mRNA_Ecto-sp13_S_contig5620.15960.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5620.15960.1
Unique NamemRNA_Ecto-sp13_S_contig5620.15960.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5620.15960.1 vs. uniprot
Match: D7FI79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI79_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 1.320e-52
Identity = 95/103 (92.23%), Postives = 98/103 (95.15%), Query Frame = 1 
Query:   19 RGGQDALQVVRDVFVGAADGDDLHHLDLLLRLMSEAAVRSGPSGGAEAGGGIGCGSKNPIERRLNAHIGLMRRLLKAAPPGLDYKALIGDDPLADPLADPEAG 327
            RG QDALQVVRD+FVGAADG DLHHLDLLLRLM EAA RSGPSGGAEAGGG+G G+KNPIERRLNAHIGLMRRLLKAAPPGLDYKALIGDDPLADPLADPEAG
Sbjct: 2346 RGRQDALQVVRDLFVGAADGADLHHLDLLLRLMYEAAARSGPSGGAEAGGGVGGGAKNPIERRLNAHIGLMRRLLKAAPPGLDYKALIGDDPLADPLADPEAG 2448
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BLAST of mRNA_Ecto-sp13_S_contig5620.15960.1 vs. uniprot
Match: A0A6H5JKW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW6_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 4.120e-49
Identity = 104/133 (78.20%), Postives = 106/133 (79.70%), Query Frame = 1 
Query:   19 RGGQDALQVVRDVFVGAADGDDLHHLDLLLRLMSEAAVRSGPSGGAEAGGGIGCGSKNPIERRLNAHIGLMRRLLKAAPPGLDYKALIGDDPLADPLADPEAGAXXXXXXXENSXXXXXXXXXXXXXXAGGAA 417
            RGGQDALQVVRDVFVGAA GDDLHHLDLLLRLMSEA+ RSGPSGGAEAGG IG G+KNPIERRLNAHIGLMRRLLKAAPPGLDYKALIGDDPLAD       G XXXXXXX NS              AGGAA
Sbjct: 1148 RGGQDALQVVRDVFVGAAGGDDLHHLDLLLRLMSEASARSGPSGGAEAGGAIGGGAKNPIERRLNAHIGLMRRLLKAAPPGLDYKALIGDDPLADXXXXXXXGXXXXXXXXGNSSAPSSNDSTSTRSGAGGAA 1280
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5620.15960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI79_ECTSI1.320e-5292.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKW6_9PHAE4.120e-4978.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5620contigEcto-sp13_S_contig5620:6340..6757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score188.3
Seed ortholog evalue2.3e-45
Seed eggNOG ortholog2880.D7FI79
Model size418
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2D0V1@1,2SFKQ@2759
Cds size417
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463779.6408138-CDS-Ecto-sp13_S_contig5620:6339..67561681463779.6408138-CDS-Ecto-sp13_S_contig5620:6339..6756Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5620 6340..6756 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5620.15960.1prot_Ecto-sp13_S_contig5620.15960.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5620 6340..6756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5620.15960.1

>prot_Ecto-sp13_S_contig5620.15960.1 ID=prot_Ecto-sp13_S_contig5620.15960.1|Name=mRNA_Ecto-sp13_S_contig5620.15960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp
RGDSGGRGGQDALQVVRDVFVGAADGDDLHHLDLLLRLMSEAAVRSGPSG
GAEAGGGIGCGSKNPIERRLNAHIGLMRRLLKAAPPGLDYKALIGDDPLA
DPLADPEAGAAAAAAFAENSSAPSSNNSTSSSSGAGGAA
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mRNA from alignment at Ecto-sp13_S_contig5620:6340..6757+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5620.15960.1 ID=mRNA_Ecto-sp13_S_contig5620.15960.1|Name=mRNA_Ecto-sp13_S_contig5620.15960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=418bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5620:6340..6757+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGGCGACAGCGGCGGCCGAGGAGGGCAGGACGCTCTGCAGGTCGTGCG
CGACGTGTTCGTCGGTGCCGCGGACGGGGACGACCTGCACCACCTCGATC
TTCTACTCCGGTTGATGTCCGAAGCGGCGGTGAGGTCTGGGCCGTCGGGC
GGCGCCGAGGCGGGCGGCGGCATCGGCTGCGGTTCGAAGAATCCTATCGA
GAGGCGGCTCAACGCGCACATCGGGCTCATGAGACGGCTCCTGAAGGCCG
CACCGCCAGGGCTCGACTACAAAGCTCTCATCGGGGACGATCCCCTGGCG
GACCCGCTCGCCGACCCCGAAGCGGGGGCCGCCGCCGCCGCCGCGTTCGC
CGAAAATTCTTCGGCGCCGTCCAGCAACAACAGCACCAGCAGTAGCAGCG
GCGCAGGCGGCGCCGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5620:6340..6757+

>mRNA_Ecto-sp13_S_contig5620.15960.1 ID=mRNA_Ecto-sp13_S_contig5620.15960.1|Name=mRNA_Ecto-sp13_S_contig5620.15960.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5620:6340..6757+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGGCGACAGCGGCGGCCGAGGAGGGCAGGACGCTCTGCAGGTCGTGCG
CGACGTGTTCGTCGGTGCCGCGGACGGGGACGACCTGCACCACCTCGATC
TTCTACTCCGGTTGATGTCCGAAGCGGCGGTGAGGTCTGGGCCGTCGGGC
GGCGCCGAGGCGGGCGGCGGCATCGGCTGCGGTTCGAAGAATCCTATCGA
GAGGCGGCTCAACGCGCACATCGGGCTCATGAGACGGCTCCTGAAGGCCG
CACCGCCAGGGCTCGACTACAAAGCTCTCATCGGGGACGATCCCCTGGCG
GACCCGCTCGCCGACCCCGAAGCGGGGGCCGCCGCCGCCGCCGCGTTCGC
CGAAAATTCTTCGGCGCCGTCCAGCAACAACAGCACCAGCAGTAGCAGCG
GCGCAGGCGGCGCCGCC
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