mRNA_Ecto-sp13_S_contig5599.15920.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5599.15920.1
Unique NamemRNA_Ecto-sp13_S_contig5599.15920.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5599.15920.1 vs. uniprot
Match: D7FLT0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT0_ECTSI)

HSP 1 Score: 305 bits (781), Expect = 2.420e-104
Identity = 161/172 (93.60%), Postives = 168/172 (97.67%), Query Frame = 1 
Query:    1 MKSYTLLLAALITIALVCPSCAKGFGRKRTMARQGDQEPMAATVSTRDKDLAKMRAYKAAAEEMGEDADELAMLKRVEEITEKLLRESFPDAYKPAPAKRPMAVESDDVWENGTVVRYLARIMALLLAAAGLYAWNDKDVRQKPDRTIKDTPPRSSRTSSRSSSASDSRKMR 516
            MKSYTLLLAALI IALVCPSCAKGFGRKRTMARQGDQEPMAATVSTRDK+LAKMRAYKAA +EMGEDADELAMLKRVEEIT+KLLRESFPDAYKPAPAKRP AV+SDDVWENGTVVRYLAR+MALLLAAAGLYAWNDKDVR+KPDRTIKDTPPRSSR S+RSSSASDSRKMR
Sbjct:    1 MKSYTLLLAALIAIALVCPSCAKGFGRKRTMARQGDQEPMAATVSTRDKELAKMRAYKAAVQEMGEDADELAMLKRVEEITDKLLRESFPDAYKPAPAKRPKAVDSDDVWENGTVVRYLARVMALLLAAAGLYAWNDKDVREKPDRTIKDTPPRSSRPSARSSSASDSRKMR 172
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5599.15920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLT0_ECTSI2.420e-10493.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5599contigEcto-sp13_S_contig5599:3399..7462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size519
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001380.1
Cds size519
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463775.844198-CDS-Ecto-sp13_S_contig5599:3398..34691681463775.844198-CDS-Ecto-sp13_S_contig5599:3398..3469Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5599 3399..3469 +
1681463775.8557394-CDS-Ecto-sp13_S_contig5599:5882..60061681463775.8557394-CDS-Ecto-sp13_S_contig5599:5882..6006Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5599 5883..6006 +
1681463775.8711188-CDS-Ecto-sp13_S_contig5599:6765..68761681463775.8711188-CDS-Ecto-sp13_S_contig5599:6765..6876Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5599 6766..6876 +
1681463775.8832097-CDS-Ecto-sp13_S_contig5599:7249..74621681463775.8832097-CDS-Ecto-sp13_S_contig5599:7249..7462Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5599 7250..7462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5599.15920.1prot_Ecto-sp13_S_contig5599.15920.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5599 3399..7462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5599.15920.1

>prot_Ecto-sp13_S_contig5599.15920.1 ID=prot_Ecto-sp13_S_contig5599.15920.1|Name=mRNA_Ecto-sp13_S_contig5599.15920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=173bp
MKSYTLLLAALITIALVCPSCAKGFGRKRTMARQGDQEPMAATVSTRDKD
LAKMRAYKAAAEEMGEDADELAMLKRVEEITEKLLRESFPDAYKPAPAKR
PMAVESDDVWENGTVVRYLARIMALLLAAAGLYAWNDKDVRQKPDRTIKD
TPPRSSRTSSRSSSASDSRKMR*
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mRNA from alignment at Ecto-sp13_S_contig5599:3399..7462+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5599.15920.1 ID=mRNA_Ecto-sp13_S_contig5599.15920.1|Name=mRNA_Ecto-sp13_S_contig5599.15920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4064bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5599:3399..7462+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTCCTACACGCTGCTACTGGCTGCTCTTATCACCATTGCCCTTGT
GTGTCCATCATGCGCCAAGGGGTGAGTGGCGCTGTCGACGGGAGACGGAT
GGCATACGCATCATGGTGAACGGTTCACGCGGCATATTTACCTGCCTGCC
GTGGTTCAATTTCGTCTGGTTCTCTGAAACGTTCCCACACGCATAATCTC
CACGCCCTGCTGCTTCCTGTTAGGGGAAGACTGCATCGTTACGACACACC
CCGTGGTGTCTTATAGCCGTCTCTCTCTCTGAAGCCGGTGGGTAGCGTGT
GAGGCAGAGGAAGACGAAAGAACCCGAAAGCACTGTCCTCTCTGACTGAC
CTTCCGTTAGAGAGGAGCTAACCGCGACACCCAAATATGAAATGCATGTA
TTCGGCTCCACCGTACCTGTGGGCCATGACACTGCCGTACGATCACGCCA
GTGCTTCCCTACCGCTTCATCGCCTGTGTGTTTATGTTTGCACAGGCCAA
CGGCGAAACACAGGGAGCATTCCCTCTGTTGTATGTGTTTTATTTTCCAC
ACCATATTTGCCGGTGGCTTGCCAGTCGAGCTCGACCGAGGACAGATGGT
CCTTGTTGGAACAAATTTCCCCCCTGCCCCGTGGACTTAATCTACAATCT
TGTAGTGTAGACACTACCCGCTGAACGCTAGAGATCTCGGGACAGCCTTG
ACTCCTGGGCCTAATGTCGTCCGAATCGAACGCCACAGCAAAGCTGATAA
TTTCGAAAATTCGCCTCACCAGATGCGGCGGAGTTGGAAATGCTTCCGAT
TTCGTTCCGTTGTTTTCGCGCTTGACGCTTGACGCTCACACCCACACACT
CCGCGTAGGAGCGTACATGCAGCAGGCGATTTTTCCCATCAACATGGGTC
TATTGAAAATCGAGGAGTACAGATCAATACGTCCGAAGTCACAGATTCAG
TGCAAACGTGTCGCATCAAGGGCTTCAAGCGAACTACACAGCAGTAGTCG
AGACAACTTTTGTTGTAGCTCTTCAATTCAGGTCACATGTACTGCTGTAC
AGACGCACCCCCAGGTCTACAGACCATTTACACGTACAGAAACCTCCCAA
TGTCTCAAAAGCAGAGCAGCTATTTCACCGCGTGGGCTACAAGCAAACCA
ATTCACAGATAAAGAATTCGAGTCCTTGGCAAGGGCTACAATACATCGAC
CTTGGCGAAGAAACCAGGAATTTTCAGTTTTCAAGGGATTCATGCATGCA
TGCGTGGGTGCACCGAGGGTTGTCACCGATGACGTTTTAGCTGTACTCGT
ATGACCCAGGTTGGCGCGTTAAATGCGTACCGAAAGATGCGGACTGGCGC
CAGAATATATGGGGGACGAGAACGCACGCACACGTGCATGCACACACACT
CACACACAGACTGGGAGCGCTGCATATTCCAACGACATANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGCAGTACATATGCCCGT
CAATAGTTGAGAAATCCGAACGCCCCTTTCCGCCGACTCACGACGTTGCC
TGTGCAACGAGAAAAACATGGCACATGTGTTGTATGAATGCTACTTCCCT
AAACCTGTACCATCTCGTTGAGCGTTACAGGCGCACGTCTGACTGCTTGA
TCCGCTACCTGGTGGTACTACACAACGGTAGTCAAGTGTTTTCAAAGGGG
ACGGGCAAATGGGGCTATTGAGCCCCCACAGAATGGGGGGGAAGGGGGAG
TATGAGAACACTCGCACGCTAGAGCTCACTACTGTACATGCCAGCCTTAC
ATTGCATGGGTGCAGATCATACGTACACGCACGACCCCCCCCTGTCCGGG
TAGCCGATTGCAAGCGTTTTACTTGTGGGCGTCTTTCCGTTGGTGAGTCG
GTTGGCGCGATCGAGTTGCTTATTGCAGAGCCACCACAATAGAACCTCCT
GTTCCAAGAACTCTAAATCAATCCGGAGACTGGGCATCGCCGTCTGCTCT
CCTTCTCGGCCCTCCTGCTGAGGGGCCCCGCGGGCGAGAACAGGGCACCT
TCTCGTTTTTTTTCGTCCCGCTTGCTGTGAAGCTGGCACCTTGGCCGGCC
GGTTGGCGCGCTCGATTCTGATGAATGACCCCCCCACCCATTCGGTTGGG
AGGCAGGAAGGCGGCGCCTTCTTCAGATGTATCACGGCAGCCAGCGCGAG
CGAAGAGTGAGCGACGGGAATTGACCGAAAACCAAGCCCCTTCTGTCGCT
CTCTGCTCGTCTTTGAACAGCGGTAGGGACATCGAGCTCGTGCGCTGCTG
TTTTTTCCCGATGTGCGGCTTTACTTGCCAACGGGATGATGGTCATTCTC
GGTTGGTTGCCTTCACCATATCTTTACCCCCACGAAAGTTATTTTCTTTC
TTTTGAAGCGAAAGTGCAGTCAACTGTCACTGGTTCGCTGGCATATGTAG
ACTAAATAAACTCGCTGTTTCCTCCTCTCTGCAGGTTTGGGAGGAAGAGG
ACCATGGCGAGGCAGGGTGACCAGGAGCCCATGGCCGCAACCGTGAGCAC
TCGAGACAAGGACCTCGCGAAGATGCGGGCCTACAAGGCTGCTGCCGAGG
AGATGGGGGTGCGTACTGCTGTAGGGAGGTTGGTGGCGCGACTCTTGCTT
GTGTGCACGTGACACGCGCGCACGATTTCACCCCCTTTTTGTCCTCCGCT
CTCCAAGTGGCTTGATAGGTTCGGGCGAGGGATTCCGTGAATCTGCGATG
GTTTTGTGGAACTGCGGCGTGTGACTCTGCCTGTTGACATGTTGGCTGCT
GTGTCTTGGGAGCGTACGATATTGATGCCGGGAGATACAGCATACAAGGA
TGTGCTAGCTTCGGCTGGAGATTCGTACCAACTACGTTGGACAAATGCTC
AGAAACCTGGCGTACCAAACACCTACTAATATGTGCAGCCACCATGAAGC
ACGTCTTTTTTCCCCCACCTAAGAGCAACGAAAACTCATTGGCGCACGAC
ACCCATATCGGTTCGTTCTTTTCTCTCGTTGACTTCTATTCCCCCGCCGC
GTTGTGCGGAGTTCGGTTTTGGTCGGTAGAGAATGAAATCGCCACATTCG
ACGACCAGCACCGAGAAGATTGAGTCGCATGTCCTCTTGTTTTGTTTCAT
TTTTGCAGTCCAGTATGTAAGCTGTCCATGGTGTTATGCATGTTCGACTC
TACAAGCCAACGCCTGCGAAGATGATCGAGCAAGTGGGAAAGACTCTAGT
GACTTATTGATTTCTTCTTACAGTTTGTGATTTCTTCATGGTTCATGGTG
GTTGTAAGCGTCTACTCGCGGTGACGACCCTCGAATCGTTTTGTCGGCGT
TCATCTCTTGATCACAGGAAGACGCCGACGAGCTGGCCATGCTGAAACGG
GTAGAGGAGATCACCGAAAAGCTATTGAGGGAGTCGTTTCCGGACGCGTA
CAAGCCCGCCCCAGCTAAGAGGCCCATGGTGAGGGGAAACACCATTGTTT
ATGCAATCGTCGATCAAGAGGATACGATAGAAAGTGTATGGAGTAGCCCT
GCCATTGACCCAATACTTTGTTCGAAACGCAAACCTTTGGACGCTTCCTT
CTCGCAAATTTAAACCATGTCACACTAACGTCGTGAGGATAGTGCTGAGA
ACGGGACGATTGGACGCTAGACACACTGCTGTTGTCATTCAGCGTGAATA
AACAGTTTTACATATTTTTCGTCGTTTCAATGCCGGTTTCTTCTGTCATT
CGGTTTCCCGGCTGCTACTATCACTACTGATGCTGTTGCACGGGCCGTGA
CGCCCCCCCCACCCGCGCGCGCCATGCTGCCTATTCTTGCCAAAAATAAA
GGCCGTGGAAAGCGACGATGTCTGGGAGAACGGGACGGTTGTGCGTTACC
TGGCCCGCATCATGGCCTTACTGCTTGCGGCGGCGGGACTGTACGCATGG
AACGACAAGGACGTGCGACAGAAGCCGGACCGCACCATCAAGGACACTCC
GCCGAGATCGTCAAGAACGTCGTCGCGGTCGTCGTCTGCCTCGGACTCGA
GGAAGATGCGATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5599:3399..7462+

>mRNA_Ecto-sp13_S_contig5599.15920.1 ID=mRNA_Ecto-sp13_S_contig5599.15920.1|Name=mRNA_Ecto-sp13_S_contig5599.15920.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=519bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5599:3399..7462+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTCCTACACGCTGCTACTGGCTGCTCTTATCACCATTGCCCTTGT
GTGTCCATCATGCGCCAAGGGGTTTGGGAGGAAGAGGACCATGGCGAGGC
AGGGTGACCAGGAGCCCATGGCCGCAACCGTGAGCACTCGAGACAAGGAC
CTCGCGAAGATGCGGGCCTACAAGGCTGCTGCCGAGGAGATGGGGGAAGA
CGCCGACGAGCTGGCCATGCTGAAACGGGTAGAGGAGATCACCGAAAAGC
TATTGAGGGAGTCGTTTCCGGACGCGTACAAGCCCGCCCCAGCTAAGAGG
CCCATGGCCGTGGAAAGCGACGATGTCTGGGAGAACGGGACGGTTGTGCG
TTACCTGGCCCGCATCATGGCCTTACTGCTTGCGGCGGCGGGACTGTACG
CATGGAACGACAAGGACGTGCGACAGAAGCCGGACCGCACCATCAAGGAC
ACTCCGCCGAGATCGTCAAGAACGTCGTCGCGGTCGTCGTCTGCCTCGGA
CTCGAGGAAGATGCGATAG
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