mRNA_Ecto-sp13_S_contig56018.15932.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56018.15932.1
Unique NamemRNA_Ecto-sp13_S_contig56018.15932.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig56018.15932.1 vs. uniprot
Match: D7FVK1_ECTSI (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVK1_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.470e-13
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    4 CC---RGALIKPWLPTEVKEKRDWDISSSERLDIYR 102
            CC   RGALIKPWLPTEVKEKRDWDISSSERLDIYR
Sbjct:  596 CCMLARGALIKPWLPTEVKEKRDWDISSSERLDIYR 631
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BLAST of mRNA_Ecto-sp13_S_contig56018.15932.1 vs. uniprot
Match: A0A8J2SC62_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SC62_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.590e-12
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 MCCRGALIKPWLPTEVKEKRDWDISSSERLDIYR 102
            M  RGALIKPWLPTE+KEKRDWDISSSERLDI R
Sbjct:  371 MLARGALIKPWLPTELKEKRDWDISSSERLDILR 404
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BLAST of mRNA_Ecto-sp13_S_contig56018.15932.1 vs. uniprot
Match: A0A7R9Z482_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z482_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.410e-11
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 MCCRGALIKPWLPTEVKEKRDWDISSSERLDIYR 102
            M  RGALIKPWLPTE+KE+R WDIS+SERLD+ +
Sbjct:    2 MLARGALIKPWLPTEIKERRHWDISASERLDVLK 35
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BLAST of mRNA_Ecto-sp13_S_contig56018.15932.1 vs. uniprot
Match: A0A448ZFI2_9STRA (tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZFI2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 4.070e-11
Identity = 28/34 (82.35%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 MCCRGALIKPWLPTEVKEKRDWDISSSERLDIYR 102
            M  RGALIKPWLPTE+KEKRDWDIS+SERLDI +
Sbjct:  547 MLGRGALIKPWLPTEIKEKRDWDISASERLDILK 580
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BLAST of mRNA_Ecto-sp13_S_contig56018.15932.1 vs. uniprot
Match: A0A7S4DAY5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAY5_HETAK)

HSP 1 Score: 62.8 bits (151), Expect = 9.170e-11
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    1 MCCRGALIKPWLPTEVKEKRDWDISSSERLDIY 99
            M  RGALIKPWLPTE+KE+RDWDIS+ ERLDI+
Sbjct:   97 MLGRGALIKPWLPTEIKEQRDWDISAGERLDIF 129
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BLAST of mRNA_Ecto-sp13_S_contig56018.15932.1 vs. uniprot
Match: A0A1E7EIW9_9STRA (FMN-linked oxidoreductase (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EIW9_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 9.920e-11
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 MCCRGALIKPWLPTEVKEKRDWDISSSERLDIYR 102
            M  RGALIKPWLPTE+KEKRDWDIS++ERLDI +
Sbjct:  233 MLGRGALIKPWLPTEIKEKRDWDISATERLDILK 266
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BLAST of mRNA_Ecto-sp13_S_contig56018.15932.1 vs. uniprot
Match: A0A835ZAB5_9STRA (Dus domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAB5_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.010e-10
Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 MCCRGALIKPWLPTEVKEKRDWDISSSERLDIYR 102
            M  RGALIKPWLPTE+KEKRDWDIS++ERLDI +
Sbjct:  230 MVGRGALIKPWLPTEIKEKRDWDISATERLDILK 263
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BLAST of mRNA_Ecto-sp13_S_contig56018.15932.1 vs. uniprot
Match: A0A7S0ZBV0_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZBV0_9RHOD)

HSP 1 Score: 63.5 bits (153), Expect = 1.040e-10
Identity = 27/35 (77.14%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 MCCRGALIKPWLPTEVKEKRDWDISSSERLDIYRS 105
            M  RGALIKPWL TE+KE+RDWDIS+SERLD+Y+S
Sbjct:  407 MVARGALIKPWLFTELKERRDWDISASERLDLYKS 441
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BLAST of mRNA_Ecto-sp13_S_contig56018.15932.1 vs. uniprot
Match: A0A2P4WW49_9STRA (tRNA-dihydrouridine synthase 3 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WW49_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.100e-10
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 MCCRGALIKPWLPTEVKEKRDWDISSSERLDIYR 102
            M  RGALIKPWLPTE+KE+R WDISSSER D+ +
Sbjct:    1 MLARGALIKPWLPTEIKERRHWDISSSERFDLLK 34
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BLAST of mRNA_Ecto-sp13_S_contig56018.15932.1 vs. uniprot
Match: A0A7S3DY45_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DY45_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.490e-10
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 MCCRGALIKPWLPTEVKEKRDWDISSSERLDIYR 102
            M  RGALIKPWLPTE+KEKR WDISSSERLD+ +
Sbjct:   33 MIGRGALIKPWLPTEIKEKRVWDISSSERLDMLK 66
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56018.15932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVK1_ECTSI1.470e-1391.67tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=2 T... [more]
A0A8J2SC62_9STRA4.590e-1288.24Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9Z482_9STRA3.410e-1173.53Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A448ZFI2_9STRA4.070e-1182.35tRNA-dihydrouridine(47) synthase [NAD(P)(+)] n=1 T... [more]
A0A7S4DAY5_HETAK9.170e-1178.79Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1E7EIW9_9STRA9.920e-1179.41FMN-linked oxidoreductase (Fragment) n=1 Tax=Fragi... [more]
A0A835ZAB5_9STRA1.010e-1079.41Dus domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S0ZBV0_9RHOD1.040e-1077.14Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A2P4WW49_9STRA1.100e-1073.53tRNA-dihydrouridine synthase 3 n=1 Tax=Phytophthor... [more]
A0A7S3DY45_9STRA1.490e-1079.41Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56018contigEcto-sp13_S_contig56018:690..803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score70.5
Seed ortholog evalue1.9e-10
Seed eggNOG ortholog2880.D7FVK1
Preferred namedus3l
Model size114
KEGG koko:K05544
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0002943,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016491,GO:0016627,GO:0017150,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0055114,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360
Exons1
EggNOG free text desc.tRNA dihydrouridine synthase activity
EggNOG OGsCOG0042@1,KOG2333@2759
EC1.3.1.89
Cds size114
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463777.241014-CDS-Ecto-sp13_S_contig56018:689..8031681463777.241014-CDS-Ecto-sp13_S_contig56018:689..803Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56018 690..803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56018.15932.1prot_Ecto-sp13_S_contig56018.15932.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56018 690..803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56018.15932.1

>prot_Ecto-sp13_S_contig56018.15932.1 ID=prot_Ecto-sp13_S_contig56018.15932.1|Name=mRNA_Ecto-sp13_S_contig56018.15932.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=38bp
MCCRGALIKPWLPTEVKEKRDWDISSSERLDIYRSARL
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mRNA from alignment at Ecto-sp13_S_contig56018:690..803+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56018.15932.1 ID=mRNA_Ecto-sp13_S_contig56018.15932.1|Name=mRNA_Ecto-sp13_S_contig56018.15932.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56018:690..803+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCTGCAGGGGTGCCTTGATTAAGCCGTGGCTACCGACCGAGGTAAA
GGAGAAGAGGGACTGGGACATCTCCTCCTCGGAGAGGCTTGACATCTACA
GGTCAGCAAGATTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56018:690..803+

>mRNA_Ecto-sp13_S_contig56018.15932.1 ID=mRNA_Ecto-sp13_S_contig56018.15932.1|Name=mRNA_Ecto-sp13_S_contig56018.15932.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=114bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56018:690..803+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCTGCAGGGGTGCCTTGATTAAGCCGTGGCTACCGACCGAGGTAAA
GGAGAAGAGGGACTGGGACATCTCCTCCTCGGAGAGGCTTGACATCTACA
GGTCAGCAAGATTA
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