mRNA_Ecto-sp13_S_contig5597.15914.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5597.15914.1
Unique NamemRNA_Ecto-sp13_S_contig5597.15914.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5597.15914.1 vs. uniprot
Match: D8LF68_ECTSI (Serine/threonine-protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF68_ECTSI)

HSP 1 Score: 462 bits (1188), Expect = 3.520e-162
Identity = 231/244 (94.67%), Postives = 237/244 (97.13%), Query Frame = 1
Query:    1 FAAPQLLDGGDILDAVAGLHSYTEHDARQIAIALLRALKHVHDEVGCVHRDLRPEKLLMARDPSGGSQPGIGKRVKVAGWGRSKRLPSSGEVPGEHCFGNRAFSAPEMILEEPHGKPADMFAVGALLYTLLSGAPPRVATLSSAVNPKAPDTATGPAWAGVSAEAKGLVGALMTPRGPAARFSAEEALGHEWIRAGKVELKARSLDAVLKGARVLGWTRWQNEERTRLDGGTRGSGIPRASSMF 732
            F   +LLDGGDILDAVAGLHSYTEHDARQIAIALL+ALKHVHDEVGCVHRDLRPEKLLMARDPSGG QPGIGKRVKVAGWGRSKRLP SGEVPGEHCFGNRAFSAPEMILEEPHGKPADMFAVGALLYTLLSG+PPRVATLSSAVNPKAPDTATGPAWAGVSAEAKGLVGALMTPRGPAARFSAE+ALGHEWIRAGK ELK+RSLDAVLKGARVLGWTRWQNEER+RLDGG RGSGIPRASSMF
Sbjct:  118 FLVVELLDGGDILDAVAGLHSYTEHDARQIAIALLQALKHVHDEVGCVHRDLRPEKLLMARDPSGGPQPGIGKRVKVAGWGRSKRLPPSGEVPGEHCFGNRAFSAPEMILEEPHGKPADMFAVGALLYTLLSGSPPRVATLSSAVNPKAPDTATGPAWAGVSAEAKGLVGALMTPRGPAARFSAEKALGHEWIRAGKGELKSRSLDAVLKGARVLGWTRWQNEERSRLDGGARGSGIPRASSMF 361          
BLAST of mRNA_Ecto-sp13_S_contig5597.15914.1 vs. uniprot
Match: A0A6H5L7G7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G7_9PHAE)

HSP 1 Score: 455 bits (1171), Expect = 9.610e-159
Identity = 229/240 (95.42%), Postives = 233/240 (97.08%), Query Frame = 1
Query:   13 QLLDGGDILDAVAGLHSYTEHDARQIAIALLRALKHVHDEVGCVHRDLRPEKLLMARDPSGGSQPGIGKRVKVAGWGRSKRLPSSGEVPGEHCFGNRAFSAPEMILEEPHGKPADMFAVGALLYTLLSGAPPRVATLSSAVNPKAPDTATGPAWAGVSAEAKGLVGALMTPRGPAARFSAEEALGHEWIRAGKVELKARSLDAVLKGARVLGWTRWQNEERTRLDGGTRGSGIPRASSMF 732
            +LLDGGDILDAVA LHSYTEHDARQIAIALL+ALKHVHDEVGCVHRDLRPEKLLMARDPSGG QP IGKRVKVAGWGRSKRLP SGEVPGEHCFGNRAFSAPEMILEEPHGKPADMFAVGALLYTLLSG+PPRVATLSSAVNPKAPDTATGPAWAGVSAEAKGLVGALMTPRGPAARFSAE+ALGHEWIRAGK ELKARSLDAVLKGARVLGWTRWQNEERTRLDG  RGSGIPRASSMF
Sbjct:  178 ELLDGGDILDAVAALHSYTEHDARQIAIALLQALKHVHDEVGCVHRDLRPEKLLMARDPSGGPQPRIGKRVKVAGWGRSKRLPLSGEVPGEHCFGNRAFSAPEMILEEPHGKPADMFAVGALLYTLLSGSPPRVATLSSAVNPKAPDTATGPAWAGVSAEAKGLVGALMTPRGPAARFSAEKALGHEWIRAGKGELKARSLDAVLKGARVLGWTRWQNEERTRLDGSARGSGIPRASSMF 417          
BLAST of mRNA_Ecto-sp13_S_contig5597.15914.1 vs. uniprot
Match: A0A077WPV2_9FUNG (Protein kinase domain-containing protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A077WPV2_9FUNG)

HSP 1 Score: 99.0 bits (245), Expect = 1.230e-20
Identity = 66/194 (34.02%), Postives = 104/194 (53.61%), Query Frame = 1
Query:   13 QLLDGGDILDAVAGLHSYTEHDARQIAIALLRALKHVHDEVGCVHRDLRPEKLLMARDPSGGSQPGIGKRVKVAGWGRSKRLPSSGEVPGEHCFGNRAFSAPEMILEEPHGKPADMFAVGALLYTLLSGAPP-----RVATLSSAVNPKAPDTATGPAWAGVSAEAKGLVGALMTPRGPAARFSAEEALGHEWI 579
            +L  GG++   +    SYTE DA  +   +L+ L ++HD+   VHRD++PE LL      G +       +K+  +G SK L +  ++    C G   + APE++L+  HGKP D+++VG ++YTLLSG  P     + A   S ++ K         W  +S +AK L+  L+T   P+ R +A+EAL H WI
Sbjct:  109 ELASGGELFQQLLQQGSYTEKDASNLVRQMLQGLAYLHDQ-DIVHRDIKPENLLFDTKEEGAT-------LKITDFGLSKILKNHNDILMTAC-GTPGYVAPEILLQSGHGKPVDLWSVGVIMYTLLSGYTPFWGEDQTALFESIMSGKYEYDEE--YWEDISDDAKDLIDRLLTYH-PSKRITAKEALEHPWI 290          
BLAST of mRNA_Ecto-sp13_S_contig5597.15914.1 vs. uniprot
Match: A0A0X8HV22_9SACH (HFR065Wp n=1 Tax=Eremothecium sinecaudum TaxID=45286 RepID=A0A0X8HV22_9SACH)

HSP 1 Score: 98.2 bits (243), Expect = 5.710e-20
Identity = 66/198 (33.33%), Postives = 103/198 (52.02%), Query Frame = 1
Query:    1 FAAPQLLDGGDILDAVAGLHSYTEHDARQIAIALLRALKHVHDEVGCVHRDLRPEKLLMARDPSGGSQPGIGKRVKVAGWGRSKRLPSSGEVPGEHCFGNRAFSAPEMILEEPHGKPADMFAVGALLYTLLSGAPPRVAT-----LSSAVNPKAPDTATGPAWAGVSAEAKGLVGALMTPRGPAARFSAEEALGHEWI 579
            +   QL  GG++ D +     +TEHDA +I + +L A+ ++H +   VHRDL+PE +L   DPS  SQ      + V+ +G +K L S  +V      G+  + APE++    HGKP D++++G + YTLLSG  P +A      L      +       P W  +S +AK  + + +    P+ R SA+E L H WI
Sbjct:  127 YIVTQLATGGELFDRILQKGKFTEHDAVKIVVQILSAVSYMHSK-NVVHRDLKPENVLYL-DPSDDSQ------LVVSDFGIAKELSSENQVI-HRAAGSMGYVAPEVLTTSGHGKPCDVWSLGVITYTLLSGYSPFIAESADGFLEEVTRDENTVVFHAPYWNNISTDAKDFIRSALI-LDPSERPSADELLKHSWI 314          
BLAST of mRNA_Ecto-sp13_S_contig5597.15914.1 vs. uniprot
Match: A0A2P4XY16_9STRA (CAMK protein Kinase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XY16_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.010e-19
Identity = 66/194 (34.02%), Postives = 100/194 (51.55%), Query Frame = 1
Query:   13 QLLDGGDILDAVAGLHSYTEHDARQIAIALLRALKHVHDEVGCVHRDLRPEKLLMARDPSGGSQPGIGKRVKVAGWGRSKRLPSSGEVPGEHCFGNRAFSAPEMILEEPHGKPADMFAVGALLYTLLSGAPPRVATLSSAVNPK--APDTATGPA--WAGVSAEAKGLVGALMTPRGPAARFSAEEALGHEWIR 582
            +LL+GG++ DA+     ++E +A  +A  +L A++H+H+  G VHRDL+PE +L+A       +  +   VK+  +G +K L            G   + APE++L  P+G   DM++ G L Y LL G  P  AT     N K  A    T P   W GVS  A   +  ++    P+AR +A EAL H W+R
Sbjct:  178 ELLEGGELFDAIVDKGRFSEREAVHVARCILSAIQHMHER-GVVHRDLKPENMLLAVSSRRCRRQDVALEVKIIDFGFAKVLKEG--ATSTSFLGTGGYLAPEILLRRPYGTSVDMWSFGVLTYLLLCGRLPFAATTQLRPNQKIQALYKLTFPKRYWRGVSPVAIDFLQRVLVLN-PSARLTATEALNHPWLR 367          
BLAST of mRNA_Ecto-sp13_S_contig5597.15914.1 vs. uniprot
Match: G0V7J8_NAUCC (Protein kinase domain-containing protein n=1 Tax=Naumovozyma castellii (strain ATCC 76901 / BCRC 22586 / CBS 4309 / NBRC 1992 / NRRL Y-12630) TaxID=1064592 RepID=G0V7J8_NAUCC)

HSP 1 Score: 96.7 bits (239), Expect = 1.640e-19
Identity = 69/198 (34.85%), Postives = 105/198 (53.03%), Query Frame = 1
Query:    1 FAAPQLLDGGDILDAVAGLHSYTEHDARQIAIALLRALKHVHDEVGCVHRDLRPEKLLMARDPSGGSQPGIGKRVKVAGWGRSKRLPSSGEVPGEHCFGNRAFSAPEMILEEPHGKPADMFAVGALLYTLLSGAPPRVAT-----LSSAVNPKAPDTATGPAWAGVSAEAKGLVGALMTPRGPAARFSAEEALGHEWI 579
            +   QL  GG++ D +     +TE DA  I + LL A+K++H +   VHRDL+PE +L   DPS  SQ      + +A +G +K L S+ ++  +   G+  + APE++ +E HGKP D++++G + YTLLSG  P +A      L      + P     P W  +S EAK  +   +T   P  R SAEE +   WI
Sbjct:  113 YIVTQLATGGELFDRIIKKGKFTEVDAVNIMVQLLDAVKYIHSQ-NIVHRDLKPENVLYL-DPSDESQ------LVIADFGIAKELKSNDDLIFKGA-GSLGYVAPEVLTKEGHGKPCDIWSLGVITYTLLSGYSPFIAESVEGFLEECTRSRYPVQFHKPYWDSISDEAKDFILKALTID-PEERPSAEELMNDPWI 300          
BLAST of mRNA_Ecto-sp13_S_contig5597.15914.1 vs. uniprot
Match: A0A7H8QMB7_9EURO (Protein kinase domain-containing protein n=2 Tax=Talaromyces sect. Islandici TaxID=2752542 RepID=A0A7H8QMB7_9EURO)

HSP 1 Score: 96.3 bits (238), Expect = 2.450e-19
Identity = 68/201 (33.83%), Postives = 105/201 (52.24%), Query Frame = 1
Query:    1 FAAPQLLDGGDILDAVAGLHSYTEHDARQIAIALLRALKHVHDEVGCVHRDLRPEKLLMARDPSGGSQPGIGKRVKVAGWGRSKRLPSSGEVPGEHCFGNRAFSAPEMILEEPHGKPADMFAVGALLYTLLSGAPP-RVATLSSAVNPKAPDTATGPA------WAGVSAEAKGLVGALMTPRGPAARFSAEEALGHEWIR 582
            +   +L  GG++ D +     +TE DA Q    +L A+ ++H+    VHRDL+PE LL            +   + +A +G +K L  SG+V      G+  ++APE++L+E HGKPADM+++G + YTLL G  P R   +   +     +   G        W GVS +AK  + +L+TP     R SAEEAL H W++
Sbjct:   88 YIVTELATGGELFDRICEYGKFTEKDASQTIKQILGAVHYLHER-NIVHRDLKPENLLYLTSD-------LQSSLVLADFGIAKMLEHSGDVLTSMA-GSFGYAAPEVMLKEGHGKPADMWSMGVITYTLLCGYSPFRSENMRDLIE----ECRAGHVQFHSRYWGGVSDDAKDFIKSLLTPD-QNKRASAEEALQHPWLK 274          
BLAST of mRNA_Ecto-sp13_S_contig5597.15914.1 vs. uniprot
Match: A0A7S2LV12_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LV12_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.300e-19
Identity = 73/204 (35.78%), Postives = 111/204 (54.41%), Query Frame = 1
Query:   25 GGDILDAVAGLHSYTEHDARQIAIALLRALKHVHDEVGCVHRDLRPEKLLMARDPSGGSQPGIGKRVKVAGWGRSKRLPSSGEVPGEHCFGNRAFSAPEMILEEPHGKPADMFAVGALLYTLLSGAPPRVATLSSAVNPK---APDTATGPAWAGVSAEAKGLVGALMTPRGPAARFSAEEALGHEWIRAGKVELKARSLDAVL 627
            GGD+ D ++    YTE +AR +A+ LL+A+  +H     VHRD++PE LL+    S          +K+A +G + +LP SG++    C G  +F APE++  + + + ADM++VG  LY LL G PP     S+++  K   A        W  VS +AK L+  L+T      R SA+EAL  +WI+    +L  RSLD+ L
Sbjct:  122 GGDVYDRLSKRVFYTEENARDLAVNLLKAVHALHS-FAIVHRDIKPENLLLKSMESDTD-------IKIADFGFATKLPPSGKLL-TRC-GTPSFVAPELLFAKGYNESADMWSVGVTLYILLGGYPPFQGKDSNSLFRKIRSADYKFHDKYWKSVSKDAKQLIIDLLTTDFNR-RLSAKEALNSKWIKTSGEDLSERSLDSAL 314          
BLAST of mRNA_Ecto-sp13_S_contig5597.15914.1 vs. uniprot
Match: A0A662XUJ5_9STRA (Protein kinase domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XUJ5_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.620e-19
Identity = 68/196 (34.69%), Postives = 103/196 (52.55%), Query Frame = 1
Query:   13 QLLDGGDILDAVAGLHSYTEHDARQIAIALLRALKHVHDEVGCVHRDLRPEKLLMARDPSGGSQPGI-GKRVKVAGWGRSKRLPSSGEVPGEHCF-GNRAFSAPEMILEEPHGKPADMFAVGALLYTLLSGAPPRVATLSSAVNPKAPD----TATGPAWAGVSAEAKGLVGALMTPRGPAARFSAEEALGHEWIR 582
            +LL+GG++ DA+     ++E +A  +A  +L A++H+H+  G VHRDL+PE +L+A       + G  G  VK+  +G +K L   GE      F G   + APE++L +P+  P DM++ G L Y LL G  P  AT     N K       T     W GVS  A   +  ++    P+ R +A+EAL H W+R
Sbjct:  255 ELLEGGELFDAIVEKGRFSEREAVHVARCILSAMQHMHER-GVVHRDLKPENMLLAVSSRRRRRQGTAGLDVKIIDFGFAKVL---GEGATSTSFLGTGGYLAPEILLRQPYAAPVDMWSFGVLAYLLLCGRLPFAATTQLRPNQKVSALYKLTFPRKYWQGVSPMAIDFLQRVLVLN-PSGRLTAKEALNHPWLR 445          
BLAST of mRNA_Ecto-sp13_S_contig5597.15914.1 vs. uniprot
Match: UPI001E8EE404 (calcium/calmodulin-dependent protein kinase n=1 Tax=Talaromyces proteolyticus TaxID=1131652 RepID=UPI001E8EE404)

HSP 1 Score: 95.5 bits (236), Expect = 4.780e-19
Identity = 69/201 (34.33%), Postives = 104/201 (51.74%), Query Frame = 1
Query:    1 FAAPQLLDGGDILDAVAGLHSYTEHDARQIAIALLRALKHVHDEVGCVHRDLRPEKLLMARDPSGGSQPGIGKRVKVAGWGRSKRLPSSGEVPGEHCFGNRAFSAPEMILEEPHGKPADMFAVGALLYTLLSGAPP-RVATLSSAVNPKAPDTATGPA------WAGVSAEAKGLVGALMTPRGPAARFSAEEALGHEWIR 582
            +   +L  GG++ D +     +TE DA Q    +L A+ ++HD    VHRDL+PE LL     S  S       + +A +G +K L  S +V      G+  ++APE++L+E HGKPADM+++G + YTLL G  P R   L   +     +   G        W GVS +AK  +  L+ P    +R +AEEAL H W++
Sbjct:   93 YIVTELATGGELFDRICEYGKFTEKDASQTIRQILGAVHYLHDR-NIVHRDLKPENLLYLTSDSQSS-------LVLADFGIAKMLEHSSDVLTSMA-GSFGYAAPEVMLKEGHGKPADMWSMGVITYTLLCGYSPFRSENLPDLIE----ECRGGHVQFHSRYWGGVSEDAKDFIKTLLNPD-QNSRATAEEALEHRWLK 279          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5597.15914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF68_ECTSI3.520e-16294.67Serine/threonine-protein kinase n=1 Tax=Ectocarpus... [more]
A0A6H5L7G7_9PHAE9.610e-15995.42Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A077WPV2_9FUNG1.230e-2034.02Protein kinase domain-containing protein n=2 Tax=L... [more]
A0A0X8HV22_9SACH5.710e-2033.33HFR065Wp n=1 Tax=Eremothecium sinecaudum TaxID=452... [more]
A0A2P4XY16_9STRA1.010e-1934.02CAMK protein Kinase n=1 Tax=Phytophthora palmivora... [more]
G0V7J8_NAUCC1.640e-1934.85Protein kinase domain-containing protein n=1 Tax=N... [more]
A0A7H8QMB7_9EURO2.450e-1933.83Protein kinase domain-containing protein n=2 Tax=T... [more]
A0A7S2LV12_9STRA3.300e-1935.78Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A662XUJ5_9STRA3.620e-1934.69Protein kinase domain-containing protein n=2 Tax=N... [more]
UPI001E8EE4044.780e-1934.33calcium/calmodulin-dependent protein kinase n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5597contigEcto-sp13_S_contig5597:337..1608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score463.4
Seed ortholog evalue6.6e-128
Seed eggNOG ortholog2880.D8LF68
Model size735
KEGG koko:K08794
KEGG Pathwayko04921,ko04925,map04921,map04925
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
Ec32 ortholog descriptionserine/threonine-protein kinase
Ec32 orthologEc-06_001870.1
EC2.7.11.17
Cds size735
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463775.4638078-CDS-Ecto-sp13_S_contig5597:336..6401681463775.4638078-CDS-Ecto-sp13_S_contig5597:336..640Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5597 337..640 +
1681463775.477436-CDS-Ecto-sp13_S_contig5597:1177..16081681463775.477436-CDS-Ecto-sp13_S_contig5597:1177..1608Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5597 1178..1608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5597.15914.1prot_Ecto-sp13_S_contig5597.15914.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5597 337..1608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5597.15914.1

>prot_Ecto-sp13_S_contig5597.15914.1 ID=prot_Ecto-sp13_S_contig5597.15914.1|Name=mRNA_Ecto-sp13_S_contig5597.15914.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=245bp
FAAPQLLDGGDILDAVAGLHSYTEHDARQIAIALLRALKHVHDEVGCVHR
DLRPEKLLMARDPSGGSQPGIGKRVKVAGWGRSKRLPSSGEVPGEHCFGN
RAFSAPEMILEEPHGKPADMFAVGALLYTLLSGAPPRVATLSSAVNPKAP
DTATGPAWAGVSAEAKGLVGALMTPRGPAARFSAEEALGHEWIRAGKVEL
KARSLDAVLKGARVLGWTRWQNEERTRLDGGTRGSGIPRASSMF*
back to top

mRNA from alignment at Ecto-sp13_S_contig5597:337..1608+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5597.15914.1 ID=mRNA_Ecto-sp13_S_contig5597.15914.1|Name=mRNA_Ecto-sp13_S_contig5597.15914.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1272bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5597:337..1608+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTGCTGCACCGCAGCTCCTCGATGGGGGCGACATCCTCGATGCGGTGGC GGGGCTCCACTCCTACACCGAGCACGACGCGCGGCAGATCGCTATCGCCC TTTTGCGGGCCCTGAAGCACGTGCACGACGAGGTCGGCTGCGTTCACCGA GACTTGAGGCCCGAGAAGCTCCTGATGGCCAGGGACCCGTCGGGGGGCTC GCAGCCGGGGATCGGCAAGAGGGTCAAGGTAGCCGGGTGGGGGAGATCTA AGAGGCTTCCGTCCAGCGGGGAGGTCCCTGGAGAACACTGCTTCGGCAAC CGAGGTAGGAGGGATAGGGGAGAGAGATGATGTGCGCCGGGTATGATCGG CAGTGTAATTTTGGGGGAGATTTTTTGGACGCCGGCAGGTAGTTTCGTTT TGTCGTCGAGTGCGTGTATGTACTGTAGCCAGCCGCGTGCAGATCATGCC CATGGGATTTGTGCCGCGCGCCGGAATGAGTGGGTGGTGTGATGGTGATC ATCTAGACTCGCGGAGACGAAAGAACGCTGCGCTTGCGAGAGCTACCATC GTTTTTGTGCGCCCAAGATACGGTCGCGATCGCCGAAGATCGCCTGATCA TCATGCGCGGACACATACTCTTGTCAAGAATTCTCTCCAACCCGAAATTC GCGCTGCCGTGTTTCCCTGCCCACAGTACTGTAGCGCTGGAAAAAGTCCC TTGACGACAAAGAAACCGTCTCAGCTGAACCACGTGTTCGATGATCTGAC GACCTCCGTTCGCTATCCACCGATGCAACGTATCCCCCTAGTGAAACCTT GTTCCAACCTTATCCCTCTCTCCCCACTGCCGCCCTCGCAGCGTTCTCGG CGCCCGAGATGATCCTCGAGGAGCCGCACGGCAAGCCAGCCGACATGTTC GCCGTCGGGGCGCTCCTCTATACCCTCCTCTCCGGCGCGCCGCCCCGCGT GGCCACCCTCTCGTCCGCCGTCAACCCTAAGGCGCCGGACACCGCCACCG GCCCCGCCTGGGCGGGCGTTTCGGCGGAGGCCAAGGGCCTGGTGGGGGCG CTCATGACGCCGAGGGGGCCGGCGGCTAGGTTTTCCGCGGAGGAGGCGCT GGGGCACGAGTGGATCAGGGCGGGCAAGGTGGAGCTGAAGGCGAGGTCGC TGGACGCCGTGCTGAAGGGCGCGAGGGTGTTGGGCTGGACCCGGTGGCAG AACGAGGAGAGAACCAGGCTGGACGGCGGCACGCGAGGCAGCGGGATCCC GAGAGCTTCGAGCATGTTTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5597:337..1608+

>mRNA_Ecto-sp13_S_contig5597.15914.1 ID=mRNA_Ecto-sp13_S_contig5597.15914.1|Name=mRNA_Ecto-sp13_S_contig5597.15914.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5597:337..1608+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTGCTGCACCGCAGCTCCTCGATGGGGGCGACATCCTCGATGCGGTGGC
GGGGCTCCACTCCTACACCGAGCACGACGCGCGGCAGATCGCTATCGCCC
TTTTGCGGGCCCTGAAGCACGTGCACGACGAGGTCGGCTGCGTTCACCGA
GACTTGAGGCCCGAGAAGCTCCTGATGGCCAGGGACCCGTCGGGGGGCTC
GCAGCCGGGGATCGGCAAGAGGGTCAAGGTAGCCGGGTGGGGGAGATCTA
AGAGGCTTCCGTCCAGCGGGGAGGTCCCTGGAGAACACTGCTTCGGCAAC
CGAGCGTTCTCGGCGCCCGAGATGATCCTCGAGGAGCCGCACGGCAAGCC
AGCCGACATGTTCGCCGTCGGGGCGCTCCTCTATACCCTCCTCTCCGGCG
CGCCGCCCCGCGTGGCCACCCTCTCGTCCGCCGTCAACCCTAAGGCGCCG
GACACCGCCACCGGCCCCGCCTGGGCGGGCGTTTCGGCGGAGGCCAAGGG
CCTGGTGGGGGCGCTCATGACGCCGAGGGGGCCGGCGGCTAGGTTTTCCG
CGGAGGAGGCGCTGGGGCACGAGTGGATCAGGGCGGGCAAGGTGGAGCTG
AAGGCGAGGTCGCTGGACGCCGTGCTGAAGGGCGCGAGGGTGTTGGGCTG
GACCCGGTGGCAGAACGAGGAGAGAACCAGGCTGGACGGCGGCACGCGAG
GCAGCGGGATCCCGAGAGCTTCGAGCATGTTTTGA
back to top