mRNA_Ecto-sp13_S_contig5606.15939.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5606.15939.1
Unique NamemRNA_Ecto-sp13_S_contig5606.15939.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5606.15939.1 vs. uniprot
Match: D8LMG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMG0_ECTSI)

HSP 1 Score: 388 bits (997), Expect = 4.310e-133
Identity = 196/201 (97.51%), Postives = 199/201 (99.00%), Query Frame = 2 
Query:    2 YKTAYYRKQTKNHWARDDPGFAVLQAFFLVVATFAFGVAFGARGVWTYVGLLLHSVGVHWLLCGVVMSSLCRWIANSRLLQHRSHSVKQEVEWMYALDIHSNSFFPLFVCLYVAQLLLLPLLVGQSVWSLILANTLYAVAFSVYFYVTHLGYRSLPFLHTTEVFLYPVVGIIMLLLLSIILLPFGVRVNATLAMAKLYFLD 604
            YKTAYYRKQTKNHWARDDPGFAVLQ FFLVVATFAFGVAFGARGVWTYVGLLLHSVGVHWLLCGVVMSSLCRWIANSRLLQHRSHSV+QEVEWMYALDIHSNSFFPLFVCLYV QLLLLPLLVGQSVWSLILANTLYAVAFSVYFYVTHLGYRSLPFLHTTEVFLYPVVGIIMLLLLSIILLPFG+R+NATLAMAKLYFLD
Sbjct:   22 YKTAYYRKQTKNHWARDDPGFAVLQTFFLVVATFAFGVAFGARGVWTYVGLLLHSVGVHWLLCGVVMSSLCRWIANSRLLQHRSHSVEQEVEWMYALDIHSNSFFPLFVCLYVVQLLLLPLLVGQSVWSLILANTLYAVAFSVYFYVTHLGYRSLPFLHTTEVFLYPVVGIIMLLLLSIILLPFGIRINATLAMAKLYFLD 222
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BLAST of mRNA_Ecto-sp13_S_contig5606.15939.1 vs. uniprot
Match: A0A835Z945_9STRA (UNC-50 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z945_9STRA)

HSP 1 Score: 233 bits (594), Expect = 1.540e-71
Identity = 117/200 (58.50%), Postives = 148/200 (74.00%), Query Frame = 2 
Query:    2 YKTAYYRKQTKNHWARDDPGFAVLQAFFLVVATFAFGVAFGARGVWTYVGLLLHSVGVHWLLCGVVMSSLCRWIANSRLLQHRSHSVKQEVEWMYALDIHSNSFFPLFVCLYVAQLLLLPLLVGQSVWSLILANTLYAVAFSVYFYVTHLGYRSLPFLHTTEVFLYPVVGIIMLLLLSIILLPFGVRVNATLAMAKLYFL 601
            YKTAYYRKQTKN WARDDP FAVLQ  F V    A+G+AFG R  W Y+ L+ ++V +HWLL GV  ++  R +AN+ +L  R+HSV+Q VEW+YA DIH N+FF LF+ +YV Q LLLP+L+G SV +L+L+N LYA+ F  YFY+THLGYRSLPFL  TE FLYPVV ++ LL  S++L   G+RVN T  MA +YFL
Sbjct:   60 YKTAYYRKQTKNQWARDDPAFAVLQLAFSVAGAVAYGMAFGLRAFWGYIALIANAVLLHWLLFGVAAATAGRALANAHMLVRRAHSVEQRVEWLYAFDIHCNAFFMLFIVVYVGQFLLLPVLLGPSVGALLLSNALYALGFGAYFYITHLGYRSLPFLCKTETFLYPVVAVVTLLATSVLLAALGMRVNMTRVMAHVYFL 259
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BLAST of mRNA_Ecto-sp13_S_contig5606.15939.1 vs. uniprot
Match: A0A7S1Y6X4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y6X4_9STRA)

HSP 1 Score: 213 bits (543), Expect = 4.090e-64
Identity = 111/202 (54.95%), Postives = 147/202 (72.77%), Query Frame = 2 
Query:    2 YKTAYYRKQTKNHWARDDPGFAVLQAFFLVVATFAFGVAFGARGVWTYVGLLLHSVGVHWLLCGVVMSSLCRWIANSRLLQHRSHS-VKQEVEWMYALDIHSNSFFPLFVCLYVAQLLLLPLLVGQSVWSLILANTLYAVAFSVYFYVTHLGYRSLPFLHTTEVFLYPVVGIIMLLLLSIILLPFGVRVNATLAMAKLYFLD 604
            YKTAYYRKQTKNHWARDDP F VLQA FL+V+  A+ VAF A  + T++G L+HS+  +WL+ G ++ S+ R +AN  L  H+S S V+Q VEW+YA DIH N+FFPLF  LY  Q  LLPL++G S  +L++ANTLYAVAFS Y+Y+THLGYRSLPFL  TEVF++P+  +I+L +L+++  PF    N     A++Y  D
Sbjct:   41 YKTAYYRKQTKNHWARDDPAFCVLQAIFLLVSVVAYSVAFKAS-IGTFLGFLIHSLFWNWLVSGALVCSILREVANRHLTVHQSTSHVRQSVEWLYAFDIHCNAFFPLFCVLYGVQFFLLPLILGNSFLALVVANTLYAVAFSWYWYITHLGYRSLPFLTNTEVFMFPIAAVILLFVLNLVGYPFNFGWNFARVFAQIYLRD 241
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BLAST of mRNA_Ecto-sp13_S_contig5606.15939.1 vs. uniprot
Match: A0A7S1GMY0_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GMY0_CYCTE)

HSP 1 Score: 205 bits (522), Expect = 7.140e-61
Identity = 107/199 (53.77%), Postives = 148/199 (74.37%), Query Frame = 2 
Query:    2 YKTAYYRKQTKNHWARDDPGFAVLQAFFLVVATFAFGVAFGARGVWTYVGLLLHSVGVHWLLCGVVMSSLCRWIANSRLLQHRSHS-VKQEVEWMYALDIHSNSFFPLFVCLYVAQLLLLPLLVGQSVWSLILANTLYAVAFSVYFYVTHLGYRSLPFLHTTEVFLYPVVGIIMLLLLSIILLPFGVRVNATLAMAKLY 595
            YKT+YYRKQTKNHWARDDP F VLQA FL VA+ A+ VAF +  +   +G LLH++  +WL+ G +++++ R +AN  L  H+S S VKQ VEW+YA DIH N+FFPLF  LY  Q  LLPL++G+S+ + +L+NTLYA AFS Y+Y+THLGYR+LPFL  TEVFL+P+ GI ++ +L+++  PF +  NA+  +A +Y
Sbjct:   52 YKTSYYRKQTKNHWARDDPAFCVLQAVFLFVASLAYAVAFRST-LSGGMGFLLHTILWNWLVAGTIVATIARELANRHLCVHQSTSHVKQTVEWLYAFDIHCNAFFPLFCLLYGVQFFLLPLVLGKSLLAFLLSNTLYAAAFSWYWYITHLGYRALPFLSNTEVFLFPIAGIALVFVLNLVGYPFDMGWNASRLLATIY 249
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BLAST of mRNA_Ecto-sp13_S_contig5606.15939.1 vs. uniprot
Match: A0A7S2U7N4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7N4_9STRA)

HSP 1 Score: 206 bits (525), Expect = 8.550e-61
Identity = 109/201 (54.23%), Postives = 147/201 (73.13%), Query Frame = 2 
Query:    2 YKTAYYRKQTKNHWARDDPGFAVLQAFFLVVATFAFGVAFGARG-VWTYVGLLLHSVGVHWLLCGVVMSSLCRWIANSRLLQHRSHS-VKQEVEWMYALDIHSNSFFPLFVCLYVAQLLLLPLLVGQSVWSLILANTLYAVAFSVYFYVTHLGYRSLPFLHTTEVFLYPVVGIIMLLLLSIILLPFGVRVNATLAMAKLYF 598
            YKT+YYRKQTKNHWARDDP F  LQ  FL +A+ A+ VAF     V + +G  + S+ ++W   G++++S+ R  AN  L  H+S S V+Q VEW+YA DIH N+FFPLFV LY  Q  LLP+++G+S+ SL+LANTLYA AFS YFY+THLGYR+LPFL +TEVFL+P+ GI+++ L++++  PFG   NA+  MA  YF
Sbjct:   88 YKTSYYRKQTKNHWARDDPAFCFLQMVFLALASIAYCVAFREDSLVSSTIGFAIKSILINWFGLGILIASIGREFANRHLTVHQSSSHVRQGVEWLYAFDIHCNAFFPLFVALYGLQFFLLPIVLGKSLLSLVLANTLYAAAFSWYFYITHLGYRALPFLSSTEVFLFPIAGIMIVYLINLVGYPFGFGWNASRIMAHFYF 288
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BLAST of mRNA_Ecto-sp13_S_contig5606.15939.1 vs. uniprot
Match: A0A7S2ENT4_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ENT4_TRICV)

HSP 1 Score: 204 bits (518), Expect = 1.800e-59
Identity = 110/204 (53.92%), Postives = 148/204 (72.55%), Query Frame = 2 
Query:    2 YKTAYYRKQTKNHWARDDPGFAVLQAFFLVVATFAFGVAFGARGVW----TYVGLLLHSVGVHWLLCGVVMSSLCRWIANSRLLQHRSHS-VKQEVEWMYALDIHSNSFFPLFVCLYVAQLLLLPLLVGQSVWSLILANTLYAVAFSVYFYVTHLGYRSLPFLHTTEVFLYPVVGIIMLLLLSIILLPFGVRVNATLAMAKLYF 598
            YKTAYYRKQTKNHWARDDP FA LQ  FL VA+ A+ VAFG+ G+       +G  L S+ ++WL  G+V +S+CR I+N+ L+ H S + V+Q VE++YA DIH N+FFPLFV +Y  Q  LLP+++G+ + +L+L+N L+A AF  YFYVTHLGYR+LPFL  TEVFL+PV  +++L  L++I  PFG   NA+  MA +YF
Sbjct:  107 YKTAYYRKQTKNHWARDDPAFAALQIAFLSVASLAYSVAFGSDGLGGTLTAALGFGLKSILINWLAVGLVTASVCRSISNNHLVVHSSAAHVRQRVEFLYAFDIHCNAFFPLFVLIYGVQFFLLPVVLGRGLMALLLSNALFAAAFGWYFYVTHLGYRALPFLTNTEVFLFPVALVVLLFFLNLIGHPFGFGWNASRIMAYVYF 310
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BLAST of mRNA_Ecto-sp13_S_contig5606.15939.1 vs. uniprot
Match: A0A7S0G7V0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G7V0_9STRA)

HSP 1 Score: 202 bits (513), Expect = 5.950e-59
Identity = 110/206 (53.40%), Postives = 149/206 (72.33%), Query Frame = 2 
Query:    2 YKTAYYRKQTKNHWARDDPGFAVLQAFFLVVATFAFGVAFGARGVWTYVGL--LLHSVGVHWLLCGVVMSSLCRWIANSRLL-QH----RSHSVKQEVEWMYALDIHSNSFFPLFVCLYVAQLLLLPLLVGQSVWSLILANTLYAVAFSVYFYVTHLGYRSLPFLHTTEVFLYPVVGIIMLLLLSIILLPFGVRVNATLAMAKLYF 598
            YKT+YYRKQTK+HW+RDDP FA+LQ  FL VA+ A+ +AF   G   Y  L    +++ +++LL GVV+S++CR IAN+ L  QH     SH V+Q VEW+YA DIH N+FFP FV +Y AQ  LLP+++ + + SLI++NTLYA+AF  YFY+THLGYR+LPFL  TEVFL+PV G+  + +L+ I  PFG+  NA+  +A LYF
Sbjct:   87 YKTSYYRKQTKDHWSRDDPAFAILQIGFLAVASLAYCIAFRVSGNMIYGTLRFAFNNIIINYLLSGVVISTICRSIANTYLTHQHPRNSNSHVVRQGVEWLYAFDIHCNAFFPFFVLIYCAQFFLLPVVLQRGLVSLIVSNTLYALAFGWYFYITHLGYRALPFLSGTEVFLFPVAGVAAIYVLNFIGFPFGLGFNASRLVAHLYF 292
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BLAST of mRNA_Ecto-sp13_S_contig5606.15939.1 vs. uniprot
Match: A0A1E7FEU6_9STRA (UNC-50 protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEU6_9STRA)

HSP 1 Score: 198 bits (504), Expect = 2.670e-58
Identity = 104/200 (52.00%), Postives = 145/200 (72.50%), Query Frame = 2 
Query:    2 YKTAYYRKQTKNHWARDDPGFAVLQAFFLVVATFAFGVAFGARGVWTYVGLLLHSVGVHWLLCGVVMSSLCRWIANSRLLQHRSHS-VKQEVEWMYALDIHSNSFFPLFVCLYVAQLLLLPLLVGQSVWSLILANTLYAVAFSVYFYVTHLGYRSLPFLHTTEVFLYPVVGIIMLLLLSIILLPFGVRVNATLAMAKLYF 598
            YKTAYYRKQTKNHWARDDP FA L+  FL V+  A+ ++F    V   +   L+SV  +WL  G +++++ R +AN  L  H+S S V+Q VEW+YA DIH N+FFP+FV LY  Q  LLPL++G+S++SL+++NTLYA  F+ Y+Y+THLGYR+LPFL  TEVFL+PV  I ++ +L+++  PFG+  NA+  MA +YF
Sbjct:   41 YKTAYYRKQTKNHWARDDPAFAALEFIFLTVSCIAYAISFRVP-VTEGIAFWLYSVLFNWLGLGFIIATVGREMANRHLTDHKSTSHVRQSVEWLYAFDIHCNAFFPVFVLLYGVQFFLLPLVLGKSLFSLVVSNTLYAAGFAWYWYITHLGYRALPFLSQTEVFLFPVAAIALVFVLNLVGYPFGLGWNASRIMAHIYF 239
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BLAST of mRNA_Ecto-sp13_S_contig5606.15939.1 vs. uniprot
Match: A0A7R9YBX5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBX5_9STRA)

HSP 1 Score: 198 bits (503), Expect = 6.140e-58
Identity = 102/191 (53.40%), Postives = 136/191 (71.20%), Query Frame = 2 
Query:    2 YKTAYYRKQTKNHWARDDPGFAVLQAFFLVVATFAFGVAFGARGVWTYVGLLLHSVGVHWLLCGVVMSSLCRWIANSRLLQHRSHSVKQEVEWMYALDIHSNSFFPLFVCLYVAQLLLLPLLVGQSVWSLILANTLYAVAFSVYFYVTHLGYRSLPFLHTTEVFLYPVVGIIMLLLLSIILLPFGVRVNAT 574
            YKT +YRKQ KN WARDDP FAV Q   L V   A+ +AF    +  Y+ L+L+ V V W L G V++++  ++AN  LLQ  SHSV Q+VEW+YA DIH N+FFPLF+ ++V Q  LLP+L+ +   S+IL+N LYA AFSVYFY+THLGYR+LPFL  TEV+LYP+  + +  +LS+ + P GVR+NAT
Sbjct:   61 YKTNFYRKQMKNQWARDDPAFAVAQVLLLSVVAVAYALAFRVDSLSGYLSLILYCVVVDWFLFGCVVATIGWFVANKYLLQSHSHSVAQKVEWLYAFDIHCNAFFPLFLLVHVLQFFLLPILLLKVYPSMILSNLLYAAAFSVYFYITHLGYRALPFLTKTEVYLYPIGVVALAFVLSLFIAPLGVRINAT 251
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BLAST of mRNA_Ecto-sp13_S_contig5606.15939.1 vs. uniprot
Match: K8Z2V4_NANGC (Unc-50 family protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z2V4_NANGC)

HSP 1 Score: 195 bits (496), Expect = 1.100e-56
Identity = 106/202 (52.48%), Postives = 142/202 (70.30%), Query Frame = 2 
Query:    2 YKTAYYRKQTKNHWARDDPGFAVLQAFFLVVATFAFGVAFGARGVWT-YVGLLLHSVGVHWLLCGVVMSSLCRWIANSRLLQHRSHSVKQEVEWMYALDIHSNSFFPLFVCLYVAQLLLLPLLVGQSVWSLILANTLYAVAFSVYFYVTHLGYRSLPFLHTTEVFLYPVVGIIMLLLLSIILLPFG--VRVNATLAMAKLYF 598
            YK A YRK TKNHWARDDP  AV+Q  FL+V++ A+ +AF  RG    Y+ L L ++   WLL G+V++++CR +AN  LL+ RSHSV+QEVEW YA DIH N+F P F+   V    LLPLL+  S+ +LI++N ++  AF+VYFYVTHLGYR+LPFLH TEVFLYP +  ++L  L ++L   G   R+ AT  MA+LY+
Sbjct:   70 YKMASYRKHTKNHWARDDPALAVIQIAFLLVSSSAYALAFHVRGGPVHYLFLALRAILFDWLLVGLVVATVCRSVANRYLLELRSHSVEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFLLPLLLRPSLMALIVSNAIFGAAFAVYFYVTHLGYRALPFLHRTEVFLYPSILAVLLFFLFLVLGMLGEPYRIQATRTMARLYY 271
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5606.15939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMG0_ECTSI4.310e-13397.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z945_9STRA1.540e-7158.50UNC-50 n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7S1Y6X4_9STRA4.090e-6454.95Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1GMY0_CYCTE7.140e-6153.77Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S2U7N4_9STRA8.550e-6154.23Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2ENT4_TRICV1.800e-5953.92Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
A0A7S0G7V0_9STRA5.950e-5953.40Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1E7FEU6_9STRA2.670e-5852.00UNC-50 protein n=1 Tax=Fragilariopsis cylindrus CC... [more]
A0A7R9YBX5_9STRA6.140e-5853.40Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
K8Z2V4_NANGC1.100e-5652.48Unc-50 family protein n=3 Tax=Monodopsidaceae TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5606contigEcto-sp13_S_contig5606:5890..8980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score253.1
Seed ortholog evalue7.6e-65
Seed eggNOG ortholog2880.D8LMG0
Preferred nameUNC50
Model size1126
Hectar predicted targeting categorysignal anchor
GOsGO:0000139,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005637,GO:0005737,GO:0005794,GO:0006810,GO:0006937,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0019866,GO:0023052,GO:0030173,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031503,GO:0031965,GO:0031967,GO:0031975,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044057,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0051641,GO:0051668,GO:0051716,GO:0065007,GO:0090257,GO:0097120,GO:0097159,GO:0098588,GO:0098791,GO:1901363
Exons6
EggNOG free text desc.protein transport
EggNOG OGsKOG3012@1,KOG3012@2759
Cds size408
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5606.15939.1prot_Ecto-sp13_S_contig5606.15939.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5606 6409..8065 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463777.7178202-UTR-Ecto-sp13_S_contig5606:5889..64081681463777.7178202-UTR-Ecto-sp13_S_contig5606:5889..6408Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5606 5890..6408 -
1681463777.7719479-UTR-Ecto-sp13_S_contig5606:8065..81731681463777.7719479-UTR-Ecto-sp13_S_contig5606:8065..8173Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5606 8066..8173 -
1681463777.7832496-UTR-Ecto-sp13_S_contig5606:8543..86081681463777.7832496-UTR-Ecto-sp13_S_contig5606:8543..8608Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5606 8544..8608 -
1681463777.7942257-UTR-Ecto-sp13_S_contig5606:8954..89801681463777.7942257-UTR-Ecto-sp13_S_contig5606:8954..8980Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5606 8955..8980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463777.7305892-CDS-Ecto-sp13_S_contig5606:6408..65541681463777.7305892-CDS-Ecto-sp13_S_contig5606:6408..6554Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5606 6409..6554 -
1681463777.741663-CDS-Ecto-sp13_S_contig5606:7097..72121681463777.741663-CDS-Ecto-sp13_S_contig5606:7097..7212Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5606 7098..7212 -
1681463777.7510355-CDS-Ecto-sp13_S_contig5606:7666..77961681463777.7510355-CDS-Ecto-sp13_S_contig5606:7666..7796Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5606 7667..7796 -
1681463777.7606337-CDS-Ecto-sp13_S_contig5606:8048..80651681463777.7606337-CDS-Ecto-sp13_S_contig5606:8048..8065Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5606 8049..8065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5606.15939.1

>prot_Ecto-sp13_S_contig5606.15939.1 ID=prot_Ecto-sp13_S_contig5606.15939.1|Name=mRNA_Ecto-sp13_S_contig5606.15939.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp
MSSLCRWIANSRLLQHRSHSVKQEVEWMYALDIHSNSFFPLFVCLYVAQL
LLLPLLVGQSVWSLILANTLYAVAFSVYFYVTHLGYRSLPFLHTTEVFLY
PVVGIIMLLLLSIILLPFGVRVNATLAMAKLYFLD*
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mRNA from alignment at Ecto-sp13_S_contig5606:5890..8980-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5606.15939.1 ID=mRNA_Ecto-sp13_S_contig5606.15939.1|Name=mRNA_Ecto-sp13_S_contig5606.15939.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3091bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5606:5890..8980- (Ectocarpus species13 EcNAP12_S_4_19m)
CTATAAAACGGCGTACTACCGAAAACGTGAGTCCTGGGCTTGTATGCTTG
GAGAATTGCAATGCCCTCTGCTGCGCCTCATTTTGCCGGGTACTAGTCCT
TGGCGTCCCCGTTAGTCCTACAAGTTGTCCCACAAGTCCTTGCAGCAGCC
GTACAGTAGATTCGCTGTGAGATGGCATGAAGCAACAAGCAAATTATCTT
TTTGCTGTTTTTGTACTCCTGCGACTCGGCTCATGTGGGTTGTAAGGACT
CATCTTGGCTGCTGTCAGGCACATTGATCCTCTCGACCACCGTCTGGCTT
CCCCTTTCCCCCTCTTCCCGCCCCCCCCACCCCACCCTACCCCGCCCCCA
ATGCATCCTCTGACTTCGACAGAAACAAAAAACCACTGGGCAAGAGATGA
CCCTGGGTTTGCAGTTCTGCAGGCGTTTTTTCTTGTGGTGAGTGACTACA
ACTTGTCGTAGACTACGCGTAGCGTTGCATTCCCGTCGAGTTACAACCCG
CCCAGGCCGTGCGTTCACCCAACCATGACAGAACCATTAATATTTGTCAA
CTCGTGCAGGAACTTCCTGAGCATCGAGACCAGGGGTGAAAAGCAATCGA
AGGAAGGAATTTGCGGCCCAATAATTTGCATGGCCCACGGACATTTCTCC
GCATGTTGCCGTTCGTAACGCATACCACTGCACCAATCAATACAATCGAT
GTCTCCAGGCTGCGGCTGGCTTGTTCAGTTGGTGGTCTGCTCCTCGTTGC
CCCCCTCCGCATCCAGTCTGTGCTGAAGGTGATCGTATTGCACGGTGTTT
GTAACAGGTGGCGACGTTCGCCTTCGGCGTGGCGTTTGGCGCTAGGGGTG
TGTGGACGTATGTGGGATTGTTACTGCACTCGGTGGGGGTACACTGGTTG
TTATGCGGGGTGGTGATGTCGTCCTTGTGCCGGTGAGTGCTGTTTTCATG
CGTGGTCTTACTGCTGTGGCCTGGAATTTTTCTCAAGTCCTGTTGTTGTG
GTGGGTGGAGGTCGATGGTTGCATCAAGCATTCGGCAGGGTTGTCCTTTT
TTCGGGCTCACGCACGAACCGTAGCAAGGCTACTCGTTAATTGCGAGAGT
TGGAACCTGCGTGTGCAGGAAAGAGTGACGGGCTCACGGCAAAATGACAC
TTGCTTTGTCACCACTTTCGGATTGCTGTTGCAGATGGATAGCCAATAGT
CGCCTGCTGCAGCACCGGTCTCATTCCGTGAAGCAAGAGGTGGAGTGGAT
GTACGCCTTGGACATCCACAGCAACTCCTTTTTCCCGCTCTTCGTATGTC
TCTACGTCGCCCAGGTTTGTTTGTCGTCATGTTTGTCGGGTTGGGGTTGA
CATGAACACTGCTGTGCACCTATCTATCAGTCGATGAACATACCAATGAC
GCCTCCCTCACTCTCACTACTGTCTCGCAGGCTGCTTTGGCTCAACAAGT
ACAAGCAACTCTTAGGATGTTGGAGTGATAAGCGTTGGTTGTATAGGGGC
CCGCCATTGGCATTCATGTTAGCATGCCGGAAGTGAGATGACGACAAGAA
TAAGCATTGCCACGCGAGCCCATGACGACTTAACTCTTGTCGTTTGTGTG
CAGCAAGATCTACAACTATTAGTTGGTCCTAATGCTACTTATGCATTGCC
GCCATCACTTGCTGAACTAAAAACTCGGCATCGAGACTTACGTGCTACGT
ATTCTTCCCTGTGCCCTTCTTCTTTCTTTGCGATATCGCGTGAAAACGTG
CACTTGTTCGGCTCGCAGCTGCTGCTGCTGCCTCTACTGGTGGGTCAGTC
GGTATGGTCCCTCATCCTGGCCAACACGCTCTACGCCGTGGCTTTCTCGG
TCTATTTCTATGTTACTCACCTGGGATATCGATGTGAGAACGGTACACTA
ATCGTGGACGTGTTGGTTGGCCTTGCGTATCATACGAAAAGGTTGCCGCT
TGCTTTGAAGCGTTCGGCGTGGACGTATCTTATTACTCTGCAACCGTCCT
GGTTTTGTTGATGGTGTTGTCTCCTATTTACCACCCCACACCTGAGGTAC
CCATCGGGTGGTTTGGAACCTATTTGGATCCTTTCAAATTGGAACCTATT
TGGATCCTTTCAAACTTGGTAAATTTTACATTCCGTATGACTTAAATTTT
CTTCGCAGGGTGGTTTAAATGTGCCATGTGTTTGCACCTTGCTCAACGAA
CAGACGTTGCTCTCTTGGTCTGATCCGTGTTACTGTAGTCATCAATCGCG
CTGTGTTTGCATCGTGCCCTTCAAGGTAGAGGAACAACCTTGTGAGAGCC
TGTTGCTTAAGTCTGATCCTCGGCAGCCCCCCCACCCCCTGCCTTGTCTT
GTCTCGATGAAATCACGGACAAACACGATCGGCAACCACGGATCGGCATG
AATGGTGGGTGTGCCTGTGGACACAGCTCTTCCGTTCTTGCACACGACGG
AGGTGTTCCTGTACCCGGTGGTGGGGATAATCATGCTCCTGCTGCTTTCC
ATCATACTCTTGCCCTTCGGCGTCCGCGTCAACGCCACCCTGGCCATGGC
AAAATTATATTTCCTAGATTGATGAGTAAAGCGGCTGCAACGAATGGTGG
TGTTGCAATTCTATCCTCCGCGTGTAGTTCTACTCGATCAAGCAGAGAAT
CATCACGAACGTCCTGATCTGCATCTGTACGTGAAGATGCTCAGCTGACA
AGACACTTGAACGGTATCCGAAGAACAGCGGTCCCATTTCTCAAGTGAGG
TTGGAGAGGAGAGGAAGCGAACGGACTTGGTTGGCCCGGTTGCGAGTCCC
GAGGACCAGGACTTGCGTAAGACACATGGAAAGGGGCCGTGAAGCGAGCG
ACCTTGTGGCTGTTGCCGGGGTGGTAAGACAGTCGCACAAAGGGACTTAC
TGCAAGCAGGTACCTTCGTATTTCCTGTATTCGTTACCAAGCTATCACAT
GGCATATCTTGTGTCTCATTCGCGGTGCACCTTTTTGGTGTGATGGCTTT
GTTGTGGCGTGTGTGATCGCATCTTTCGCAAAATGGTGCCAATGGCATAG
TGGTGTTGGTTGCCATCAAGACAATAGACGGCAGAGTCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5606:5890..8980-

>mRNA_Ecto-sp13_S_contig5606.15939.1 ID=mRNA_Ecto-sp13_S_contig5606.15939.1|Name=mRNA_Ecto-sp13_S_contig5606.15939.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5606:5890..8980- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTCCTTGTGCCGATGGATAGCCAATAGTCGCCTGCTGCAGCACCG
GTCTCATTCCGTGAAGCAAGAGGTGGAGTGGATGTACGCCTTGGACATCC
ACAGCAACTCCTTTTTCCCGCTCTTCGTATGTCTCTACGTCGCCCAGCTG
CTGCTGCTGCCTCTACTGGTGGGTCAGTCGGTATGGTCCCTCATCCTGGC
CAACACGCTCTACGCCGTGGCTTTCTCGGTCTATTTCTATGTTACTCACC
TGGGATATCGATCTCTTCCGTTCTTGCACACGACGGAGGTGTTCCTGTAC
CCGGTGGTGGGGATAATCATGCTCCTGCTGCTTTCCATCATACTCTTGCC
CTTCGGCGTCCGCGTCAACGCCACCCTGGCCATGGCAAAATTATATTTCC
TAGATTGA
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