mRNA_Ecto-sp13_S_contig5598.15918.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5598.15918.1
Unique NamemRNA_Ecto-sp13_S_contig5598.15918.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5598.15918.1 vs. uniprot
Match: A0A6H5L705_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L705_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 7.790e-14
Identity = 54/108 (50.00%), Postives = 63/108 (58.33%), Query Frame = 3 
Query:  198 LVWVAYHDLVRYAIPLALVTNVAHI*GVGCITTMAVLEVVVAAMEMAVPTFPAMPPRNDLPSKAVVSSSNNNSYSTPGGEGGRLGAKGDGSRR*RPTSPVPGSRRKRP 521
            L+ VAYHDLVRYAIPLAL+ NVA+I GVGCITT         A        P   P  +   + +   +   S       GGRLGA+GDGSRR RP SPVPGSR +RP
Sbjct:  189 LLLVAYHDLVRYAIPLALLANVAYIYGVGCITTDGXXXXXXQADLFG--NAPRKRPAVEGDGQQLQQHTRRRS------SGGRLGAEGDGSRRSRPPSPVPGSRLQRP 288
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5598.15918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L705_9PHAE7.790e-1450.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5598contigEcto-sp13_S_contig5598:2757..6249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size523
Hectar predicted targeting categorymitochondrion
Exons4
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463775.5863097-CDS-Ecto-sp13_S_contig5598:2756..28411681463775.5863097-CDS-Ecto-sp13_S_contig5598:2756..2841Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5598 2757..2841 -
1681463775.5952556-CDS-Ecto-sp13_S_contig5598:3323..34851681463775.5952556-CDS-Ecto-sp13_S_contig5598:3323..3485Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5598 3324..3485 -
1681463775.607081-CDS-Ecto-sp13_S_contig5598:4495..45991681463775.607081-CDS-Ecto-sp13_S_contig5598:4495..4599Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5598 4496..4599 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463775.616147-UTR-Ecto-sp13_S_contig5598:4599..46231681463775.616147-UTR-Ecto-sp13_S_contig5598:4599..4623Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5598 4600..4623 -
1681463775.6251688-UTR-Ecto-sp13_S_contig5598:6101..62491681463775.6251688-UTR-Ecto-sp13_S_contig5598:6101..6249Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5598 6102..6249 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5598.15918.1prot_Ecto-sp13_S_contig5598.15918.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5598 2757..4599 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5598.15918.1

>prot_Ecto-sp13_S_contig5598.15918.1 ID=prot_Ecto-sp13_S_contig5598.15918.1|Name=mRNA_Ecto-sp13_S_contig5598.15918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
MRSLWVTTAGLGGLPRPRPLRDTAGAGHQCCAHLGCRVHHDDGGAGGGGG
GDGDGRADLSGNAPTKRLAVEGGGQQQQQQQLQHTRRRRREVGRQRRRQP
AIEAHVPRARLKTEAA*
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mRNA from alignment at Ecto-sp13_S_contig5598:2757..6249-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5598.15918.1 ID=mRNA_Ecto-sp13_S_contig5598.15918.1|Name=mRNA_Ecto-sp13_S_contig5598.15918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3493bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5598:2757..6249- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGCCTGGTCGTTCACAGACATGGCAGGCAACGAATGATGCTCCAGAGC
TCTGGATGAGCGTCGGTTCAGTGAAACCTCGGCTACGAAAGGATTGACGC
AGCTGGCGGGTTGAGTGGGATGCAGGCTGAAGAAACGAAGAGGGCAAGGT
GTGAGGCCGGATACTGTAGTCTGCTGCATGAGTACCCTGGCAGGTGACAT
CCGTCTCTTTCTCAGGCGGCGGCTGTGTTGCATCCTCATCCTGCGAAAAA
CAGGCAGTGACTGCGGTGTTCGGAGAAAGGACAATCATTTGTTGCGAGAA
CTGGCCGCTTCAGTTGTTGGAAATAGTGGGTCGCAGACGAGAGCACATCA
ACACTACGACGCGGACGGAGGCTCGAGGAAGCGTAACACGATTTCTACCT
ACGCGAAAATGGATCACTTTTTTTTTTTTTCCTGCAGCAGTGCAAGTCGT
CCACGCCCAACACTTGAATGTGTCCATGGGCTGGAATCCGGATTCTCCCT
GGAACACGGTTTTTCCCTTGGGCTGTCTACCTTTTTTCGCAGATCGGTGG
CACCTGGTTCATGGTTTCTGTTCGGTGTGTTGACCATGGAACGATGTGGT
GCGGTGTGGTAGCGCTGGCGCTAGCAACCGTTCTTAGCGTCGGTATGATC
GTGCGCTTGCTTGTGGAAACCCCATCGGCAGAGGAGGTAGGACCCTTGAT
GCCACTCTGAAGCAGAGGATTCAAACACGGCAGCGTTGCTGCACAGAGAG
CACCGGTCAGCCTTCGATACCCAGAAACTACATGTTTTGCGTTGAGTCGA
CCATGTGGATAGCCATGAAAGAGAAAGTCCGCCATATGATGATTATGATC
GGTTTCGTGTTGTGCTTTTGCCAAAAGGGAATTCGTTCGTGCTGGGATAT
TCATTCCCCCTCGTCGTGAGATGTTCGTATCACGGTTGGTGATGCGCCTG
TGGCTGGCTCGCAGCGGAGTCGTCTGCTGTAGCTCGCGATGAACACCGGC
CCCCGAAGTGCGTGAACTACAGTAGGAATGAGAGAGATAGGCATGGTGTG
TCGACGTGGGGTCGCGTCCTTTTCCCTACGGGTAGCATGGATCCCTAGGT
CCTGGTGTCCGTGATTGTAGCGCCGACTTCGGTTGCTTGGCCTGGTCGTG
GATACGGCACCTCTCTGCAACGCTGGGACGGACGAGCTGTAGGGAGGACC
CAAGCGATATGCCGTGTGACACTTTGAACCCATTGCCATTTTGTCCTGGG
CGTTTCAGCTGTGGGTAGAGCCGCATAGATATTTTGCTTGGGAGCACAAA
ACAAGTACGAAATTTGCTCCCGCTAACGTGCCGCACCACCTACGTTGCCT
ACCAATGCATGGTGGGATCGAATCGGGGGGGGGAGGGGGGGGGAGACGAT
GGACGAGCGCGGTCACGGGAAGTCCGGACGACCATGCCCGCCACGCCTGC
GCTGCCTCTGACATCCCTCTCCCCGTCCCCTACTTTACCGTGTTGTACGG
TGTATGTGTGTTTATTTAATGAGCATCCACTACGCTAAAGCCGATGAAAT
GAAGGCGTCAGCCGGTCTTGTAGCAGAATGAAAAGCACGAACCTTCTCCA
ATCAAGCGTGTGTGTGTGCGTACCAGGGTCTGTTGCAATGGAAAAACCGT
ATGCGGAGCCTGTGGGTGACAACCGCTGGTCTGGGTGGCCTACCACGACC
TCGTCCGTTACGCGATACCGCTGGCGCTGGTCACCAATGTTGCGCACATT
TAGGGTGAGCTGACGACTGAGTTTGTCTTCACCTCGTTCATCTCGTTCAT
GACGTCTCTGCTTAGTGGACGGTTTTTTTTAGACGTTTTTACCCCCTCCT
TTCCGCTCGTGCTTGTTGGTGGTATGTATCTGAGGAAGACAAGAACGAAG
AATGGCGTGTTTTGTACGCGGTTGGATGGTCTCGCGCCCTCCGGCGGTCT
CGATGAGTAGCACTTACCTTTCTCTCTGTCTCTCCTCTGTGTACATATAT
CGTGATCGCTGTATTTCTCTTTATCTATTCCTGTCTCCCGCTTTCTCATG
TGAATGAAAAGTGAACACTCGTCCAAATGTGCAGAGTGCGTGCGATGTGT
GTGTGTGTGGCTCCATGCTGCGAGGAAAAGGATTCTTGGTTCATGGTTTG
ATCGTCATCGTCGTTTTGGAATATCATCTACCTTCCATTGTTCGGTCGGG
AACGGACACCATCGCCTGCTGTATGCGTATATGTGGGGAAGCTAGGCCGT
GTGTGATACCGATGTCGGGAAATCCCAAATCGAAAAATCTGAGATTTCTT
TCGGAGGATATTCGAGTTCATCATAACTTTTCTTGAAAGTGTCCCTTCAA
CAATGTCAAGAGTGAGCTCTACTGAAAACCCAGACCAAGGCTTACTTTTT
TTTGGATTTTGACCAATCCAAGCTCGATTCTTGAAGCTCGTCACTACCGA
GCCTTACCAAGCTGGTCCGCCGGTCGCGCATGTTCATGCCCCGGGGATGC
ATGGATGCATGGATACGTGAGGTTGGCTTCCCCATCCGTCGCTCGACGAT
ATAAACTGTTTCGTCAAGGTTATAAACGCCCCCCCCGAATACCATACGGC
ACTCTGCGCTTGGTGACGTGAGAGCCTGGTCTGGTGAAAACCCGGCGTGC
TCCGTCCCGACTTTGTAGGGATGCGAGGTCAATGGCCTAACGACTAAGGC
TTGCGCGTCTACGACTACACGCCCCCCCCCCCCCTTGAAACGGCAAAAAA
TGTTGATCTTGAAGGTGTAGGGTGCATCACGACGATGGCGGTGCTGGAGG
TGGTGGTGGCGGCGATGGAGATGGCCGTGCCGACCTTTCCGGCAATGCCC
CCACGAAACGACTTGCCGTCGAAGGCGGTGGTCAGCAGCAGCAACAACAA
CAGCTACAGCACACCAGGCGGCGAAGGTGAGACAGACAGAGAAACAGAGA
GGGAGAGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAC
CACGAAACACTATCCTAGCCATAGGCAAAACCCGAACGTTCAACACCTAT
CCTAGCCATTGGAAACTTTGGGTACGCTGCGGTCGGTGTTCGGGTCAACG
GGCTCAAGGGTCGGCCTGCCTGCCTGACCGCTGACTGCTTCCCGTATGGC
CTCCCTAAACCCCAAATGCACGCAGTATAGCCAATCCACTTTAGCTTCTT
TCAGCTTTTTTGCTGCCCGGTCTCCTGCGGGGCACGTTTCCGGCGGCCAC
TGACCCTTGCTTTTTATTCCAGTTGACCCTCTCAGGTCCCACCGACCATA
TTCAACCCAGGCGAGAATGCCCCCCTCCTCTGCTGATGACACACCCCGGC
TCGAAATCTCTCCACAACTCGGTGTCTTGATCATATATATGTTCCCACTG
CATCTCAGGCGGGAGGTTGGGCGCCAAAGGCGACGGCAGCCGGCGATAGA
GGCCCACGTCCCCCGTGCCCGGCTCAAGACGGAAGCGGCCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5598:2757..6249-

>mRNA_Ecto-sp13_S_contig5598.15918.1 ID=mRNA_Ecto-sp13_S_contig5598.15918.1|Name=mRNA_Ecto-sp13_S_contig5598.15918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5598:2757..6249- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGAGCCTGTGGGTGACAACCGCTGGTCTGGGTGGCCTACCACGACC
TCGTCCGTTACGCGATACCGCTGGCGCTGGTCACCAATGTTGCGCACATT
TAGGGTGTAGGGTGCATCACGACGATGGCGGTGCTGGAGGTGGTGGTGGC
GGCGATGGAGATGGCCGTGCCGACCTTTCCGGCAATGCCCCCACGAAACG
ACTTGCCGTCGAAGGCGGTGGTCAGCAGCAGCAACAACAACAGCTACAGC
ACACCAGGCGGCGAAGGCGGGAGGTTGGGCGCCAAAGGCGACGGCAGCCG
GCGATAGAGGCCCACGTCCCCCGTGCCCGGCTCAAGACGGAAGCGGCCTA
A
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