mRNA_Ecto-sp13_S_contig5592.15907.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5592.15907.1
Unique NamemRNA_Ecto-sp13_S_contig5592.15907.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5592.15907.1 vs. uniprot
Match: D8LNI8_ECTSI (EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.330e-14
Identity = 44/82 (53.66%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:  190 HQLQSHACAISSRSAG*QGGDTPLHQACLGPREGLDAAVDVLLRSGADETTLNNNGASPAELLDVRHDEEDVNNPAPQDEID 435
            H L  H   +  R      G TPLH+ C    EGL+AAVD+LLR GADETTLN  GASPA+ L  R+ +   +NPAPQDEID
Sbjct:    2 HALFQHGAQVGVRG---NQGYTPLHETCWERHEGLEAAVDMLLRWGADETTLNYGGASPADFLGGRYGKVIGHNPAPQDEID 80
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BLAST of mRNA_Ecto-sp13_S_contig5592.15907.1 vs. uniprot
Match: A0A6H5JWW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW4_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 9.450e-10
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:  172 RSCRVRHQLQSHACAISSRSAG*QGGDTPLHQACLGPREGLDAAVDVLLRSGADETTLNNNGASPAELLDVRHDEED 402
            R+ +  + L  H  +++++      G+TPLH AC     GL+A VD+LLR GADET LNN+G +PA+LLD   +E D
Sbjct:  531 RNLKAMNTLLGHGASLTAQDVD---GNTPLHLACYRQDSGLEAPVDLLLRWGADETALNNDGKTPADLLDEHDNEND 604
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BLAST of mRNA_Ecto-sp13_S_contig5592.15907.1 vs. uniprot
Match: A0A6H5JRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY1_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.930e-6
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:  247 GDTPLHQACLGPREGLDAAVDVLLRSGADETTLNNNGASPAELLDVRHDEED 402
            G TPLH AC     G++A VD+LLR GADET L+N+  +PA+LLD   +E D
Sbjct:  257 GGTPLHWACYWQVRGVEATVDLLLRWGADETALDNDSKTPADLLDEDDNEND 308
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5592.15907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNI8_ECTSI1.330e-1453.66EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JWW4_9PHAE9.450e-1044.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRY1_9PHAE1.930e-653.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5592contigEcto-sp13_S_contig5592:48..484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size437
Hectar predicted targeting categorymitochondrion
Exons1
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463774.7033887-UTR-Ecto-sp13_S_contig5592:47..731681463774.7033887-UTR-Ecto-sp13_S_contig5592:47..73Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5592 48..73 +
1681463774.723438-UTR-Ecto-sp13_S_contig5592:382..4841681463774.723438-UTR-Ecto-sp13_S_contig5592:382..484Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5592 383..484 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463774.7146888-CDS-Ecto-sp13_S_contig5592:73..3821681463774.7146888-CDS-Ecto-sp13_S_contig5592:73..382Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5592 74..382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5592.15907.1prot_Ecto-sp13_S_contig5592.15907.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5592 74..382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5592.15907.1

>prot_Ecto-sp13_S_contig5592.15907.1 ID=prot_Ecto-sp13_S_contig5592.15907.1|Name=mRNA_Ecto-sp13_S_contig5592.15907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MVLTCTPVITTASPRSTLLHSTIKRVPSICSSRLGPTSMSRRMMDLHLSQ
LPRTPPVAKPCMRYFITERRLTRRRYATASGLLGASRRARCRRGCAAAIG
SR*
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mRNA from alignment at Ecto-sp13_S_contig5592:48..484+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5592.15907.1 ID=mRNA_Ecto-sp13_S_contig5592.15907.1|Name=mRNA_Ecto-sp13_S_contig5592.15907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=437bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5592:48..484+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGACATTGTTGAAGCTATCGTAGAGCATGGTGCTGACGTGTACGCCAGTG
ATAACGACGGCTTCACCGCGCTCCACGCTGTTGCACAGCACGATCAAGCG
CGTGCCATCGATATGCTCATCACGGCTGGGGCCGACGTCGATGTCAAGAA
GAATGATGGACTTACACCTCTCGCAGTTGCCGCGTACGCCACCAGTTGCA
AAGCCATGCATGCGCTATTTCATCACGGAGCGCAGGTTGACAAGGAGGAG
ATACGCCACTGCATCAGGCTTGCTTGGGGCCTCGCGAAGGGCTAGATGCC
GCCGTGGATGTGCTGCTGCGATCGGGAGCAGATGAAACAACCTTGAACAA
TAATGGAGCAAGCCCGGCGGAATTGCTCGATGTAAGACATGACGAGGAGG
ATGTCAACAATCCGGCGCCGCAGGACGAGATCGACTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5592:48..484+

>mRNA_Ecto-sp13_S_contig5592.15907.1 ID=mRNA_Ecto-sp13_S_contig5592.15907.1|Name=mRNA_Ecto-sp13_S_contig5592.15907.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5592:48..484+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCTGACGTGTACGCCAGTGATAACGACGGCTTCACCGCGCTCCAC
GCTGTTGCACAGCACGATCAAGCGCGTGCCATCGATATGCTCATCACGGC
TGGGGCCGACGTCGATGTCAAGAAGAATGATGGACTTACACCTCTCGCAG
TTGCCGCGTACGCCACCAGTTGCAAAGCCATGCATGCGCTATTTCATCAC
GGAGCGCAGGTTGACAAGGAGGAGATACGCCACTGCATCAGGCTTGCTTG
GGGCCTCGCGAAGGGCTAGATGCCGCCGTGGATGTGCTGCTGCGATCGGG
AGCAGATGA
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