mRNA_Ecto-sp13_S_contig5610.15944.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5610.15944.1
Unique NamemRNA_Ecto-sp13_S_contig5610.15944.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5610.15944.1 vs. uniprot
Match: D7G0A6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A6_ECTSI)

HSP 1 Score: 294 bits (753), Expect = 5.730e-98
Identity = 156/187 (83.42%), Postives = 165/187 (88.24%), Query Frame = 3
Query:    3 MIKANVASPDSRGCEVYSIVLIIVNVLFFLSIFGNTWAAAKASFSRRHVQDMVLGVDIVNEKQLDKIIGPKRTKVKRTKQQKLDDALGPDDGASFSKAVEDGKMEDLEAAPAWEADPDDPPDSPIDISSRIYARDPGGHSVASTVAIPSTFWGTPSFNASPSGAGGPSVADRLSVNAIDYVSVSVAA 563
            MIKANVASPDSRGC+VYSIVLIIVNVLFFLSIF +TWAAAKAS SRRHVQDMVLGVDIVNEKQLDKIIGPK T VK+T QQKLDDALGPDDGA   KAVEDGKMEDLEAAPAWEADPDDPPDSPIDISSR+YA +P GHS+ASTVAIPST WG PS NASPSG GG SVA R SVN++   S S +A
Sbjct:   66 MIKANVASPDSRGCKVYSIVLIIVNVLFFLSIFWDTWAAAKASSSRRHVQDMVLGVDIVNEKQLDKIIGPKNTNVKKTNQQKLDDALGPDDGAGVDKAVEDGKMEDLEAAPAWEADPDDPPDSPIDISSRVYALNPRGHSLASTVAIPSTVWGAPSINASPSGTGGSSVAGR-SVNSVASASASASA 251          
BLAST of mRNA_Ecto-sp13_S_contig5610.15944.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI)

HSP 1 Score: 314 bits (805), Expect = 6.660e-96
Identity = 161/188 (85.64%), Postives = 171/188 (90.96%), Query Frame = 3
Query:    3 MIKANVASPDSRGCEVYSIVLIIVNVLFFLSIFGNTWAAAKASFSRRHVQDMVLGVDIVNEKQLDKIIGPKRTKVKRTKQQKLDDALGPDDGASFSKAVEDGKMEDLEAAPAWEADPDDPPDSPIDISSRIYARDPGGHSVASTVAIPSTFWGTPSFNASPSGAGGPSVADRLSVNAIDYVSVSVAAA 566
            MIKANVASPDSRG EVYS+VLIIVNVLFFLSIF NTWAAAKASFSRRHVQDM+LGVDIVNEKQLDKIIGPK TKVK+T QQKLDDALGPDDGA   KAVEDGKMEDLEAAPAWEADPDDPPDSP+DISSR ++RDPGGHSVASTVA+PSTFWG PS NASPSG GGPSVA R SVN++  VS S +AA
Sbjct: 1616 MIKANVASPDSRGSEVYSVVLIIVNVLFFLSIFWNTWAAAKASFSRRHVQDMMLGVDIVNEKQLDKIIGPKNTKVKKTNQQKLDDALGPDDGAGVDKAVEDGKMEDLEAAPAWEADPDDPPDSPVDISSRFFSRDPGGHSVASTVAVPSTFWGAPSINASPSGTGGPSVAGRRSVNSVASVSASASAA 1803          
BLAST of mRNA_Ecto-sp13_S_contig5610.15944.1 vs. uniprot
Match: A0A6H5JI42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI42_9PHAE)

HSP 1 Score: 297 bits (761), Expect = 1.580e-93
Identity = 157/185 (84.86%), Postives = 167/185 (90.27%), Query Frame = 3
Query:   12 ANVASPDSRGCEVYSIVLIIVNVLFFLSIFGNTWAAAKASFSRRHVQDMVLGVDIVNEKQLDKIIGPKRTKVKRTKQQKLDDALGPDDGASFSKAVEDGKMEDLEAAPAWEADPDDPPDSPIDISSRIYARDPGGHSVASTVAIPSTFWGTPSFNASPSGAGGPSVADRLSVNAIDYVSVSVAAA 566
            ANVASP SR CEVYSIVLIIVNVLF LSIFGNTWAAAKASFSRRH  DMVLGVDIVNEK+LDKIIGPK+TK K+T QQKLDDAL PDDGA F+K VEDGKMEDL+A PAWEADPD PPDSPIDISSR+YARDP GHSVASTVAIPSTFWGT SF+ASPSGAGGPSVADR SV ++D +SVS AAA
Sbjct:  553 ANVASPCSRSCEVYSIVLIIVNVLFVLSIFGNTWAAAKASFSRRH--DMVLGVDIVNEKELDKIIGPKKTKAKKTNQQKLDDALAPDDGAGFAKTVEDGKMEDLKATPAWEADPDGPPDSPIDISSRMYARDPRGHSVASTVAIPSTFWGTTSFDASPSGAGGPSVADRRSVISVDDISVSAAAA 735          
BLAST of mRNA_Ecto-sp13_S_contig5610.15944.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE)

HSP 1 Score: 295 bits (756), Expect = 2.670e-89
Identity = 155/188 (82.45%), Postives = 167/188 (88.83%), Query Frame = 3
Query:    3 MIKANVASPDSRGCEVYSIVLIIVNVLFFLSIFGNTWAAAKASFSRRHVQDMVLGVDIVNEKQLDKIIGPKRTKVKRTKQQKLDDALGPDDGASFSKAVEDGKMEDLEAAPAWEADPDDPPDSPIDISSRIYARDPGGHSVASTVAIPSTFWGTPSFNASPSGAGGPSVADRLSVNAIDYVSVSVAAA 566
            MIKANVA+PDSRG  VYS+VLIIVNVLFFLSIF NTWAAAKASFSRRH  DM+LGVDIVNEKQLDKIIGPK+ K K+TKQQKLDDALGPDDGA   KAVEDGK+EDLEAAP WEADPDDPPDSP+DISSR++ARDP GHSVASTVAIPS F G PS NASPSGAGGP VA R SVN++D VSVS +AA
Sbjct: 1822 MIKANVANPDSRGSAVYSVVLIIVNVLFFLSIFWNTWAAAKASFSRRH--DMMLGVDIVNEKQLDKIIGPKKAKAKKTKQQKLDDALGPDDGAGIDKAVEDGKLEDLEAAPIWEADPDDPPDSPVDISSRVFARDPVGHSVASTVAIPSNFRGAPSINASPSGAGGPGVAGRRSVNSVDSVSVSASAA 2007          
BLAST of mRNA_Ecto-sp13_S_contig5610.15944.1 vs. uniprot
Match: D7G0A7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A7_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 2.600e-77
Identity = 122/130 (93.85%), Postives = 126/130 (96.92%), Query Frame = 3
Query:    3 MIKANVASPDSRGCEVYSIVLIIVNVLFFLSIFGNTWAAAKASFSRRHVQDMVLGVDIVNEKQLDKIIGPKRTKVKRTKQQKLDDALGPDDGASFSKAVEDGKMEDLEAAPAWEADPDDPPDSPIDISSR 392
            MIKANVASPDSRGCEVYS+VLIIVNVLFFLSIF NT AAAKASFSRRHVQDMVLGVDIVNEKQLDKIIGPK+TKVK+TKQQKLDDALGPDDGA F+KAVEDGKMEDLEAAPAWE DPDDPPDSPIDISSR
Sbjct:   31 MIKANVASPDSRGCEVYSVVLIIVNVLFFLSIFWNTLAAAKASFSRRHVQDMVLGVDIVNEKQLDKIIGPKKTKVKKTKQQKLDDALGPDDGAGFAKAVEDGKMEDLEAAPAWEVDPDDPPDSPIDISSR 160          
BLAST of mRNA_Ecto-sp13_S_contig5610.15944.1 vs. uniprot
Match: D7G119_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G119_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 3.570e-17
Identity = 48/114 (42.11%), Postives = 68/114 (59.65%), Query Frame = 3
Query:    3 MIKANVASPDSRGCEVYSIVLIIVNVLFFLSIFGNTWAAAKASFSRRHVQDMVLGVDIVNEKQLDKIIGPKRTKVKRTKQQKLDDALGPDDGASFSKAVEDGKMEDLEAAPAWE 344
            +IK+  A  DS G   YS+ L+IVN++FFLSI+ N  A  KA FSR H QDM+LGVD+V+E  ++K++GP+         +K D+++G   G        D K ED E  P W+
Sbjct: 1394 VIKSGAADKDSSGSAAYSVALVIVNIMFFLSIWFNACATTKAMFSRSHAQDMLLGVDVVDESTINKVLGPEM--------RKTDESMGKTGG--------DAKTEDGEERPFWD 1491          
BLAST of mRNA_Ecto-sp13_S_contig5610.15944.1 vs. uniprot
Match: A0A6H5K4A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A5_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 4.880e-17
Identity = 47/114 (41.23%), Postives = 65/114 (57.02%), Query Frame = 3
Query:    3 MIKANVASPDSRGCEVYSIVLIIVNVLFFLSIFGNTWAAAKASFSRRHVQDMVLGVDIVNEKQLDKIIGPKRTKVKRTKQQKLDDALGPDDGASFSKAVEDGKMEDLEAAPAWE 344
            +IK+  A  DS G   YS+ L+IVN++FFLSI+ N    AKA FSR H QDM+LGVDIV+E  +++++GP++ K K                     A  D K ED E  P+W+
Sbjct: 1627 VIKSGAADKDSSGSAAYSVALVIVNIMFFLSIWFNACTTAKAMFSRSHAQDMLLGVDIVDESTINQVLGPEKRKTKEP----------------HGTAGGDAKTEDREERPSWD 1724          
BLAST of mRNA_Ecto-sp13_S_contig5610.15944.1 vs. uniprot
Match: D7FXY9_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY9_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 1.650e-16
Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 3
Query:    3 MIKANVASPDSRGCEVYSIVLIIVNVLFFLSIFGNTWAAAKASFSRRHVQDMVLGVDIVNEKQLDKIIGPKRTKVKRTKQQKLDDALGPDDGASFSKAVEDGKMEDLEAAPAWE 344
            +IK+  A  DS G   YS+ L+IVN++FFLSI+ N    AKA FSR H QDM+LGVDIV+E  +++++GP++ K K                     A  D K ED E  P W+
Sbjct: 1352 VIKSGAADKDSSGSAAYSVALVIVNIMFFLSIWFNACTTAKAMFSRSHAQDMLLGVDIVDESTINQVLGPEKRKTKEPS----------------GTACGDAKTEDGEERPFWD 1449          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5610.15944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G0A6_ECTSI5.730e-9883.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0B0_ECTSI6.660e-9685.64Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JI42_9PHAE1.580e-9384.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRA9_9PHAE2.670e-8982.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0A7_ECTSI2.600e-7793.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G119_ECTSI3.570e-1742.11Asn/thr-rich large protein family protein n=1 Tax=... [more]
A0A6H5K4A5_9PHAE4.880e-1741.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXY9_ECTSI1.650e-1641.23Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5610contigEcto-sp13_S_contig5610:2857..4293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size566
Hectar predicted targeting categorysignal anchor
Exons3
Cds size564
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463778.4588885-UTR-Ecto-sp13_S_contig5610:2856..28581681463778.4588885-UTR-Ecto-sp13_S_contig5610:2856..2858Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5610 2857..2858 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463778.469349-CDS-Ecto-sp13_S_contig5610:2858..30081681463778.469349-CDS-Ecto-sp13_S_contig5610:2858..3008Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5610 2859..3008 +
1681463778.4793158-CDS-Ecto-sp13_S_contig5610:3235..34741681463778.4793158-CDS-Ecto-sp13_S_contig5610:3235..3474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5610 3236..3474 +
1681463778.4909387-CDS-Ecto-sp13_S_contig5610:4118..42931681463778.4909387-CDS-Ecto-sp13_S_contig5610:4118..4293Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5610 4119..4293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5610.15944.1prot_Ecto-sp13_S_contig5610.15944.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5610 2859..4293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5610.15944.1

>prot_Ecto-sp13_S_contig5610.15944.1 ID=prot_Ecto-sp13_S_contig5610.15944.1|Name=mRNA_Ecto-sp13_S_contig5610.15944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=188bp
MIKANVASPDSRGCEVYSIVLIIVNVLFFLSIFGNTWAAAKASFSRRHVQ
DMVLGVDIVNEKQLDKIIGPKRTKVKRTKQQKLDDALGPDDGASFSKAVE
DGKMEDLEAAPAWEADPDDPPDSPIDISSRIYARDPGGHSVASTVAIPST
FWGTPSFNASPSGAGGPSVADRLSVNAIDYVSVSVAAA
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mRNA from alignment at Ecto-sp13_S_contig5610:2857..4293+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5610.15944.1 ID=mRNA_Ecto-sp13_S_contig5610.15944.1|Name=mRNA_Ecto-sp13_S_contig5610.15944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1437bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5610:2857..4293+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGATGATCAAGGCCAACGTGGCCAGCCCTGACTCTAGAGGCTGCGAGGTA TACTCGATCGTGCTGATCATCGTCAATGTACTTTTCTTCCTGTCCATCTT TGGGAATACCTGGGCCGCGGCTAAGGCTTCCTTCAGCAGGCGGCACGTGC AGGCGAGACAGGCTGAGAGGGAGAGAGAGAGAGAGAGAGAGAGGTCCTGT TTGCTGATGGGATGACGATGATGATTGTTTTCCTTGCACCATTTTAAGTA GAGCCTTTCTTTCTTCCTTTTGTTAAGATCCAAGCTTTCCCTCTGTTGGT GGCGACGTCTGGTTGCCACCTCCCGCTCCAAGCATCACACCTTGGTTCTG ATCTTGACGCGCTTGCCCTGCCTATTCAGGACATGGTGCTGGGAGTCGAC ATCGTCAACGAGAAACAGCTGGACAAGATCATCGGCCCGAAGAGGACCAA GGTCAAGAGGACAAAGCAGCAGAAGCTCGACGACGCCCTCGGTCCCGATG ACGGTGCTAGCTTCTCTAAGGCCGTCGAAGACGGGAAGATGGAAGACCTT GAGGCTGCCCCCGCCTGGGAGGCGGACCCGGACGACCCTCCCGACTCGCC CATCGACATCAGCAGCAGGTGGGATGATATGTAGCCGTTGCAGTTGTGGT GGTGGCAAGTTTACGTTGCTGTGGTACCAACGATAGTCTACGCTTTTCCC AGAGTTTTGGCGACACCAGGAATGGGATGGATGTGGAAAACTAGTACAAC ATATTGGTGCCATCGGGAGCAGCTGGAGTCGTTTTTTCGGAGTGTTTTCT TCGTGAGTCTTTGCGTCGACGTCACCAAAGCTCAGCTTGTTTTATTTTTT TTTGTTGGCAACGAGTGTTGTCCCCAGCAGACGTCCCGAACTATGGTGTC GTTGGAACAGTCCGGTCGAGAACTTTCCGAAAAATCATTGTTTCGTGTGG TTTAGACACCGTCCTCGTCGTTAAGTAATCGCGGTTTGAAAATTGGTCGA GGGGGTGCGTTCTCTGATGGAGTAGTCGAGCTTGAAAGTCGGTCCAGGGG GTGTAGTATCTTGCATCATGTCACCCACCACTACGGTATTGCCCTACGTA GGTCGTTACATAGTACACAAGTGACTAAGGCACTCGTCTCGATCCGAAGC ATTCGACGAGAGACGAACTTCCCCCTGAGATTTGCGATAAGGCTAACAGT CAACACTTCTCCGCCTCCCACCCCCGCGATCGACCGTGTGCGTTTTCTGT CGTGCGTGGAAGGATTTATGCTCGGGACCCCGGGGGGCACTCGGTTGCGA GCACGGTGGCGATACCCTCCACCTTTTGGGGGACTCCGTCTTTCAACGCA TCTCCCAGCGGTGCCGGCGGCCCCAGCGTCGCTGACAGACTGTCCGTCAA CGCGATCGATTATGTTTCTGTTTCTGTTGCTGCTGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5610:2857..4293+

>mRNA_Ecto-sp13_S_contig5610.15944.1 ID=mRNA_Ecto-sp13_S_contig5610.15944.1|Name=mRNA_Ecto-sp13_S_contig5610.15944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=564bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5610:2857..4293+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCAAGGCCAACGTGGCCAGCCCTGACTCTAGAGGCTGCGAGGTATA
CTCGATCGTGCTGATCATCGTCAATGTACTTTTCTTCCTGTCCATCTTTG
GGAATACCTGGGCCGCGGCTAAGGCTTCCTTCAGCAGGCGGCACGTGCAG
GACATGGTGCTGGGAGTCGACATCGTCAACGAGAAACAGCTGGACAAGAT
CATCGGCCCGAAGAGGACCAAGGTCAAGAGGACAAAGCAGCAGAAGCTCG
ACGACGCCCTCGGTCCCGATGACGGTGCTAGCTTCTCTAAGGCCGTCGAA
GACGGGAAGATGGAAGACCTTGAGGCTGCCCCCGCCTGGGAGGCGGACCC
GGACGACCCTCCCGACTCGCCCATCGACATCAGCAGCAGGATTTATGCTC
GGGACCCCGGGGGGCACTCGGTTGCGAGCACGGTGGCGATACCCTCCACC
TTTTGGGGGACTCCGTCTTTCAACGCATCTCCCAGCGGTGCCGGCGGCCC
CAGCGTCGCTGACAGACTGTCCGTCAACGCGATCGATTATGTTTCTGTTT
CTGTTGCTGCTGCT
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