mRNA_Ecto-sp13_S_contig5614.15950.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5614.15950.1
Unique NamemRNA_Ecto-sp13_S_contig5614.15950.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5614.15950.1 vs. uniprot
Match: D8LQH2_ECTSI (CRAL-TRIO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQH2_ECTSI)

HSP 1 Score: 796 bits (2056), Expect = 9.870e-288
Identity = 403/417 (96.64%), Postives = 405/417 (97.12%), Query Frame = 2 
Query:   68 MGFKDAMGAISSLIIIGAASNACSAHVVGSRKHASAAAEACCLNSKRLRPNRHLTSSRRSPSLTTDELLTSRSLFLIRGGASSEPFDESHPQSRWWRSRKRWAKRKAAELAAKEAKESRTHAHTKHVILNLLRRLKRWIGVVVDFTTLKRLRLLRQARRGSWQHGGPIPVRYRGVLQELRNEVVAKPGLERRAKKVHHELDTVALGRFLEAAFWSLEHDGKRVSDFIEESIAWREKIGADRLRKEDVVDQGCRGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNSKLMIYNLERAIRLMPRNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAKYIHPSQLLSFAGGKSPWQYDPAVYFSSDAASL 1318
            MGFKDAMGAISSLIIIGAASNACSA VVGSRKHASAAAEACC NSKRLRPNRHLT SRRS SL TDELLTSRSLFLIRGG SSE FDES+PQSRWWRSRKRWAKRKAAELAAKEAKESRTHAH KHVILNLLR LKRWIGVVVDFTTLKRLRLLRQARRGSWQHGGPIPVRYRGVLQELRNEV AKPGLERRAKKVHHELDTVA GRFLEAAFW+LEHDGKRVSDFIEESIAWREKIGADRLRKEDVVDQGCRGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNSKLMIYNLERAIRLMPRNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAKYIHPSQLLSFAGGKS WQYDPAVYFSSDAASL
Sbjct:    1 MGFKDAMGAISSLIIIGAASNACSARVVGSRKHASAAAEACCWNSKRLRPNRHLTGSRRSLSLATDELLTSRSLFLIRGGTSSELFDESNPQSRWWRSRKRWAKRKAAELAAKEAKESRTHAHPKHVILNLLRLLKRWIGVVVDFTTLKRLRLLRQARRGSWQHGGPIPVRYRGVLQELRNEVAAKPGLERRAKKVHHELDTVAFGRFLEAAFWALEHDGKRVSDFIEESIAWREKIGADRLRKEDVVDQGCRGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNSKLMIYNLERAIRLMPRNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAKYIHPSQLLSFAGGKSTWQYDPAVYFSSDAASL 417
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BLAST of mRNA_Ecto-sp13_S_contig5614.15950.1 vs. uniprot
Match: A0A835ZL56_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL56_9STRA)

HSP 1 Score: 171 bits (433), Expect = 4.910e-46
Identity = 95/225 (42.22%), Postives = 126/225 (56.00%), Query Frame = 2 
Query:  680 LGRFLEAAFWSLEHDGKRVSDFIEESIAWREKIGAD---------RLRKEDVVDQGC----RGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNS-----KLMIYNLERAIRLMPRNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAKYIHPSQLLSFAGGKSPWQYDPAVYFS 1300
            L RF+E AFW+LEH G  VS  IEE++AWRE +GA          R R  D+V         GAI+V G D   RP+++ R    G + G G S     +  +Y +ERA R   R    YTIV DC G GL  LPP+ +++ MF +LS HYPMRLGH+L  N   SV LCW+V SP++  RTK K+           A+Y+ P++L    GG S ++YD A YF+
Sbjct:    2 LVRFIEGAFWNLEHKGVPVSALIEETVAWRESVGAHAITPASLGARARGRDIVGPLAPALRAGAIVVHGRDRDGRPIMHVRL---GALFGKGYSAEQCLRYAVYTVERAWRARARGVEAYTIVADCRGFGLTHLPPLPFLRAMFGMLSRHYPMRLGHILLCNASASVHLCWRVCSPIVPPRTKDKIVFAREGDRALVARYVAPAELPRALGGASAYEYDAARYFA 223
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BLAST of mRNA_Ecto-sp13_S_contig5614.15950.1 vs. uniprot
Match: D7FQ39_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ39_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.790e-32
Identity = 66/205 (32.20%), Postives = 107/205 (52.20%), Query Frame = 2 
Query:  686 RFLEAAFWSLEHDGKRVSDFIEESIAWREKIGADRLRKEDVVDQGCRGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNSKLMIYNLERAIRLMPRNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAK-YIHPSQL-LSFAGGKSPWQYDPAVY 1294
            R+LE A+W++E  G+ + D +  ++ WRE      L    V ++   G + V+G D  +RP++++RP L+   + +    L+ + LERA   +P+   Q+ +V DC G G  + PP+  +K  F  +  HYPMRLG+V+  N G  +   WK++S +L+ RTK K+  +       T    I PS L  S  GG   + Y    Y
Sbjct:    3 RYLEMAYWTMESMGQPLPDAVASTVRWREDATPHLLTDNQVAEEAKYGKMYVRGLDRQQRPIIHYRPGLEKSFDTEKGLNLLFHTLERAKGSLPKGQTQFAVVADCSGFGPSKTPPLPMLKTAFITMQRHYPMRLGYVVIVNAGGPITFVWKLISTVLEERTKEKIAFLSKKEAEATLTGLIDPSALPASLPGGLDDFTYSNEEY 207
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BLAST of mRNA_Ecto-sp13_S_contig5614.15950.1 vs. uniprot
Match: A0A4D9CSV1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSV1_9STRA)

HSP 1 Score: 132 bits (332), Expect = 7.210e-29
Identity = 70/229 (30.57%), Postives = 115/229 (50.22%), Query Frame = 2 
Query:  626 PGLERRAKKVHHELDTVALGRFLEAAFWSLEHDGKRVSDFIEESIAWREKIGADRLRKEDVVDQGCRGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNSKLMIYNLERAIRLMPRNSWQ-YTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAKY----IHPSQLLSFAGGKSPWQYDPAVYF 1297
            PG+  R   V   +D   + R+  A  W     GK   D +  +I WRE+     L  +DV+ Q   G + V G D   RP++YF PA       +   + ++Y LERA+ L  ++  + Y+ +IDC G  L  +PP+  +K+ F LL HHYP R+G ++F + G +    WK+++PL+   T+ K+  +P+   G+  K     + P +L    GG   + ++   YF
Sbjct:    2 PGIPERGLAVRMAVDRECVARYFVAGQWKPSLRGKTTVDHVLRTIQWRERERVAHLGPDDVLAQARDGYLYVNGTDRVGRPLIYFSPAFQPNRRPEKAIQYLVYTLERALDLSRQDGVEAYSFIIDCSGFSLSNMPPINIIKQTFTLLHHHYPTRVGFIMFLHTGSAFQFLWKMLTPLVSPMTRNKILFVPT---GEEEKILVERVDPQELDRKYGGAKDFTFEAHDYF 227
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BLAST of mRNA_Ecto-sp13_S_contig5614.15950.1 vs. uniprot
Match: A0A7S2XX21_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX21_9STRA)

HSP 1 Score: 114 bits (285), Expect = 6.940e-26
Identity = 60/160 (37.50%), Postives = 90/160 (56.25%), Query Frame = 2 
Query:  809 VDQGCR-----GAIIVKGHDLSRRPVVYFRPALDGRMEGDGNSKLMIYNLERAIRLMP--RNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQ-TAKYIHPSQLLSFAGGK 1264
            VD G R     G +   G   S  P+VYFRPAL+   + + +  L++Y LERAI+ M   R   ++ +++DC G GL + PP++ +   FK L H+YPMRLG V   N G  + + WK+VSP+L  RT+ K+  +    + Q   +Y++P  L    GGK
Sbjct:   10 VDAGMRREAAGGKMYTLGRGRSGEPLVYFRPALETGSDYEASLHLLVYTLERAIKSMDSKRGVEKFIVLVDCTGFGLSRAPPISLVTGQFKTLMHNYPMRLGKVFVVNAGTPMNMLWKIVSPILNERTRHKVFFLSEKEISQHIPQYVNPDVLEVEFGGK 169
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BLAST of mRNA_Ecto-sp13_S_contig5614.15950.1 vs. uniprot
Match: A0A1S8VSJ4_9FUNG (CRAL-TRIO domain-containing protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VSJ4_9FUNG)

HSP 1 Score: 102 bits (254), Expect = 2.600e-20
Identity = 58/236 (24.58%), Postives = 108/236 (45.76%), Query Frame = 2 
Query:  668 DTVALGRFLEAAFWSLEHDGKRVSDFIEESIAWREKIGADRLRKEDVVDQGCRGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNSKLMIYNLERAIRLMPRNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTAL------------------------GQTAKYIHPSQLLSFAGGKSPWQYDPAVYFSS 1303
            +T  + R+L+A  W+ +H   R+S     ++ WR +   D +  E+V  +   G  ++ G D   +PV+Y  PA +     D   + ++YNLE+AI LMP       +++D E + +   PP++  ++  + +  HYP RLG     N    + + ++++ P +   TK+K+H++   AL                             YI    LL   GG   +++D + Y+S+
Sbjct:   72 NTACVVRYLKATKWNYDHAVTRLSA----TLQWRREYKPDEILAEEVAPEAETGKEVICGFDKQGQPVLYLIPARENTKNYDRQLRFVVYNLEKAISLMPNGVEGICMIVDYENISMSSAPPLSVTRRFLQTIGDHYPERLGKSFIINPTWYLSVLFRIIGPFMDPVTKSKIHMVDLKALMANPDSDKNSNDSKKPAAEGAGGWADVRNYISKDNLLVEYGGGYKFEWDFSQYWSA 303
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BLAST of mRNA_Ecto-sp13_S_contig5614.15950.1 vs. uniprot
Match: A0A1Y1YVQ1_9FUNG (CRAL/TRIO domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YVQ1_9FUNG)

HSP 1 Score: 97.4 bits (241), Expect = 7.230e-19
Identity = 63/214 (29.44%), Postives = 104/214 (48.60%), Query Frame = 2 
Query:  668 DTVALGRFLEAAFWSLEHDGKRVSDFIEESIAWREKIGADRLRKEDVVDQGCRGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNS--KLMIYNLERAIRLMPRNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAKY-IHPSQLLSFA-GGKSPWQYDPAVYF 1297
            D  +L R+L+A  WS+++      D +E++  WRE    + +  E V DQ  + +  V G D+  RPV+Y +   D   + D     KL+I+ LERAI++MP    Q  +++D       +  P+   K+    L++HYP RLG  +  N      + + +V P L   TK K+  +       ++ + I P+ LL    GG  P+ YD   Y+
Sbjct:   58 DDSSLYRYLKATNWSVQN----AFDRLEKTKQWRETFRPNEITFEAVRDQALQKSNYVNGFDMYGRPVIYLKKVADKHQDKDPEEGFKLLIFCLERAIKVMPPTVHQLVVIMDFTLYSESKSIPLNIAKRTIDTLANHYPERLGLSIMYNAPWVFSMFFNMVQPFLDKVTKEKIKFVKKKMADSSSPFAIIPADLLETTYGGNLPFDYDHDQYY 267
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BLAST of mRNA_Ecto-sp13_S_contig5614.15950.1 vs. uniprot
Match: A0A427YPV0_9TREE (CRAL-TRIO domain-containing protein n=1 Tax=Saitozyma podzolica TaxID=1890683 RepID=A0A427YPV0_9TREE)

HSP 1 Score: 99.8 bits (247), Expect = 1.120e-18
Identity = 58/204 (28.43%), Postives = 97/204 (47.55%), Query Frame = 2 
Query:  686 RFLEAAFWSLEHDGKRVSDFIEESIAWREKIGADRLRKEDVVDQGCRGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNSKLMIYNLERAIRLMPRNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAKYIHPSQLLSFAGGKSPWQYDPAVYF 1297
            R++ AA W ++   +R+   IE    WR +   + +  EDV  +   G II+ G D   RP++Y RP  +         + +I+NLERAI LMP    Q  I++D +    +  P +   +K+  +L +HY  RLG  L  N+   +   +  +SP +   T+ K+   P     +  + + PSQL    GG     +D  +Y+
Sbjct:   90 RYMRAAKWKMDDAKRRIKGTIE----WRREFKPELIEPEDVSVEAETGKIIISGFDYDARPIIYMRPGRENTETSPRQIRHLIFNLERAIDLMPPGQEQVAIIVDYKSATSQSNPSIGTARKVLNILQNHYVERLGRGLVVNMPWWINAFFSGISPFMDPITRDKIRFNP-----KLTELVPPSQLDYEFGGDYHLNFDHKIYW 284
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BLAST of mRNA_Ecto-sp13_S_contig5614.15950.1 vs. uniprot
Match: A0A507F0S8_9FUNG (Uncharacterized protein n=2 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507F0S8_9FUNG)

HSP 1 Score: 99.8 bits (247), Expect = 2.810e-18
Identity = 61/193 (31.61%), Postives = 92/193 (47.67%), Query Frame = 2 
Query:  686 RFLEAAFWSLEHDGKRVSDFIEESIAWREKIGADRLRKEDVVDQGCRGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNSKLMIYNLERAIRLMPRNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAKYIHPSQLLSFAGGK 1264
            R+L+A  W+LE    +    ++ S+ WR +     +  E+V  +   G   V G     +PV+Y    LD     D N +  ++ +ERAI LMP    + TIV+D EG+GL   PPV++M ++  +   HYP RLGH + ++        W V+SP L    KAK+          T     P +L S A  K
Sbjct:   66 RYLQATHWNLETATAK----LKASLQWRNEFKPSEIPPEEVEPEAVCGKGFVHGFSKDGQPVLYGCGRLDDLKTWDRNLRFCVFLVERAIGLMPEGVEKLTIVLDNEGLGLWNSPPVSFMLQLVSITEKHYPERLGHCILSSPSWFGWGLWNVISPFLDPAIKAKVFFADMGRKTATPTEQTPDELSSGAEKK 254
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BLAST of mRNA_Ecto-sp13_S_contig5614.15950.1 vs. uniprot
Match: A0A1E3HUD4_9TREE (CRAL-TRIO domain-containing protein n=4 Tax=Cryptococcus TaxID=5206 RepID=A0A1E3HUD4_9TREE)

HSP 1 Score: 95.9 bits (237), Expect = 2.120e-17
Identity = 57/206 (27.67%), Postives = 98/206 (47.57%), Query Frame = 2 
Query:  686 RFLEAAFWSLEHDGKRVSDFIEESIAWREKIGADRLRKEDVVDQGCRGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNSKLMIYNLERAIRLMPRNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVGPSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAKYIHPSQLLSFAGGKSPWQYDPAVYFSS 1303
            R++ AA W L     R+   +E    WR +   + +  EDV  +   G II+ G D   RP++Y RP  +         + +IYNLERA+ +MP    Q  I++D +    +  P +   +K+  +L +HY  RLG  L  N+   +   +  +SP +   T+ K+   P     +  + + P+QL +  GG   ++YD   Y+ +
Sbjct:   91 RYMRAAKWKLPDAKTRIKGTLE----WRREYKPELIGPEDVGIEAESGKIIITGFDNDARPIIYMRPGRENTETSPRQIRHLIYNLERALDIMPPGQEQVAIIVDYKSATSQSNPSIGTARKVLNILQNHYVERLGRGLVVNMPWWINAFFSGISPFMDPITRDKIRFNP-----KLTELVPPAQLDAEFGGDYKFEYDFKHYWKT 287
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5614.15950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D8LQH2_ECTSI9.870e-28896.64CRAL-TRIO domain-containing protein n=2 Tax=Ectoca... [more]
A0A835ZL56_9STRA4.910e-4642.22CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
D7FQ39_ECTSI1.790e-3232.20CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A4D9CSV1_9STRA7.210e-2930.57Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2XX21_9STRA6.940e-2637.50Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1S8VSJ4_9FUNG2.600e-2024.58CRAL-TRIO domain-containing protein n=1 Tax=Batrac... [more]
A0A1Y1YVQ1_9FUNG7.230e-1929.44CRAL/TRIO domain-containing protein n=1 Tax=Basidi... [more]
A0A427YPV0_9TREE1.120e-1828.43CRAL-TRIO domain-containing protein n=1 Tax=Saitoz... [more]
A0A507F0S8_9FUNG2.810e-1831.61Uncharacterized protein n=2 Tax=Chytriomyces confe... [more]
A0A1E3HUD4_9TREE2.120e-1727.67CRAL-TRIO domain-containing protein n=4 Tax=Crypto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5614contigEcto-sp13_S_contig5614:3918..8615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score797.3
Seed ortholog evalue3.3e-228
Seed eggNOG ortholog2880.D8LQH2
Model size1739
Hectar predicted targeting categorysignal peptide
Exons6
EggNOG free text desc.intermembrane phospholipid transfer
EggNOG OGsKOG1470@1,KOG1470@2759
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-10_005630.1
Cds size1254
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5614.15950.1prot_Ecto-sp13_S_contig5614.15950.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5614 3985..8197 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463778.9088368-UTR-Ecto-sp13_S_contig5614:3917..39841681463778.9088368-UTR-Ecto-sp13_S_contig5614:3917..3984Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5614 3918..3984 +
1681463778.981696-UTR-Ecto-sp13_S_contig5614:8197..86151681463778.981696-UTR-Ecto-sp13_S_contig5614:8197..8615Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5614 8198..8615 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463778.9211118-CDS-Ecto-sp13_S_contig5614:3984..44611681463778.9211118-CDS-Ecto-sp13_S_contig5614:3984..4461Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5614 3985..4461 +
1681463778.9316006-CDS-Ecto-sp13_S_contig5614:5738..58811681463778.9316006-CDS-Ecto-sp13_S_contig5614:5738..5881Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5614 5739..5881 +
1681463778.941867-CDS-Ecto-sp13_S_contig5614:6442..66161681463778.941867-CDS-Ecto-sp13_S_contig5614:6442..6616Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5614 6443..6616 +
1681463778.952445-CDS-Ecto-sp13_S_contig5614:7009..71551681463778.952445-CDS-Ecto-sp13_S_contig5614:7009..7155Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5614 7010..7155 +
1681463778.962888-CDS-Ecto-sp13_S_contig5614:7444..76371681463778.962888-CDS-Ecto-sp13_S_contig5614:7444..7637Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5614 7445..7637 +
1681463778.9731023-CDS-Ecto-sp13_S_contig5614:8076..81971681463778.9731023-CDS-Ecto-sp13_S_contig5614:8076..8197Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5614 8077..8197 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5614.15950.1

>prot_Ecto-sp13_S_contig5614.15950.1 ID=prot_Ecto-sp13_S_contig5614.15950.1|Name=mRNA_Ecto-sp13_S_contig5614.15950.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=418bp
MGFKDAMGAISSLIIIGAASNACSAHVVGSRKHASAAAEACCLNSKRLRP
NRHLTSSRRSPSLTTDELLTSRSLFLIRGGASSEPFDESHPQSRWWRSRK
RWAKRKAAELAAKEAKESRTHAHTKHVILNLLRRLKRWIGVVVDFTTLKR
LRLLRQARRGSWQHGGPIPVRYRGVLQELRNEVVAKPGLERRAKKVHHEL
DTVALGRFLEAAFWSLEHDGKRVSDFIEESIAWREKIGADRLRKEDVVDQ
GCRGAIIVKGHDLSRRPVVYFRPALDGRMEGDGNSKLMIYNLERAIRLMP
RNSWQYTIVIDCEGMGLKQLPPVTYMKKMFKLLSHHYPMRLGHVLFTNVG
PSVMLCWKVVSPLLQARTKAKMHLIPSTALGQTAKYIHPSQLLSFAGGKS
PWQYDPAVYFSSDAASL*
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mRNA from alignment at Ecto-sp13_S_contig5614:3918..8615+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5614.15950.1 ID=mRNA_Ecto-sp13_S_contig5614.15950.1|Name=mRNA_Ecto-sp13_S_contig5614.15950.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4698bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5614:3918..8615+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCTGGCAGCTACGTGCATGCCAACATGCTTACAGGAGGGAGGTGTGGT
GGCTGCTAGTACAGGCCATGGGTTTCAAGGACGCCATGGGCGCAATATCA
AGCTTGATCATCATCGGCGCTGCTTCAAACGCATGCAGTGCTCACGTGGT
GGGCAGCAGAAAACACGCATCAGCAGCAGCAGAGGCCTGCTGCTTGAACT
CGAAACGGTTGAGACCGAACCGCCACCTCACGAGCAGCAGGCGATCGCCC
TCGCTTACAACAGACGAGTTGCTCACCAGCAGATCACTCTTTTTGATACG
AGGGGGCGCGAGCTCAGAACCATTCGATGAAAGCCACCCTCAGTCTCGGT
GGTGGAGATCGCGGAAACGATGGGCCAAGCGGAAGGCAGCAGAGCTAGCG
GCGAAGGAGGCGAAAGAGAGCCGAACCCACGCGCACACAAAACATGTTAT
TCTAAACTTGCTTCGACGACTGAAGCGCTGGATTGGCGTGGTGGTCGACT
TCACCACGCTGAAGCGTCTTCGCTTGCTGCGGCAAGCGAGAAGGGTAAGC
GCATCGTGACAGCAAGTTGGAGGCGCACCTACGCAGTATCATGAACGTCC
AGGCACCGCCCACAGCAGCAGTACACCCTGGGCCCGACGCATAATGAATG
TTTTGTTCACGAAGGTTGTGTCCTGCTCCTGTAGGACATCAGAATAAGAA
CCCTCCAATGCCGTAACTGCTGTACGTACAAATTGCTGTTTGCCATTGGC
AATTTGTACACACCTTTGATACATACTCAAGCCGATGCTCGTGTACTCTG
CGAAAGTCTTCTTATTGCAATTGCAGTTGCCCTACAAGTCAACTTCCACC
CCGTGATACAACGGACGCACAGCAGTAGTAGTCACCGCCTGAAAACAGCG
CGACTGGTGTACGCTAAATTCAGCCGTCTTACTTGTTCAAACCCGCCGCC
CACACTGCTGTCTAATCCTGGAGAGCCAGCTAAAAAAGTACGCGTTGAGT
TGTTCGAACACTCGGCCTAACTACAACCGTTTCCTCTGCGGTGCTTTATG
CATGTATACCGTAGTTGGCCGAGGGATGGCACCCCCGTGTTGCCGTTTTA
ATAGCGTATTTCTCCACAACTACTGTAGGAGGGTGCGAACACCCGCCGGT
ACCTCTCAGGAAAGCCCTCGACGAGATGTTTCCAAAACTACCCTTTTCGG
CAGTGATACCCCCCCTGGTGGTGGATAAAAATGAAGTTTTACGAATACGC
TATTTAACACGGGGGTACCATCTCTCCACCAACTACGCAAATCAACAGCA
ACTATCGTTATCAGGTTTTATAGCATGTACTTGCTAGATTTTAGCCGAGT
TTTCTTACGGTCAAGTTTTCAAGTTTAGTGCGCCCTAAGTTGAGGCTGAG
AATTTCTTAAAAACTCCGGGGTGCTCGATGAGTACGGTGTGCTCTACAAC
CGAGGTCTCGGAGATGCTGCGCGTCGAGATTTTAGCGCAGGCTCTCAACG
CGAGCGGCCACCGGGATGCAACCCCCATCGACCAATTTTAGCGCACTTTT
CACCTCGTCACAGTAGTGGACGGTTGGGCCACCTTGAGTAGAGCGAGGCT
CTTTTACGTGTAGCCACAGCCGCAGAGCGAAGCGCGTAAAGCTTGAGATC
AGGGTCGGGATTGCAACGAACTTCTGACTTTTGGGACCCTCGCTCGTGGT
GGTACTCAGCATGTTGCTGCTGTTTGTGACGCAACCTCCCGTTATTGTTA
TTCCAAGATGGCTGCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTC
GTTTTTTTTTCATGTTTTTAGGGGTCGTGGCAGCACGGAGGGCCGATCCC
CGTCAGATATCGAGGTGTGCTGCAGGAGCTGAGGAACGAGGTTGTGGCGA
AGCCGGGCCTGGAGAGGCGCGCCAAGAAGGTCCACCACGAGCTAGATACC
GTTGCTCTTGGAAGGTGGGGTCATGAGTTACGGTAGCTGCCCTAGCCCAA
GCCCTAAGGCGTGCCACTAGCGGTTGTGTTGGATGTATGGGGTTTGGCTC
TGGGAGCGCAGGCTCGTGGTAAGGCCTCGAGAAACGATTTACTACCACGC
TCGTGTGATACGACGGGTGCGGTGTGCTGCAGCTCGTCTTGAAACAGGGG
AGTGACTTAGTCATGGTCATGGCATCCAAGGAAACACTCGAAGCAAACGC
AGCAGAGGTGGCGGCGTAGCAGCTCGTGTCGATAGCGTCTGCTGTGCCTC
GATATCCACTCGTCTAGTCGTGACGCTGTTACCGCGAAAGCCGCACCTCC
TTTTTGTTTGAAGCATGGTGTGACCACACAATCTCGGCCTGACTCTCTTG
TGGCGAAGTTCCTTAGGTATGAAAGGGCCGATACTGCTGTACGCGGGAAG
CTTTTAATGTGTACATGTTCGCCAATTTCAACTGCATAAGGCCAAGACAA
CAAAAACAACAACAACAACAACAACAACAACACCCTTTTGTTATGTTTTG
TCTCACCACGTGCGCCGTTTTACAGGTTTTTGGAGGCGGCGTTTTGGTCG
TTGGAGCACGACGGCAAGCGGGTGAGCGACTTCATAGAGGAGTCCATCGC
CTGGAGGGAAAAGATCGGGGCAGATCGCCTCCGAAAGGAGGACGTAGTCG
ACCAAGGATGCCGTGGGGCCATCATTGTGAAGGGCCACGATCTCAGCAGG
TGACGAGACATATCCGCGTATGTACGCGGCAAGAGTAGGATTGGCCGCGA
GATTCCGAGCAAGGAATCGTCCGTTACCGAAAAAGTCACCGTCTATATAG
TATCCCTGGGCACTACTTTTCGGGAGCAAAAGGTCCAAAAGTCAGGGAAA
GCGGCGACGCGCCTCCAGGCGCCTTCTTGTGCTCGGACAACATGGATGGC
GCTGCTGTCGTACCCTCCCCCCCACACACACGGAGGTCCTACTCGCAAGG
ACGTGCAGCAGTATCATGCGGCTGTGTTGGTTCCCATGTGATTTCACGTC
CGATTCGACGTCGGGTTAGTCCATGTGCGCACCACTCACTGTCATGCGAC
GGATGGCTTGGCGGGTGCTCTGCTGCCCGCTCGTTGTCGTAGGCGACCGG
TGGTGTACTTTAGACCAGCCCTTGACGGAAGGATGGAGGGAGACGGCAAC
TCGAAGCTGATGATTTACAACCTGGAGAGAGCGATTCGCCTCATGCCAAG
AAACAGCTGGCAATATACCATCGTCATCGACTGTGAAGGTATGTGAGTGA
AGTTGAAACTCCATGTTCCTGTATGACTGACTCGCCCTTTGGCGGCATCG
CGCACGTGTAATTTTTTTCCGTGGTTAAGGGTCCTCTTGCGGCACCAATG
ATCCGAATTTGGAACTCTTTCATACCGCCTATCCTCCTCCGTCATCTCGA
GGTGTTAAACGCGGCACTCATACTTATCCGATTTGGACATACATATATCT
TCCATACTCCTAAAAGCAGTAGCCGACATCTCCTCGGGCCACCTTGCTGT
CACGCGGCCCGCGCGCGCGCCCCGCAGGGATGGGCCTCAAGCAGCTCCCC
CCCGTGACGTACATGAAGAAGATGTTCAAGCTGCTGAGCCACCACTACCC
GATGCGCCTTGGGCACGTCCTGTTCACGAACGTGGGGCCCAGCGTGATGC
TCTGCTGGAAGGTGGTCTCGCCTCTCCTGCAGGCCAGAACCAAGGCCAAG
ATGCACCTCATACCCTCCACGTGAGAATGCAGTCGTGGTTCCGATGTAAG
AGGGTACAGTTGTCAGTTGGACCAGTACGGACATGAGCAGGTACGGAGCG
GAGACCGGTGAAGACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAACAGTACCTTGTAAGAAGGGGCTCCCGTATATGAGGGAA
GTCGAAACCGGTTGGACACGTGCTCGACCCGATACATTATACATCTTGTT
CCGTTACAAGCGGGGCTCCGATGTTTCAGGGTCGTTGAAACGGTTGTATG
GTTGGGTATCCTCTTATCACGGTACAAGAGGGGGAGGTTCGAGGGCTTGT
TTTTTTTAATCAACACGTCACGCCGAAGTAAGGGTGATCAATCGCCTACA
ACGGCTTCCCAGCCCTGATCCTCTCTACCTGCTGTTGTCCGACTCCACTG
CGCGCGCAGGGCACTAGGCCAAACGGCCAAGTACATCCACCCGAGCCAAC
TCCTGTCCTTCGCGGGAGGCAAGTCGCCATGGCAGTACGACCCGGCGGTA
TACTTCTCCAGCGATGCAGCCAGTTTGTAGACAGCAGCGGGGGCGAGGGG
GGGGTGCACTCACAGCCGGGCATGCCCCAGTCGTTAGATCATTGACCAAG
CATCCCTTCAAAGCCGGGACGGAGCACGCCGGGTTCTCACCGGACAAGTC
TCGCACATCACCAAGCGCGAAGCACCGCGATACTCGGCGAGTTGCATGGA
GGGTGCGCTGCATCCTGCTCAGGGTGTTCGGCATCTTGTGTTTACTTCTT
TCCATACGGATTACAGCGGGGGAACGGGGCTTGCCCTTGTGTTTTGATTG
GTTGAGCGCATGAGAATATTTACGCGTTTTGCCACTAGATTTCGGTGGAC
AGCAGTCTTCGACGCCGACCCCCCCCCCCCCCCCCCCCGCGCGCGCACGA
CCTTATGAGTGCCAATTTTGTCGATAGCGTGTGTGTGTGGGAGGTCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5614:3918..8615+

>mRNA_Ecto-sp13_S_contig5614.15950.1 ID=mRNA_Ecto-sp13_S_contig5614.15950.1|Name=mRNA_Ecto-sp13_S_contig5614.15950.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1254bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5614:3918..8615+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTTTCAAGGACGCCATGGGCGCAATATCAAGCTTGATCATCATCGG
CGCTGCTTCAAACGCATGCAGTGCTCACGTGGTGGGCAGCAGAAAACACG
CATCAGCAGCAGCAGAGGCCTGCTGCTTGAACTCGAAACGGTTGAGACCG
AACCGCCACCTCACGAGCAGCAGGCGATCGCCCTCGCTTACAACAGACGA
GTTGCTCACCAGCAGATCACTCTTTTTGATACGAGGGGGCGCGAGCTCAG
AACCATTCGATGAAAGCCACCCTCAGTCTCGGTGGTGGAGATCGCGGAAA
CGATGGGCCAAGCGGAAGGCAGCAGAGCTAGCGGCGAAGGAGGCGAAAGA
GAGCCGAACCCACGCGCACACAAAACATGTTATTCTAAACTTGCTTCGAC
GACTGAAGCGCTGGATTGGCGTGGTGGTCGACTTCACCACGCTGAAGCGT
CTTCGCTTGCTGCGGCAAGCGAGAAGGGGGTCGTGGCAGCACGGAGGGCC
GATCCCCGTCAGATATCGAGGTGTGCTGCAGGAGCTGAGGAACGAGGTTG
TGGCGAAGCCGGGCCTGGAGAGGCGCGCCAAGAAGGTCCACCACGAGCTA
GATACCGTTGCTCTTGGAAGGTTTTTGGAGGCGGCGTTTTGGTCGTTGGA
GCACGACGGCAAGCGGGTGAGCGACTTCATAGAGGAGTCCATCGCCTGGA
GGGAAAAGATCGGGGCAGATCGCCTCCGAAAGGAGGACGTAGTCGACCAA
GGATGCCGTGGGGCCATCATTGTGAAGGGCCACGATCTCAGCAGGCGACC
GGTGGTGTACTTTAGACCAGCCCTTGACGGAAGGATGGAGGGAGACGGCA
ACTCGAAGCTGATGATTTACAACCTGGAGAGAGCGATTCGCCTCATGCCA
AGAAACAGCTGGCAATATACCATCGTCATCGACTGTGAAGGGATGGGCCT
CAAGCAGCTCCCCCCCGTGACGTACATGAAGAAGATGTTCAAGCTGCTGA
GCCACCACTACCCGATGCGCCTTGGGCACGTCCTGTTCACGAACGTGGGG
CCCAGCGTGATGCTCTGCTGGAAGGTGGTCTCGCCTCTCCTGCAGGCCAG
AACCAAGGCCAAGATGCACCTCATACCCTCCACGGCACTAGGCCAAACGG
CCAAGTACATCCACCCGAGCCAACTCCTGTCCTTCGCGGGAGGCAAGTCG
CCATGGCAGTACGACCCGGCGGTATACTTCTCCAGCGATGCAGCCAGTTT
GTAG
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