mRNA_Ecto-sp13_S_contig5618.15953.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5618.15953.1
Unique NamemRNA_Ecto-sp13_S_contig5618.15953.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5618.15953.1 vs. uniprot
Match: D7FTF3_ECTSI (Contains domains for prephenate dehydrogenase and nucleoside-diphosphate-sugar epimerases n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF3_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 3.040e-72
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1
Query:   10 KIIGEKWGSKHPEAKMYGETRSYTRHETFMPPGMTHVMRKNREEEGVKCPNVVFCANPGGNKDYAREVFTAMEDVWDGTGMFVFTSSGSVYGEKDGGVVTEDSPI 324
            KIIGEKWGSKHPEAKMYGETRSYTRHETFMPPGMTHVMRKNREEEGVKCPNVVFCANPGGNKDYAREVFTAMEDVWDGTGMFVFTSSGSVYGEKDGGVVTEDSPI
Sbjct:   18 KIIGEKWGSKHPEAKMYGETRSYTRHETFMPPGMTHVMRKNREEEGVKCPNVVFCANPGGNKDYAREVFTAMEDVWDGTGMFVFTSSGSVYGEKDGGVVTEDSPI 122          
BLAST of mRNA_Ecto-sp13_S_contig5618.15953.1 vs. uniprot
Match: A0A6H5JFX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFX5_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 2.540e-70
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 1
Query:   10 KIIGEKWGSKHPEAKMYGETRSYTRHETFMPPGMTHVMRKNREEEGVKCPNVVFCANPGGNKDYAREVFTAMEDVWDGTGMFVFTSSGSVYGEKDGGVVTEDSPI 324
            KIIGEKWGSKHPEAKMYGETRSYTRHETFMPPGMTHVMRKNREEEGVKCPNVVFCANPGGNKDYAREVFTAMEDVWDGTGMFVFTSSGSVY EKDGGVVTEDSPI
Sbjct:   88 KIIGEKWGSKHPEAKMYGETRSYTRHETFMPPGMTHVMRKNREEEGVKCPNVVFCANPGGNKDYAREVFTAMEDVWDGTGMFVFTSSGSVYAEKDGGVVTEDSPI 192          
BLAST of mRNA_Ecto-sp13_S_contig5618.15953.1 vs. uniprot
Match: A0A835ZQB3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQB3_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.180e-27
Identity = 59/107 (55.14%), Postives = 71/107 (66.36%), Query Frame = 1
Query:   10 KIIGEKWGSKHPEAKMYGETRSYTRHETFMPPGMTHVMRKNREEEGVKCPNVVFCANPGGNKDYAREVFTAMEDVW--DGTGMFVFTSSGSVYGEKDGGVVTEDSPI 324
            K IG +W   HP+AK++GETRS  +HE     GM  V+R +R  +  K  NVVFCA P GN DYA EV  A  D+W  +GTG FVFTSSG VY EK+GGVV E SP+
Sbjct:   48 KRIGNQWQQLHPDAKVFGETRSEAKHEDLRAEGMEPVLRASRGVQ--KYTNVVFCAAPSGNDDYAGEVTAAARDLWNAEGTGCFVFTSSGGVYEEKEGGVVREVSPV 152          
BLAST of mRNA_Ecto-sp13_S_contig5618.15953.1 vs. uniprot
Match: A0A6V1QQS9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QQS9_HETAK)

HSP 1 Score: 88.6 bits (218), Expect = 9.180e-19
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 1
Query:   10 KIIGEKWGSKHPEAKMYGETRSYTRHETFMPPGMTHVMRKNREEEGVK-CPNVVFCANPGGNKDYAREVFTAMEDVWDGTGMFVFTSSGSVYGEKDGGVVTEDSP 321
            +++ ++W  K+P + +Y ETR+  +H      G+  ++R  RE    K    VVFCA P GN DY  E+ TA+  +W G G FVFTSSG ++ E+ GG+VT DSP
Sbjct:   70 QLVAKEWQLKYPGSTVYAETRTDAKHSNLKDMGVVPLLRSERENHPFKEWKTVVFCAAPKGNDDYPGELKTAIS-LWTGDGHFVFTSSGGIFAEEAGGIVTSDSP 173          
BLAST of mRNA_Ecto-sp13_S_contig5618.15953.1 vs. uniprot
Match: L1JYJ7_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JYJ7_GUITC)

HSP 1 Score: 83.6 bits (205), Expect = 3.340e-17
Identity = 46/108 (42.59%), Postives = 60/108 (55.56%), Query Frame = 1
Query:    1 VCSKIIGEKWGSKHPEAKMYGETRSYTRHETFMPPGMTHVMRKNREEEGVKCPNVVFCANPGGNKDYAREVFTAMEDVWDGTGMFVFTSSGSVYGEKDGGVVTEDSPI 324
                ++ ++   K PEA++  ETR+  +HE     G     R   +    K  NVVFCA PGGN +YA EV  A+ ++W G G FVFTSSG VY E  GG V E SP+
Sbjct:   14 TLGSLLIQQHKEKFPEARVVAETRTDAKHEALKSLGAE--ARTVSQAGDEKFANVVFCAAPGGNDNYAAEVDRAL-NMWSGAGKFVFTSSGGVYAESSGGTVNEQSPV 118          
BLAST of mRNA_Ecto-sp13_S_contig5618.15953.1 vs. uniprot
Match: A0A4D9D5S6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5S6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.700e-13
Identity = 43/114 (37.72%), Postives = 61/114 (53.51%), Query Frame = 1
Query:    1 VCSKIIGEKWGSKHP-EAKMYGETRSYTRHETFMPPGMTHVMRKNRE----EEGVKC-PNVVFCANPGGNKDYAREVFTAMEDVWDGTGMFVFTSSGSVYGEKDGGVVTEDSPI 324
               + +G+ W      +A +YGET +  RH+     G+   MR  R     E+G +   +VVFC  P  N+DY  EV  A++ +W G G FVFTSSG VY E +GG V E + +
Sbjct:    8 TLGRFLGQSWRESFGNDAIIYGETSTDNRHDDLRSIGVKPFMRSERAGTLAEQGHEAFSHVVFCVPPSKNQDYVEEVKEALK-LWTGKGGFVFTSSGGVYAEDEGGTVNESAAL 120          
BLAST of mRNA_Ecto-sp13_S_contig5618.15953.1 vs. uniprot
Match: A0A1Z5JUB8_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JUB8_FISSO)

HSP 1 Score: 72.8 bits (177), Expect = 5.450e-13
Identity = 44/115 (38.26%), Postives = 66/115 (57.39%), Query Frame = 1
Query:    1 VCSKIIGEKWGSKHPEAKMYGETRSYTRHETFMPP-GMTHVMRKN---REEEGVKCPNVVFCANPGGNKDYAREVFTAMEDVWDGT---GMFVFTSSGSVYGEKDGGVVTEDSPI 324
            +C +I+       +PEAK+ G T++  RHE  +   G TH  R +    ++   +  NVVFCA P G +DYA  V   +++VW G    G+F+FTSSG +YG  +   +TEDSP+
Sbjct:   37 LCRQIL-----DAYPEAKVTGITKTTNRHEEILNHVGGTHNGRFHLCTSDQVNQRYENVVFCAPPSGFEDYAGAVKDVIDNVWSGPENGGVFIFTSSGGIYGAGNRQSITEDSPV 146          
BLAST of mRNA_Ecto-sp13_S_contig5618.15953.1 vs. uniprot
Match: W7U605_9STRA (Rossmann-fold nad-binding domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U605_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.140e-13
Identity = 43/114 (37.72%), Postives = 61/114 (53.51%), Query Frame = 1
Query:    1 VCSKIIGEKWGSKHP-EAKMYGETRSYTRHETFMPPGMTHVMRKNR----EEEGVKC-PNVVFCANPGGNKDYAREVFTAMEDVWDGTGMFVFTSSGSVYGEKDGGVVTEDSPI 324
               + +G+ W      +A +YGET +  RH+     G+   MR  R     E+G +   +VVFC  P  N+DY  EV  A++ +W G G FVFTSSG VY E +GG V E + +
Sbjct:   96 TLGRFLGQSWRESFGNDAIIYGETSTDNRHDDLRSIGVKPFMRSERVGTLAEQGHEAFSHVVFCVPPSKNQDYVEEVKEALK-LWTGKGGFVFTSSGGVYAEDEGGTVNESAAL 208          
BLAST of mRNA_Ecto-sp13_S_contig5618.15953.1 vs. uniprot
Match: A0A1Z5JJ01_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJ01_FISSO)

HSP 1 Score: 69.3 bits (168), Expect = 1.020e-11
Identity = 41/115 (35.65%), Postives = 66/115 (57.39%), Query Frame = 1
Query:    1 VCSKIIGEKWGSKHPEAKMYGETRSYTRHETFMPP-GMTHVMRKN---REEEGVKCPNVVFCANPGGNKDYAREVFTAMEDVWDGT---GMFVFTSSGSVYGEKDGGVVTEDSPI 324
            +C +I+       +P+A++ G T++  RHE  +   G TH  R +    ++   K  NV+FCA P G +DYA  V   +++VW G    G+F+FTSSG +YG  +   +TE+SP+
Sbjct:   37 LCRQIL-----DAYPKAEVTGITKTTNRHEEILSHVGGTHSGRFHLCTSDQVNQKYENVIFCAPPSGFEDYAGAVKEVIDNVWSGPENKGVFIFTSSGGIYGAGNRQSITENSPV 146          
BLAST of mRNA_Ecto-sp13_S_contig5618.15953.1 vs. uniprot
Match: A0A8J6CK03_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CK03_DIALT)

HSP 1 Score: 62.4 bits (150), Expect = 3.130e-9
Identity = 37/106 (34.91%), Postives = 51/106 (48.11%), Query Frame = 1
Query:    1 VCSKIIGEKWGSKHPEAKMYGETRSYTRHETFMPPGMTHVMRKNREEEGVKCPNVVFCANPGGNKDYAREVFTAMEDVWDGTGMFVFTSSGSVYGEKDGGVVTEDS 318
                +  ++W    PEA++ GETRS TRH++    G+   +R     E    PNV+ C  PGGN D+  EV +A+   WD +G   FTS            V EDS
Sbjct:   38 TLGSLAAKQWRESFPEARIVGETRSDTRHDSLRAAGIEPRLRGTGAMEAF--PNVLICFAPGGNDDFPSEVKSALA-AWDRSGGCAFTSXXXXXXXXXXXXVDEDS 140          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5618.15953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FTF3_ECTSI3.040e-72100.00Contains domains for prephenate dehydrogenase and ... [more]
A0A6H5JFX5_9PHAE2.540e-7099.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZQB3_9STRA1.180e-2755.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1QQS9_HETAK9.180e-1941.90Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
L1JYJ7_GUITC3.340e-1742.59Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A4D9D5S6_9STRA3.700e-1337.72Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A1Z5JUB8_FISSO5.450e-1338.26Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
W7U605_9STRA6.140e-1337.72Rossmann-fold nad-binding domain-containing protei... [more]
A0A1Z5JJ01_FISSO1.020e-1135.65Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A8J6CK03_DIALT3.130e-934.91Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5618contigEcto-sp13_S_contig5618:5..705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score226.1
Seed ortholog evalue7.9e-57
Seed eggNOG ortholog2880.D7FTF3
Model size324
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs28KAS@1,2QSRK@2759
Cds size324
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463779.151509-CDS-Ecto-sp13_S_contig5618:4..1411681463779.151509-CDS-Ecto-sp13_S_contig5618:4..141Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5618 5..141 -
1681463779.1618583-CDS-Ecto-sp13_S_contig5618:518..7051681463779.1618583-CDS-Ecto-sp13_S_contig5618:518..705Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5618 519..705 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5618.15953.1prot_Ecto-sp13_S_contig5618.15953.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5618 5..705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5618.15953.1

>prot_Ecto-sp13_S_contig5618.15953.1 ID=prot_Ecto-sp13_S_contig5618.15953.1|Name=mRNA_Ecto-sp13_S_contig5618.15953.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
VCSKIIGEKWGSKHPEAKMYGETRSYTRHETFMPPGMTHVMRKNREEEGV
KCPNVVFCANPGGNKDYAREVFTAMEDVWDGTGMFVFTSSGSVYGEKDGG
VVTEDSPI
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mRNA from alignment at Ecto-sp13_S_contig5618:5..705-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5618.15953.1 ID=mRNA_Ecto-sp13_S_contig5618.15953.1|Name=mRNA_Ecto-sp13_S_contig5618.15953.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=701bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5618:5..705- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTGCAGCAAGATCATCGGGGAGAAGTGGGGCTCGAAGCATCCCGAGGC GAAGATGTACGGTGAGACCCGCTCGTACACGCGGCACGAGACGTTCATGC CGCCGGGGATGACCCACGTCATGCGAAAGAACAGGGAGGAGGAGGGGGTC AAGTGCCCCAACGTGGTGTTCTGTGCCAACCCCGGCGGTGAGTGCTGGAG CGGCAGCCGGGGTACGGAGATGGATTGCGTGTTGGCTCGGCGTGCGACTC TCATTCTCCCCCCACCCCCACCCCCTCGCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCGCTCGCTCCCTCTTTCTCCCTCCCGCCTT CTCTCTCTCCCCCTCTCTCGCTCTCGTTCTCTTTATGCGTTTCTGGCTGG TAGGCCTCTGCTGACCCTTACTCCGAGGAAACGAATTGTCATCGTTGTCG TAGTCTCTGCCATGACTAGCCGCGTACATTTCCACAGCTGATGCCACCCG CGAGCGATAATTTTTACGCTCCAGACCTTTTTGATTCACCCAAGACCTGC TCCGGTACCACCAGGAAACAAGGACTACGCGCGAGAAGTTTTCACGGCGA TGGAGGACGTTTGGGACGGAACGGGGATGTTCGTTTTCACCTCCTCGGGC AGCGTGTACGGGGAGAAGGACGGAGGAGTGGTCACCGAAGACTCGCCTAT C
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5618:5..705-

>mRNA_Ecto-sp13_S_contig5618.15953.1 ID=mRNA_Ecto-sp13_S_contig5618.15953.1|Name=mRNA_Ecto-sp13_S_contig5618.15953.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5618:5..705- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTGCAGCAAGATCATCGGGGAGAAGTGGGGCTCGAAGCATCCCGAGGC
GAAGATGTACGGTGAGACCCGCTCGTACACGCGGCACGAGACGTTCATGC
CGCCGGGGATGACCCACGTCATGCGAAAGAACAGGGAGGAGGAGGGGGTC
AAGTGCCCCAACGTGGTGTTCTGTGCCAACCCCGGCGGAAACAAGGACTA
CGCGCGAGAAGTTTTCACGGCGATGGAGGACGTTTGGGACGGAACGGGGA
TGTTCGTTTTCACCTCCTCGGGCAGCGTGTACGGGGAGAAGGACGGAGGA
GTGGTCACCGAAGACTCGCCTATC
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