mRNA_Ecto-sp13_S_contig560.15929.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig560.15929.1
Unique NamemRNA_Ecto-sp13_S_contig560.15929.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig560.15929.1 vs. uniprot
Match: D7FPM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM6_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.940e-11
Identity = 29/34 (85.29%), Postives = 29/34 (85.29%), Query Frame = 2 
Query:    2 TRPPLPMAD*PPSGIKEMTSFGLLPVLNSFCRRL 103
            TRPPLP AD PPSGIKEM SFGLLPVLN  CRRL
Sbjct:    2 TRPPLPTADWPPSGIKEMASFGLLPVLNLSCRRL 35
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig560.15929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPM6_ECTSI1.940e-1185.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig560contigEcto-sp13_S_contig560:18724..19249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size108
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size105
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463776.83072-CDS-Ecto-sp13_S_contig560:18723..187891681463776.83072-CDS-Ecto-sp13_S_contig560:18723..18789Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig560 18724..18789 +
1681463776.8416858-CDS-Ecto-sp13_S_contig560:19209..192481681463776.8416858-CDS-Ecto-sp13_S_contig560:19209..19248Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig560 19210..19248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig560.15929.1prot_Ecto-sp13_S_contig560.15929.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig560 18724..19248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig560.15929.1

>prot_Ecto-sp13_S_contig560.15929.1 ID=prot_Ecto-sp13_S_contig560.15929.1|Name=mRNA_Ecto-sp13_S_contig560.15929.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
DTATLAHGGLTAQRNQGDDIIWFVAGVELILSSSG
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mRNA from alignment at Ecto-sp13_S_contig560:18724..19249+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig560.15929.1 ID=mRNA_Ecto-sp13_S_contig560.15929.1|Name=mRNA_Ecto-sp13_S_contig560.15929.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=526bp|location=Sequence derived from alignment at Ecto-sp13_S_contig560:18724..19249+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACACGGCCACCCTTGCCCATGGCGGATTGACCGCCCAGCGGAATCAAGG
AGATGACATCATTTGGGTGTGTTATGCTCGTGCGTGTGTCAAACCGGCTG
TCCTGCTACGCCGACTCAGAAACGACGGTAGTTTGTAACTCGTTATGGTA
TGGGTAGTTGCGATGATTTTTGCCGTTGATCTCTTGTATAAGTACGCTGG
AAAAGAGGAAGGGCACCATCGGCAGTGCTGTCGTCTCTTGTACGAGTACT
AAAAAGAGGGAGGGGAGGGGAGGGCATGGGCAGTGTAGTAGCCTTGGCGC
TATTTTGCAGTGCAAGAGGGGCCCCGCGCCGTGTTTTGAGAGACACCCAA
TCCGTTTACACGATGGATCGGCGCTCTCTTGTTTTGGTCTTATTCTCCGT
TGCTCCCCTCCCTCCCCGTGTGCGACGGCGTTAGCTTGTACTATCAGCTT
TTTCGATCCCTCTTTCGTCTTTTGTCTTGAGAATAGTTTGTTGCCGGTGT
TGAACTCATTCTGTCGTCGTCTGGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig560:18724..19249+

>mRNA_Ecto-sp13_S_contig560.15929.1 ID=mRNA_Ecto-sp13_S_contig560.15929.1|Name=mRNA_Ecto-sp13_S_contig560.15929.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig560:18724..19249+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACACGGCCACCCTTGCCCATGGCGGATTGACCGCCCAGCGGAATCAAGG
AGATGACATCATTTGGTTTGTTGCCGGTGTTGAACTCATTCTGTCGTCGT
CTGGT
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