRLAALCPMSEVAELTRQCFVHCDLDDEQDLPRTRFILWVKQTPKI 193
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BLAST of mRNA_Ecto-sp13_S_contig5626.15966.1 vs. uniprot
Match: A0A3F2RTS5_9STRA (EF-hand domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RTS5_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.550e-5
Identity = 37/105 (35.24%), Postives = 52/105 (49.52%), Query Frame = 1 
Query:   25 LELFAAVALQC-HGLSREKAGFMFDMFDFEGQQEVSYDELAICISTVVGALSKVSGPCG-----LMDEKSVDKLADDAYVVAGSDASVSLSRPDFLKWVEKGLKI 321
            LE+  A+AL   +G   EKAG +FD+FDF+    ++ DEL I I + V  LSK +   G     L     V +L    +V    D    L R  F+ WV++  KI
Sbjct:   89 LEVLTALALTATNGKLEEKAGAVFDIFDFDDSGAITRDELGILIKSAVRGLSKATKGLGPRLAVLCPMSEVAELTRQCFVHCDLDDEQDLPRDRFVLWVKQTPKI 193
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BLAST of mRNA_Ecto-sp13_S_contig5626.15966.1 vs. uniprot
Match: A0A3R7HXZ4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HXZ4_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.790e-5
Identity = 37/105 (35.24%), Postives = 52/105 (49.52%), Query Frame = 1 
Query:   25 LELFAAVALQC-HGLSREKAGFMFDMFDFEGQQEVSYDELAICISTVVGALSKVSGPCG-----LMDEKSVDKLADDAYVVAGSDASVSLSRPDFLKWVEKGLKI 321
            LE+  A+AL   +G   EKAG +FD+FDF+    ++ DEL I I + V  LSK +   G     L     V +L    +V    D    L R  F+ WV++  KI
Sbjct:   89 LEVLTALALTATNGKLEEKAGAVFDIFDFDDSGAITRDELGILIKSAVRGLSKATKGLGPRLAVLCPMSEVAELTRQCFVHCDLDDEQDLPRDRFVLWVKQTPKI 193
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BLAST of mRNA_Ecto-sp13_S_contig5626.15966.1 vs. uniprot
Match: A0A7S3XPX3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPX3_HETAK)

HSP 1 Score: 52.0 bits (123), Expect = 3.680e-5
Identity = 27/90 (30.00%), Postives = 50/90 (55.56%), Query Frame = 1 
Query:   73 EKAGFMFDMFDFEGQQEVSYDELAICISTVVGALSKVSGPCGLMDEKSVDKLADDAYVVAGSDASVSLSRPDFLKWVEKGLKIDLAADVT 342
            +K+  +FD FDFEG+ ++S DE+ IC+ +V+ A+S ++G      ++ +++L  +A+     DA   + +  F KW     K+D     T
Sbjct:   74 QKSEAIFDAFDFEGEGDISLDEMTICLLSVLRAVSVMTGRESEPTDQGMEELCLEAFGQFQLDAQDYIQKGQFAKWAAS--KVDATTSAT 161
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BLAST of mRNA_Ecto-sp13_S_contig5626.15966.1 vs. uniprot
Match: D0N829_PHYIT (Regulator of chromosome condensation (RCC1), putative n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0N829_PHYIT)

HSP 1 Score: 52.0 bits (123), Expect = 6.840e-5
Identity = 36/113 (31.86%), Postives = 52/113 (46.02%), Query Frame = 1 
Query:    1 HEQEMLYPLELFAAVALQ-CHGLSREKAGFMFDMFDFEGQQEVSYDELAICISTVVGALSKVSGPCG-----LMDEKSVDKLADDAYVVAGSDASVSLSRPDFLKWVEKGLKI 321
            H   ++  LE   A+AL    G   EKAG +FD+FDF+    ++ DEL I I + V  LSK +   G     L     V +L    +     D    L R  ++ WV++  KI
Sbjct:   81 HSSTVVNGLEFLTALALTTADGKLEEKAGAVFDIFDFDASGAITRDELGILIKSAVRGLSKATKGLGPRLATLCPMSEVAELTRQCFAHCDLDDEQDLPRSRYILWVKQTPKI 193
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5626.15966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
H3H274_PHYRM4.280e-634.51EF-hand domain-containing protein n=1 Tax=Phytopht... [more]
A0A8J5LYG4_9STRA7.460e-634.51Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A1V9ZDB2_9STRA7.960e-635.24Regulator of chromosome condensation (RCC1) n=1 Ta... [more]
A0A0W8DMV0_PHYNI1.450e-534.51mRNA-capping enzyme n=1 Tax=Phytophthora nicotiana... [more]
W2Q6Y9_PHYPN1.480e-534.51EF-hand domain-containing protein n=28 Tax=Phytoph... [more]
A0A3F2RTS5_9STRA2.550e-535.24EF-hand domain-containing protein n=1 Tax=Phytopht... [more]
A0A3R7HXZ4_9STRA2.790e-535.24Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A7S3XPX3_HETAK3.680e-530.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D0N829_PHYIT6.840e-531.86Regulator of chromosome condensation (RCC1), putat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5626contigEcto-sp13_S_contig5626:4131..6084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size441
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_005410.1
Cds size429
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463780.0615473-CDS-Ecto-sp13_S_contig5626:4130..43141681463780.0615473-CDS-Ecto-sp13_S_contig5626:4130..4314Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5626 4131..4314 -
1681463780.0709865-CDS-Ecto-sp13_S_contig5626:5044..51211681463780.0709865-CDS-Ecto-sp13_S_contig5626:5044..5121Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5626 5045..5121 -
1681463780.0820866-CDS-Ecto-sp13_S_contig5626:5437..55461681463780.0820866-CDS-Ecto-sp13_S_contig5626:5437..5546Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5626 5438..5546 -
1681463780.0923755-CDS-Ecto-sp13_S_contig5626:6013..60721681463780.0923755-CDS-Ecto-sp13_S_contig5626:6013..6072Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5626 6014..6072 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463780.102265-UTR-Ecto-sp13_S_contig5626:6072..60841681463780.102265-UTR-Ecto-sp13_S_contig5626:6072..6084Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5626 6073..6084 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5626.15966.1prot_Ecto-sp13_S_contig5626.15966.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5626 4131..6072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5626.15966.1

>prot_Ecto-sp13_S_contig5626.15966.1 ID=prot_Ecto-sp13_S_contig5626.15966.1|Name=mRNA_Ecto-sp13_S_contig5626.15966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
MLYPLELFAAVALQCHGLSREKAGFMFDMFDFEGQQEVSYDELAICISTV
VGALSKVSGPCGLMDEKSVDKLADDAYVVAGSDASVSLSRPDFLKWVEKG
LKIDLAADVTLEDLGKALGVWSSEDHARLQQLQREREQREREQ
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mRNA from alignment at Ecto-sp13_S_contig5626:4131..6084-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5626.15966.1 ID=mRNA_Ecto-sp13_S_contig5626.15966.1|Name=mRNA_Ecto-sp13_S_contig5626.15966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1954bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5626:4131..6084- (Ectocarpus species13 EcNAP12_S_4_19m)
CACGAGCAGGAGATGCTCTACCCTCTGGAACTGTTTGCCGCCGTTGCTCT
CCAGTGCCATGGCTTGTCTAGGTGTGGTGTATCTACAATTTGCAGCTGCC
CAGTTTGATTGTGTAAGAATCCGAGCTATTTCCATGCCCATGTTGGTCCC
TGTCGCCCGGAAGGTCGGAGGCTCGACTGGTGCATTTCCTTAATAGCCTC
CCCGTGGATCAGGGTTCATTTCTGAAGTCGTTCTTTTACAATCAACACTC
TCTGTCTCCATTGATCGGGCCGACAAGATAAGGGCATCCGCGTGATAAAA
AAAGAGGGACTACCACGGTGGCAATAACTCTGTCTGATATGCGAGGTGCA
TTGCTGAAGCTAGGCGTATATCGCTGGTTGTCCGTGCGACGTAAACGCGA
AACTCCACTTAACCCGGCCGCAGCCACCCATAGTCTATAAATGGAGTTCA
CGCCCAAGGAGGGTATGTGCGGTTGAAGTGTATTACAGGGTCGGCGTATC
GTTTCATGCTCCACGTCTCGTTCGTTCGCGACCAACAGAGAAAAGGCGGG
GTTTATGTTCGACATGTTTGACTTTGAAGGCCAACAAGAGGTTTCGTACG
ACGAGTTGGCCATCTGCATCTCGACCGTCGTGGGAGCACTTTCGAAGGTA
GGGGTCGAAACGAACAACCACAAAATGGCAAAACGTGACACCGAAGAAGA
AACGTCCATCGCGCCTCCCGCGGCACCCGTTCGGTTTTGCGTGCGGTGTT
GGACGCGAAATTCTCAGCAAGAACGTTCGATATAACACTACCCACCATTA
ACGGCACCAAAGACGAAGGCGATCCGAAGGGTGTCCTAAACCAATCCAAT
CCAACCGACGACATGCTGTATGCAAATGATGCCCGCCTAGACAAGACCCG
TTTGGACCCGTTGACGATACATGTCCTGTTTGCACCACGCACCGCACACA
CGCCCTTTGAAAGGTCTCTGGACCCTGCGGTTTGATGGACGAAAAGAGCG
TCGACAAGCTGGCCGACGATGCCTACGTGGTCGCAGGAAGGTAGGTGCAC
ATTAGATGCGCATCAACAACTGCAAACACAAACACCTTGTTCATTTTTCT
TCGTGACATCTCGTGTATCCCCCTCATCGCTGTCTGTTCCCCGCAAGCTA
CGCAGTGTTGAGGTACGCATGGTGGGTGTGATGCCTGAAGCTGGGGGAGA
AGGGTGGACGGGGAATAAGCCACCCATGTAGATGCCATAGAATCAATGAC
ACTTTTGTCGTGGTGCCAACGCTCCGGTAGGGCTACTGCAGGTTTTGTGC
TGAGCGAAAACTCGTCGTTGTTTGTGTAGATTCGGGCGTCTACGAAAATC
CTAAAACGACATTGTCGTTCTAACAGTTGTGACGGCTTCAATGGCGCGAT
GGCTGTGCGTGTGCAAATCGGAACCTCAGCTCCGTAGACAAGAGTTCATG
CTTGTCTGCACGTTGCCCAGACTGACGAACGGCCGCGATTGCACCTCTCT
CGCAAGAGGTGGACTATTTCCACCTCCACTGGCAGACGGTCGATTCGTTT
TAGGCGACAATTGCTATCGAGGTGTTCGAGTGGATGGGGACAGAGATGCT
ACGACGTGAGCTTTCGCGCTGTCATCCTAGAAGTGTTGTAAGAAAGGCTC
AACCAACTCGTCCTGCTAGCTCGTCTGAAGCCGCCACTACTCGCATACCA
GACAGCGCTTTCTAGATGCCTCGCCAACTAAAAGCCTTGCCGCTCCGAAA
TAATACGAACGAATACGCAGCGATGCCAGCGTCTCTCTGTCAAGACCAGA
TTTCCTCAAATGGGTAGAGAAGGGTCTCAAGATAGACCTCGCGGCCGACG
TTACGCTGGAGGACCTCGGCAAGGCTCTGGGGGTGTGGTCGAGCGAAGAT
CACGCACGGCTGCAGCAGTTGCAACGGGAGCGGGAGCAGCGGGAGCGGGA
GCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5626:4131..6084-

>mRNA_Ecto-sp13_S_contig5626.15966.1 ID=mRNA_Ecto-sp13_S_contig5626.15966.1|Name=mRNA_Ecto-sp13_S_contig5626.15966.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5626:4131..6084- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTCTACCCTCTGGAACTGTTTGCCGCCGTTGCTCTCCAGTGCCATGG
CTTGTCTAGAGAAAAGGCGGGGTTTATGTTCGACATGTTTGACTTTGAAG
GCCAACAAGAGGTTTCGTACGACGAGTTGGCCATCTGCATCTCGACCGTC
GTGGGAGCACTTTCGAAGGTCTCTGGACCCTGCGGTTTGATGGACGAAAA
GAGCGTCGACAAGCTGGCCGACGATGCCTACGTGGTCGCAGGAAGCGATG
CCAGCGTCTCTCTGTCAAGACCAGATTTCCTCAAATGGGTAGAGAAGGGT
CTCAAGATAGACCTCGCGGCCGACGTTACGCTGGAGGACCTCGGCAAGGC
TCTGGGGGTGTGGTCGAGCGAAGATCACGCACGGCTGCAGCAGTTGCAAC
GGGAGCGGGAGCAGCGGGAGCGGGAGCAG
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