mRNA_Ecto-sp13_S_contig56.15923.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56.15923.1
Unique NamemRNA_Ecto-sp13_S_contig56.15923.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56.15923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56contigEcto-sp13_S_contig56:31248..33764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1623
Hectar predicted targeting categoryother localisation
Exons3
Cds size1035
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463775.9124267-UTR-Ecto-sp13_S_contig56:31247..313491681463775.9124267-UTR-Ecto-sp13_S_contig56:31247..31349Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig56 31248..31349 +
1681463775.9513144-UTR-Ecto-sp13_S_contig56:33278..337641681463775.9513144-UTR-Ecto-sp13_S_contig56:33278..33764Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig56 33279..33764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463775.9223247-CDS-Ecto-sp13_S_contig56:31349..320831681463775.9223247-CDS-Ecto-sp13_S_contig56:31349..32083Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56 31350..32083 +
1681463775.9314322-CDS-Ecto-sp13_S_contig56:32492..326961681463775.9314322-CDS-Ecto-sp13_S_contig56:32492..32696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56 32493..32696 +
1681463775.9419916-CDS-Ecto-sp13_S_contig56:33181..332781681463775.9419916-CDS-Ecto-sp13_S_contig56:33181..33278Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56 33182..33278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56.15923.1prot_Ecto-sp13_S_contig56.15923.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56 31350..33278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56.15923.1

>prot_Ecto-sp13_S_contig56.15923.1 ID=prot_Ecto-sp13_S_contig56.15923.1|Name=mRNA_Ecto-sp13_S_contig56.15923.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=345bp
MVTVPASRPSPEAGSPISRATRNKPSRVLHEPFVSPEFGASRATGPSRLG
GGPDSSDRGEISPAEFRGDGDTIDRRSWQGQQALLPQAAPLYTVSATSVA
GSGGGVVSAPPSALSNSMLPGKRLEAVVAGYTSVVGPPSARRSAPAAGSQ
EVQFQTKSDKTPSPYPSSREIEVEGTLNTSLDPPQDLSPFVTEATCTWGQ
ELGAIVGQAVNDSSRTANRRLGIQSSGGQPTLTTTGLFPQMMTLRFSSSV
RVKSVHVRASSVLNLVVHSSEGLLGSVHADSKAVTLPADGQHKWPREEGS
GRDIDVDVRGAKSFENTRSITVVITAGSGTFCSIHRIYARGFRA*
back to top

mRNA from alignment at Ecto-sp13_S_contig56:31248..33764+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56.15923.1 ID=mRNA_Ecto-sp13_S_contig56.15923.1|Name=mRNA_Ecto-sp13_S_contig56.15923.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2517bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56:31248..33764+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGACATACGCATGCAGCGTAAGAAAACAGTCTCTCTGGGCACCCCACTT
CGCACGCCTGTTAGTTTTCCTATTGCTGCCGCTGCGGTTGCAGCCTTGCG
AAATGGTAACCGTTCCAGCGTCGCGACCGTCGCCTGAAGCTGGCTCTCCC
ATTAGTCGCGCTACTCGCAACAAGCCCTCTCGTGTTTTGCATGAGCCCTT
CGTATCCCCAGAGTTCGGGGCAAGCCGTGCCACCGGGCCTTCACGACTTG
GTGGTGGGCCTGACAGCAGTGATCGTGGGGAAATATCTCCGGCAGAATTC
CGTGGGGATGGCGATACAATCGATCGACGCTCTTGGCAGGGGCAGCAGGC
TCTGCTGCCTCAGGCGGCTCCGCTTTACACCGTGAGTGCAACAAGCGTGG
CCGGCAGCGGTGGTGGCGTAGTCTCAGCTCCTCCTTCCGCCCTCTCAAAT
TCGATGCTACCCGGAAAGAGGCTGGAAGCTGTGGTCGCGGGATACACGTC
AGTTGTTGGACCACCTTCGGCACGCCGTTCAGCCCCTGCAGCGGGGTCGC
AGGAGGTGCAGTTTCAAACCAAGTCCGACAAAACACCATCGCCATACCCT
TCTAGTAGGGAAATCGAGGTTGAGGGTACCCTAAATACGTCACTGGATCC
ACCTCAAGATCTATCACCATTTGTCACGGAGGCCACCTGTACTTGGGGAC
AGGAGCTAGGAGCGATAGTGGGACAGGCTGTGAATGATTCTTCCCGCACG
GCCAATCGTCGGTTGGGAATACAATCTTCAGGTGGACAACCAACCCTAAC
AACAACCGGGCTTTTCCCGCAGATGATGACCCTCAGGTAAGATACAGCAC
TACTTTGCGAGGCTCGCAAAGTCAGACGGAAAACCAAAAGAACAAAACTA
AGCACGGCATGGGCACGTTGGGGCACTTCCAAGCTCGCAACACGAAACCT
ATTAACAAAACTCACGGGGCATAGCTACTGCTGCTGTAGATGGGCATGTT
TTACCCAGCACTTTGTTACTCCGTGCCAGGTGAGACCTACATGAGACAAG
CGATTACCTGTCGGGGGAAAAATGACAACAGTTTATCTGTGGCTTTCAGA
TGAACATGTAAATACCTTCCACGGCATGGTATTAGGGAAATACAGGTCTA
TCGATACCACACACAAGGAAATATGTGCCGAAACAAGCGATTGTCGTTTG
AACGCCATGAATTTAAATCCGCTTTTTCTCGCGTCACATCACCAGGTTCT
CGAGCTCCGTTCGTGTAAAATCAGTGCACGTGAGGGCGAGTTCGGTGCTA
AACCTTGTTGTGCACTCCAGCGAAGGCCTGCTCGGCTCTGTGCATGCCGA
CAGCAAGGCGGTGACACTACCGGCCGATGGCCAGCACAAGTGGCCAAGAG
AGGAGGGATCAGGACGAGACATCGATGTCGATGTGCGGGGCGCCAAGAGG
TGTGCTGCCTGTTACTTCTGAAACGTGGACGTAAAGGCAGTTGGGATGGT
CGATTCAGCCAAGGTTTCGTTGATGGCATAGCGATGAACGACCACGCATG
AATCATGGTGCGGATAGTGATTGTGCAAGTGCGTTCTCTCTTCAGCCTCG
GTATGTGTGCTGTGTCTGCTTCTGCATCACAATGTGTTTTTGGAAAACAG
AATAACAGAGCACTACGTAACGAACTTGGTCTACCCTCCCCGCAAAATGA
CTGTCATATCACCCTTGATTACCTACCGTTTGCAGTGTTCTCTTCCACGC
TTTGCGTACCGTTGTCTCACTCAGGGATGAACCATGTCGACGTCAAGTAC
AGTTTCAAGGTGTACTGATGGATTGACAAAAGTCGTTCGCACACTTAAGC
CCCAACAACACATGTTGCCGCCAATTTACCATCGCTGTCACCCCTTTGCT
GATCGTGGTTCACCCCCCCTCCCTCCGTGAACAGCTTTGAAAATACCCGG
AGCATCACCGTCGTCATAACTGCCGGTAGTGGAACCTTCTGTTCCATCCA
CCGAATCTATGCCCGGGGTTTTCGGGCGTAGAAGGAGCAATCAAGCATGG
TCGGACAAGCATGGTCACAGCGAGCGAGACAGCAACCTGGTTAGTTTTTC
GCATGGGGGGATGAAACCAGGGGACGTGTCGTTCCCCTCGTGCAAGAAGA
ATTGTTCTGAAATGAATGTCGCTGTCACTTTGGGACCTGGATTAAGGCAC
TCGTGCTACTTGTGTCAGCAGAATGACACCCTGACATCGTCTTGTTGGCA
GGTGCACAACATCTAAAGCGAAGGAAAAAAAACTTTGACAGAAATGCTCG
GTCGGCAACCGGTGGCTGAGCGCTTCGATAAATTATTTCGCAATTGGCTG
ACGTTTGGACATGGCTTCGAACCTCAGTGCAGTCACACGAAGTCGGATTT
GTCTCACAAAAAGTAACAACAACGTGGAAAGCGATCAATTCGTGTATACG
CAAGAGTTCGACTTTACGGTCGACGATGTAAAGAAACCGCTGAGTCCTTC
GCGCGATCGAAATCAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56:31248..33764+

>mRNA_Ecto-sp13_S_contig56.15923.1 ID=mRNA_Ecto-sp13_S_contig56.15923.1|Name=mRNA_Ecto-sp13_S_contig56.15923.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1035bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56:31248..33764+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAACCGTTCCAGCGTCGCGACCGTCGCCTGAAGCTGGCTCTCCCAT
TAGTCGCGCTACTCGCAACAAGCCCTCTCGTGTTTTGCATGAGCCCTTCG
TATCCCCAGAGTTCGGGGCAAGCCGTGCCACCGGGCCTTCACGACTTGGT
GGTGGGCCTGACAGCAGTGATCGTGGGGAAATATCTCCGGCAGAATTCCG
TGGGGATGGCGATACAATCGATCGACGCTCTTGGCAGGGGCAGCAGGCTC
TGCTGCCTCAGGCGGCTCCGCTTTACACCGTGAGTGCAACAAGCGTGGCC
GGCAGCGGTGGTGGCGTAGTCTCAGCTCCTCCTTCCGCCCTCTCAAATTC
GATGCTACCCGGAAAGAGGCTGGAAGCTGTGGTCGCGGGATACACGTCAG
TTGTTGGACCACCTTCGGCACGCCGTTCAGCCCCTGCAGCGGGGTCGCAG
GAGGTGCAGTTTCAAACCAAGTCCGACAAAACACCATCGCCATACCCTTC
TAGTAGGGAAATCGAGGTTGAGGGTACCCTAAATACGTCACTGGATCCAC
CTCAAGATCTATCACCATTTGTCACGGAGGCCACCTGTACTTGGGGACAG
GAGCTAGGAGCGATAGTGGGACAGGCTGTGAATGATTCTTCCCGCACGGC
CAATCGTCGGTTGGGAATACAATCTTCAGGTGGACAACCAACCCTAACAA
CAACCGGGCTTTTCCCGCAGATGATGACCCTCAGGTTCTCGAGCTCCGTT
CGTGTAAAATCAGTGCACGTGAGGGCGAGTTCGGTGCTAAACCTTGTTGT
GCACTCCAGCGAAGGCCTGCTCGGCTCTGTGCATGCCGACAGCAAGGCGG
TGACACTACCGGCCGATGGCCAGCACAAGTGGCCAAGAGAGGAGGGATCA
GGACGAGACATCGATGTCGATGTGCGGGGCGCCAAGAGCTTTGAAAATAC
CCGGAGCATCACCGTCGTCATAACTGCCGGTAGTGGAACCTTCTGTTCCA
TCCACCGAATCTATGCCCGGGGTTTTCGGGCGTAG
back to top