mRNA_Ecto-sp13_S_contig560.15927.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig560.15927.1 vs. uniprot
Match: D7FPM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM9_ECTSI) HSP 1 Score: 490 bits (1262), Expect = 9.240e-172 Identity = 249/267 (93.26%), Postives = 253/267 (94.76%), Query Frame = 1
Query: 79 MVLRSLFLVALPTSLNLGSAFLLPSVPQVVLPDTSTAIVRHQHDTGSRSVLLAAAPTXXXXXXXTATAKKSFLRNLERKRAGEEVASSVLNADLHVLRSTPIQSSTTTVDNTRSWKGTWEICYAPHIQTLAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASEGGTNEAPRETVQVIFERFWWDRSGEDRPTGEPPGPSATPVDGFVQAAGKAMFFDGLSVFPVHYLDDDFCVFEFKAAGTVVASQRIS 879
MVLRSLFLVALP SLNLGSAFLLPSV QVVLPDTSTAI+RHQHDTGSRS+L AAAPT TATAKKSFLRNLERKRAGEEVASS LNADLHVL STP QSSTTTVDNTRSWKGTWEICYAPHIQTLAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASEGGTNEAPR+TVQVIFERFWWDRSGEDRPTGEPPG SATPVDGFVQAAGKAMFFDGLSVFPVHYLDDDFCVFEFKAAGTVVASQRI+
Sbjct: 1 MVLRSLFLVALPISLNLGSAFLLPSVQQVVLPDTSTAIIRHQHDTGSRSMLSAAAPTAAGGSSSTATAKKSFLRNLERKRAGEEVASSALNADLHVLGSTPTQSSTTTVDNTRSWKGTWEICYAPHIQTLAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASEGGTNEAPRQTVQVIFERFWWDRSGEDRPTGEPPGSSATPVDGFVQAAGKAMFFDGLSVFPVHYLDDDFCVFEFKAAGTVVASQRIA 267
BLAST of mRNA_Ecto-sp13_S_contig560.15927.1 vs. uniprot
Match: A0A6V1TFF4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TFF4_HETAK) HSP 1 Score: 104 bits (259), Expect = 9.460e-23 Identity = 57/165 (34.55%), Postives = 86/165 (52.12%), Query Frame = 1
Query: 418 SWKGTWEICYAPHIQTLAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASEGGTNEAPRETVQVIFERFWWDRSGEDRPTGEPPG------------PSATPVDGFVQAAGKAMFFDGLSVFPVHYLDDDFCVFEFKAAGTVVASQRI 876
++KG W +C+APHI TL+K+ LTEF + Y+ + + + S+ RY + + G+GW NA G + V +V++ F+ FWWD T EP PSAT V VQ GKA F + S+FP+ YLD+ C+FEF G + + ++
Sbjct: 27 TYKGVWSVCFAPHIYTLSKIFLTEFKPIEYHLLPGNS-IESYVRYSNPLIGAGWLNAAGSIDVRDDM----------SVKITFDNFWWDIQ-----TSEPRSLETFLQDFRTSPPSATDV--LVQNIGKAGFLESFSIFPLQYLDETLCIFEFPPLGVKIVASKV 173
BLAST of mRNA_Ecto-sp13_S_contig560.15927.1 vs. uniprot
Match: A0A835Z4A1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4A1_9STRA) HSP 1 Score: 104 bits (260), Expect = 4.640e-22 Identity = 74/243 (30.45%), Postives = 116/243 (47.74%), Query Frame = 1
Query: 151 SVPQVVLPDTSTAIVRHQHDTGSRSVLLAAAPTXXXXXXXTATAKKSFLRNLERKRAGEEVASSVLNADLHVLRSTPIQSSTTTVDN--TRSWKGTWEICYAPHIQTLAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASEGGTNEAPRETVQVIFERFWWDRSGEDRPTGEPPGPSATPVDGFVQAAGKAMFFDGLSVFPVHYLDDDFCVFEFKAAGTVVASQR 873
+VP + P TS H S++ L + A + R L K+A E+ S +N+D+ + + T T++ KG W +C+APHI ++ T+F V + G S+ ++ S +FGSGW NADG +V A +G + V + F+R+W DR D A+ +D +QAAG+ +F LS FP+ YLD+D CVF+F T +A++R
Sbjct: 21 AVPHQLAPTTS-----HHAQYSSQTTLALSTDKIVIPPSDAAVLSDAGARRLA-KQAFEDALRSGVNSDIDDAIRVLCELNPTPAPGLATQAAKGRWVVCHAPHIAAGGILLQTKF--VPEYWFDGQGNTSSYVKFTSSIFGSGWLNADG--IVYSADDG-------QAVVIEFKRYWMDRGTADPSLTPDVKRGASQMDSVIQAAGEGLFIKPLSYFPIKYLDEDLCVFDFPPLNTRIAARR 246
BLAST of mRNA_Ecto-sp13_S_contig560.15927.1 vs. uniprot
Match: A0A0G4HTV7_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HTV7_9ALVE) HSP 1 Score: 100 bits (249), Expect = 3.860e-20 Identity = 57/154 (37.01%), Postives = 86/154 (55.84%), Query Frame = 1
Query: 421 WKGTWEICYAPHIQTLAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASEGGTNEAPRETVQVIFERFWWDRSGEDRPTGEPPGPSA---TPVDGFVQAAGKAMFFDGLSVFPVHYLDDDFCVFEFKAAGTVVASQR 873
W G W++ +APHI+ L+K++L + V Y+ ++ S+ Y+S G GW A G +V GG E ETV V+F+ F W+ +DRPT PG + VD VQ G+ FF+ LS+FPV +LDD C+F+F+A + ++R
Sbjct: 142 WDGVWQVAHAPHIRKLSKLLLCKLGPVEYSISQKGSQISSYCLYQSPFIGRGWLAAAGGLV--REKPGGAGE---ETVTVVFDSFRWEPL-KDRPTILRPGDGKKMKSLVDVVVQKLGELTFFENLSLFPVRFLDDRLCLFDFEAVSLPIVAKR 289
BLAST of mRNA_Ecto-sp13_S_contig560.15927.1 vs. uniprot
Match: A0A7S3ANS9_9EUKA (Hypothetical protein n=2 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ANS9_9EUKA) HSP 1 Score: 96.7 bits (239), Expect = 8.040e-20 Identity = 58/140 (41.43%), Postives = 77/140 (55.00%), Query Frame = 1
Query: 427 GTWEICYAPHIQTLAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASEGGTNEAPRETVQVIFERFWWDRSGEDRPTGEPPGPSATPVDGFVQAAGKAMFFDGLSVFPVHYLDDDFCVFEFKA 846
G W + +APHI TL++++LT F + + G MVS+ RY S+V G GW G V A AP+ V +I++R WW GE PP S + VQA G+A F +GLSVFPV YL DD C+F F+A
Sbjct: 48 GRWRVVHAPHIDTLSRLLLTTFD--IEYCMDARGGMVSNVRYSSRVAGDGWLCTSGVVASDLA-------APK--VSIIWDRIWWLPGGE---ADAPPRASEGILRPIVQALGRAGFIEGLSVFPVRYLQDDLCIFNFQA 173
BLAST of mRNA_Ecto-sp13_S_contig560.15927.1 vs. uniprot
Match: A0A250X3A6_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X3A6_9CHLO) HSP 1 Score: 91.3 bits (225), Expect = 2.000e-17 Identity = 50/155 (32.26%), Postives = 82/155 (52.90%), Query Frame = 1
Query: 424 KGTWEICYAPHIQTLAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASEGGTNEAPRETVQVIFERFWWDRSGEDRPTGEPPGPSAT---PVDGFVQAAGKAMFFDGLSVFPVHYLDDDFCVFEFKAAGTVVASQRIS 879
+GTW++ +APHI ++ V+ +F +LY D ++ S+ +Y + G GW NA G +TV + F+RFW D G + E P + + +D ++ G+ FF L++FP+HYLD++ CVFEF + +A Q+IS
Sbjct: 84 QGTWKVFHAPHISRISSVLGAKFDPILYKLEGD--KLSSYVKYSHPLVGMGWLNA----------AGSMGRKYDDTVDIHFDRFWLD--GPETLREEIPRDAYSGLKDMDDWMSKLGRGFFFPQLALFPIHYLDEELCVFEFPPLNSKIAVQKIS 224
BLAST of mRNA_Ecto-sp13_S_contig560.15927.1 vs. uniprot
Match: A0A7S2NPB5_9EUKA (Hypothetical protein n=1 Tax=Cyanoptyche gloeocystis TaxID=77922 RepID=A0A7S2NPB5_9EUKA) HSP 1 Score: 89.7 bits (221), Expect = 1.410e-16 Identity = 62/200 (31.00%), Postives = 96/200 (48.00%), Query Frame = 1
Query: 283 KKSFLRNLERKRAGEEVASSVLNADLHVLRSTPIQSSTTTVDNTRSWKGTWEICYAPHIQTLAKVILTEFPSVLYNF--VSDDGRMVSHSRYESKVFGSGWFNADGRVVVLPASEGGTNEAPRETVQVIFERFWWDRSGEDRPTGEPPGPSATPVDGFVQAAGKAMFFDGLSVFPVHYLDDDFCVFEFKAAGTVVASQRI 876
K+SFL + +A E+ +N + L +T Q T + S+ G W++ YAPHI+ + ++ T F + Y + R+ S+ RY+ GW NA G + + S +V+++F FW + T + P AT AAG+ +FF+GLSVFPV Y D D VFEF GT++ R+
Sbjct: 84 KRSFLDTV--LKANEDRRKVDVNDLIEKLSAT--QGVTEPAYHLESFVGRWKVIYAPHIRNMEGILFTRFDPIEYVLQPAGEAMRIESNVRYQLGP-AQGWLNASGTIQPVDTS----------SVRILFSHFWTSSARPSPTTRDAPDVVATLPAQLTNAAGRLLFFEGLSVFPVRYSDSDLAVFEFPPLGTLLVISRV 268
BLAST of mRNA_Ecto-sp13_S_contig560.15927.1 vs. uniprot
Match: A0A6U0ESK7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A6U0ESK7_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.630e-10 Identity = 52/159 (32.70%), Postives = 81/159 (50.94%), Query Frame = 1
Query: 427 GTWEICYAPHIQTLAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGS-GWFNADGRVVVLPASEGGTNEAPRETVQVIFERFWWDRSGEDRPT---GEPPGPSATPVDG-----FVQAAGKAMFFDGLSVFPVHYLDDDFCVFEFKAAGTVVASQRI 876
GTW++ YAPH+ T+AK+ EF V Y + DD M SH+RY+ +F G+ + G + G N+ +V F++ W + D + P S T V + GK F + +SVFP+ YLDDD CVF+F+ GT + ++++
Sbjct: 142 GTWKVVYAPHMTTMAKLGGGEF-QVEY-ILRDDLTMDSHARYDFPLFKQRGYLSVSG-------TYGSVNDL---VCRVDFDQSWVKQLPVDEDIIVEKDVPYQSITEVPDSASKQVITTIGKLFFLEQVSVFPISYLDDDLCVFDFELLGTRICARKV 288
BLAST of mRNA_Ecto-sp13_S_contig560.15927.1 vs. uniprot
Match: A0A7S1YML6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YML6_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 1.240e-9 Identity = 49/162 (30.25%), Postives = 76/162 (46.91%), Query Frame = 1
Query: 427 GTWEICYAPHIQTLAKVILTEFPSVLYNFVSDDGRMVSHSRYESKVFGS-GWFNADGRVVVLPASEGGTNEAPRETVQVIFERFWWDRSGEDRPTGEPPGPSATPVDGFVQA-----------AGKAMFFDGLSVFPVHYLDDDFCVFEFKAAGTVVASQRI 876
G W++ YAPH+ T+A + E V Y+ + +D M SH+RY+ F G+ + G + G NE +V F++ W+ D G+ P Q G MF + +SVFPV Y+DDD CVF+F+ GT + +++I
Sbjct: 136 GLWKVIYAPHMTTMANIGGGEL-DVQYD-LKNDFTMTSHARYDFPFFKQKGYLSVSG-------TYGSVNEL---VCRVDFDQAWFKPFYIDEEDGKMTEEEDVPYASIEQVPDSIGKSIITNVGNLMFLESVSVFPVSYMDDDLCVFDFELLGTRIVARKI 285 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig560.15927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig560.15927.1 >prot_Ecto-sp13_S_contig560.15927.1 ID=prot_Ecto-sp13_S_contig560.15927.1|Name=mRNA_Ecto-sp13_S_contig560.15927.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=268bp MVLRSLFLVALPTSLNLGSAFLLPSVPQVVLPDTSTAIVRHQHDTGSRSVback to top mRNA from alignment at Ecto-sp13_S_contig560:4729..6534+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig560.15927.1 ID=mRNA_Ecto-sp13_S_contig560.15927.1|Name=mRNA_Ecto-sp13_S_contig560.15927.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1806bp|location=Sequence derived from alignment at Ecto-sp13_S_contig560:4729..6534+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig560:4729..6534+ >mRNA_Ecto-sp13_S_contig560.15927.1 ID=mRNA_Ecto-sp13_S_contig560.15927.1|Name=mRNA_Ecto-sp13_S_contig560.15927.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp13_S_contig560:4729..6534+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |