mRNA_Ecto-sp13_S_contig55973.15915.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig55973.15915.1
Unique NamemRNA_Ecto-sp13_S_contig55973.15915.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig55973.15915.1 vs. uniprot
Match: A0A6H5KGS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGS2_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 7.540e-16
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = -3 
Query:   12 PRASTIGSAAWAKSRKCATTSSLRTASRWVAVPVGLRLLRRVPLVPPRTVLAEWLPWAPAAAAWGG 209
            P+  TIGSAAWA+SR CATTSS+R ASRW+A P+GLRLL RVPL+PP  VLA+    A AAA  GG
Sbjct:  622 PQPKTIGSAAWARSRICATTSSVRAASRWMASPLGLRLLLRVPLMPPPMVLADH---AAAAAGMGG 684
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BLAST of mRNA_Ecto-sp13_S_contig55973.15915.1 vs. uniprot
Match: A0A6H5JWG3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG3_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.020e-15
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = -3 
Query:    3 WVAVPVGLRLLRRVPLVPPRTVLAEWLPWAPAAAAWGGFME 125
            WVAVPVGL LL RVPLVPPRTV+ EWLPWAPA AAWGGFME
Sbjct:  627 WVAVPVGLHLLPRVPLVPPRTVVEEWLPWAPAPAAWGGFME 667
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BLAST of mRNA_Ecto-sp13_S_contig55973.15915.1 vs. uniprot
Match: A0A6H5KKU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKU5_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 8.340e-14
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = -2 
Query:  109 CSVNTPQGVNYWECGMGKIEEMCDHFEPAYGVTVGGGSG 225
            C++   +G NYWECGMGKIEEMCDHFEPA+GVTVGGGSG
Sbjct:  639 CNILQCEGGNYWECGMGKIEEMCDHFEPAHGVTVGGGSG 677
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BLAST of mRNA_Ecto-sp13_S_contig55973.15915.1 vs. uniprot
Match: A0A6H5KUI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUI6_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 9.640e-13
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = -3 
Query:    3 PVGLRLLRRVPLVPPRTVLAEWLPWAPAAAAWGGFME 113
            P+ +RLLRRVPLVPP TVL EWL WAPAAAAWGGFM+
Sbjct:    5 PLWVRLLRRVPLVPPPTVLPEWLRWAPAAAAWGGFMK 41
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BLAST of mRNA_Ecto-sp13_S_contig55973.15915.1 vs. uniprot
Match: A0A6H5JG63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG63_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.410e-9
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = -2 
Query:  109 CSVNTPQGVNYWECGMGKIEEMCDHFEPAYGVTVGGGSG 225
            C +   Q  NYWECGMGK+E+MCDHFE A GVTV G SG
Sbjct:   79 CKILQRQAENYWECGMGKVEDMCDHFERARGVTVDGNSG 117
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BLAST of mRNA_Ecto-sp13_S_contig55973.15915.1 vs. uniprot
Match: A0A6H5JHB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHB8_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 8.540e-9
Identity = 24/34 (70.59%), Postives = 27/34 (79.41%), Query Frame = -2 
Query:  124 CSVNTPQGVNYWECGMGKIEEMCDHFEPAYGVTV 225
            C +   QG NYWECGMGK+E+MCDHFE A GVTV
Sbjct:  543 CKILQRQGENYWECGMGKVEDMCDHFERARGVTV 576
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig55973.15915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KGS2_9PHAE7.540e-1666.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWG3_9PHAE1.020e-1587.80Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKU5_9PHAE8.340e-1479.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUI6_9PHAE9.640e-1381.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG63_9PHAE1.410e-966.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHB8_9PHAE8.540e-970.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig55973contigEcto-sp13_S_contig55973:4..508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size298
Hectar predicted targeting categoryother localisation
Exons2
Cds size276
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463775.5120108-UTR-Ecto-sp13_S_contig55973:3..91681463775.5120108-UTR-Ecto-sp13_S_contig55973:3..9Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig55973 4..9 +
1681463775.5416915-UTR-Ecto-sp13_S_contig55973:492..5081681463775.5416915-UTR-Ecto-sp13_S_contig55973:492..508Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig55973 493..508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463775.523065-CDS-Ecto-sp13_S_contig55973:9..2171681463775.523065-CDS-Ecto-sp13_S_contig55973:9..217Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig55973 10..217 +
1681463775.5324166-CDS-Ecto-sp13_S_contig55973:424..4921681463775.5324166-CDS-Ecto-sp13_S_contig55973:424..492Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig55973 425..492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig55973.15915.1prot_Ecto-sp13_S_contig55973.15915.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig55973 10..492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig55973.15915.1

>prot_Ecto-sp13_S_contig55973.15915.1 ID=prot_Ecto-sp13_S_contig55973.15915.1|Name=mRNA_Ecto-sp13_S_contig55973.15915.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
MKPPHAAAAGAQGSHSANTVRGGTSGTRRSRRSPTGTATHRDAVRRLEVV
AHFLDFAHAALPIVDALGCVHTAICYTGCRVSCIAVVSARL*
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mRNA from alignment at Ecto-sp13_S_contig55973:4..508+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig55973.15915.1 ID=mRNA_Ecto-sp13_S_contig55973.15915.1|Name=mRNA_Ecto-sp13_S_contig55973.15915.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=505bp|location=Sequence derived from alignment at Ecto-sp13_S_contig55973:4..508+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCTCCATGAAGCCCCCCCATGCCGCCGCCGCCGGCGCCCAGGGAAGCCA
CTCCGCCAACACCGTTCGCGGCGGCACGAGCGGTACCCGCCGCAGCAGGC
GCAGCCCCACCGGAACCGCCACCCACCGTGACGCCGTACGCAGGCTCGAA
GTGGTCGCACATTTCCTCGATTTTGCCCATGCCGCACTCCCAATAGTTGA
CGCCCTGGGGTGTGCGGTATTTCGGGAGGGAGGAGGTACGTGAGGCAAGG
TAAGTGGGGCTTTTCCAATTGTGATACACCCGAAAACCCAATACGAACTA
ACCAGAAACTGATAGGCCGCGATCTGTGATGAAGGAGCAACACATCGCAT
CATGAGCACCACCAACCTGCGCGGTACCCCATACATCACCAAACACAAAC
GCCATACATTGTTGTACTCACTTCACACTGCAATATGTTACACGGGATGC
CGTGTTTCTTGCATTGCGGTGGTTTCGGCCCGCCTCTAGCGCCCGCGCCC
TCGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig55973:4..508+

>mRNA_Ecto-sp13_S_contig55973.15915.1 ID=mRNA_Ecto-sp13_S_contig55973.15915.1|Name=mRNA_Ecto-sp13_S_contig55973.15915.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig55973:4..508+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCCCCCCCATGCCGCCGCCGCCGGCGCCCAGGGAAGCCACTCCGC
CAACACCGTTCGCGGCGGCACGAGCGGTACCCGCCGCAGCAGGCGCAGCC
CCACCGGAACCGCCACCCACCGTGACGCCGTACGCAGGCTCGAAGTGGTC
GCACATTTCCTCGATTTTGCCCATGCCGCACTCCCAATAGTTGACGCCCT
GGGGTGTGTTCACACTGCAATATGTTACACGGGATGCCGTGTTTCTTGCA
TTGCGGTGGTTTCGGCCCGCCTCTAG
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