mRNA_Ecto-sp13_S_contig55899.15903.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig55899.15903.1
Unique NamemRNA_Ecto-sp13_S_contig55899.15903.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig55899.15903.1 vs. uniprot
Match: D8LCU6_ECTSI (ADP-ribose pyrophosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCU6_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 1.110e-50
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 1
Query:    1 FRYQWPRPAVTVDCLIYALDEGKPWILLIKRKNAPFKGGWALPGGFVDQNEGLDAAARRELEEETGVTNRTMVQTGAYG 237
            FRYQWPRPAVTVDCLIYALDEGKPWILLIKRKN PFKGGWALPGGFVDQNEGLDAAARRELEEETGVTNRTMVQTGAYG
Sbjct:   98 FRYQWPRPAVTVDCLIYALDEGKPWILLIKRKNDPFKGGWALPGGFVDQNEGLDAAARRELEEETGVTNRTMVQTGAYG 176          
BLAST of mRNA_Ecto-sp13_S_contig55899.15903.1 vs. uniprot
Match: A0A6V1NPN0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NPN0_HETAK)

HSP 1 Score: 110 bits (274), Expect = 4.430e-28
Identity = 46/79 (58.23%), Postives = 62/79 (78.48%), Query Frame = 1
Query:    1 FRYQWPRPAVTVDCLIYALDEGKPWILLIKRKNAPFKGGWALPGGFVDQNEGLDAAARRELEEETGVTNRTMVQTGAYG 237
            ++Y+WPRP+VT D +I+A++E  P++LLIKR N PF+G WALPGGF+D  EGL+A A REL+EETGV    + Q GA+G
Sbjct:   35 YKYRWPRPSVTTDIVIFAVEEAIPYVLLIKRGNPPFQGSWALPGGFLDLGEGLEACAARELQEETGVAGLPLAQVGAFG 113          
BLAST of mRNA_Ecto-sp13_S_contig55899.15903.1 vs. uniprot
Match: I2CQQ6_NANGC (Nudix hydrolase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CQQ6_NANGC)

HSP 1 Score: 106 bits (264), Expect = 9.880e-27
Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    1 FRYQWPRPAVTVDCLIYALDEGKPWILLIKRKNAPFKGGWALPGGFVDQNEGLDAAARRELEEETGVTNRTMVQTGAYG 237
            F Y++PRP+VTVD L++ LDE +  ILL++R N PFKG WALPGGFVDQ+EGLD+AA REL EET + + +  Q G YG
Sbjct:   47 FCYKYPRPSVTVDTLVFCLDETQMKILLVQRGNEPFKGAWALPGGFVDQDEGLDSAAARELREETALDSISFAQVGTYG 125          
BLAST of mRNA_Ecto-sp13_S_contig55899.15903.1 vs. uniprot
Match: A0A7S2XUX9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUX9_9STRA)

HSP 1 Score: 103 bits (258), Expect = 6.660e-26
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    1 FRYQWPRPAVTVDCLIYALDEGKPWILLIKRKNAPFKGGWALPGGFVDQNEGLDAAARRELEEETGVTNRTMVQTGAY 234
            + Y+WPRP+VT D  ++ +++G  W+LLIKR   PF+G WALPGGF++  EGLDA + RELEEET ++   MVQ GA+
Sbjct:   23 YHYRWPRPSVTTDSAVFTIEDGAAWVLLIKRLKEPFQGCWALPGGFLEDMEGLDACSARELEEETSISGLPMVQVGAF 100          
BLAST of mRNA_Ecto-sp13_S_contig55899.15903.1 vs. uniprot
Match: A0A1G2YDB5_9BACT (Nudix hydrolase domain-containing protein n=1 Tax=Planctomycetes bacterium GWF2_50_10 TaxID=1801959 RepID=A0A1G2YDB5_9BACT)

HSP 1 Score: 102 bits (253), Expect = 7.740e-26
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    7 YQWPRPAVTVDCLIYALDEGKPWILLIKRKNAPFKGGWALPGGFVDQNEGLDAAARRELEEETGVTNRTMVQTGAYG 237
            Y+WPRP VTVD +I+ LD GKP +LLI+R N PFKG WA+PGGFVD +E L  AA+REL+EET +TN  + Q   +G
Sbjct:    8 YEWPRPMVTVDAVIFKLDRGKPRVLLIQRGNEPFKGQWAVPGGFVDMDEDLLDAAKRELQEETSLTNIELEQFHTFG 84          
BLAST of mRNA_Ecto-sp13_S_contig55899.15903.1 vs. uniprot
Match: A0A8A4TKI6_9BACT (NUDIX domain-containing protein n=1 Tax=Sulfidibacter corallicola TaxID=2818388 RepID=A0A8A4TKI6_9BACT)

HSP 1 Score: 103 bits (256), Expect = 1.750e-25
Identity = 48/82 (58.54%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    1 FRYQWPRPAVTVDCLIYALDEGKPWILLIKRKNAPFKGGWALPGGFVDQNEGLDAAARRELEEETGVTNRTMVQTGAYGALD 246
            F Y +PRP+VTVDC+++  DEG   ILLI+R+  PFK  WALPGGFV   E L+ AARRELEEETG+ N  + Q   YGA+D
Sbjct:    3 FTYHYPRPSVTVDCVVFGFDEGDLKILLIQRRLDPFKDYWALPGGFVKMEESLEEAARRELEEETGIHNLYLEQLYTYGAVD 84          
BLAST of mRNA_Ecto-sp13_S_contig55899.15903.1 vs. uniprot
Match: A0A3P1SLV2_9BACT (NUDIX hydrolase n=2 Tax=Prevotella sp. OH937_COT-195 TaxID=2491051 RepID=A0A3P1SLV2_9BACT)

HSP 1 Score: 100 bits (249), Expect = 2.520e-25
Identity = 43/82 (52.44%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    1 FRYQWPRPAVTVDCLIYALDEGKPWILLIKRKNAPFKGGWALPGGFVDQNEGLDAAARRELEEETGVTNRTMVQTGAYGALD 246
            + Y++P PAVTVDC ++A ++G+  +LLI+RKN P KG WALPGGF++ +E  + AA REL+EETG++ + + QTGAY  +D
Sbjct:    4 YTYKYPHPAVTVDCAVFAKEDGETKVLLIERKNEPCKGMWALPGGFMNIDESAEEAAVRELQEETGISVKEVAQTGAYSRVD 85          
BLAST of mRNA_Ecto-sp13_S_contig55899.15903.1 vs. uniprot
Match: A0A1G3RL27_9SPIR (NUDIX hydrolase n=1 Tax=Spirochaetes bacterium RIFOXYC1_FULL_54_7 TaxID=1802198 RepID=A0A1G3RL27_9SPIR)

HSP 1 Score: 102 bits (254), Expect = 4.050e-25
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    1 FRYQWPRPAVTVDCLIYALDEGKPWILLIKRKNAPFKGGWALPGGFVDQNEGLDAAARRELEEETGVTNRTMVQTGAYG 237
            + YQ+P PAVTVDC I+ LDE K  +LLI+R   PF G WALPGGFV  +E L+AAARRELEEETGV    + Q GA+G
Sbjct:   10 YSYQYPHPAVTVDCAIFGLDEDKLKLLLIQRDLEPFAGSWALPGGFVRMDEDLEAAARRELEEETGVRKVFIEQVGAFG 88          
BLAST of mRNA_Ecto-sp13_S_contig55899.15903.1 vs. uniprot
Match: A0A2N1R4E6_9SPIR (NUDIX hydrolase n=1 Tax=Spirochaetae bacterium HGW-Spirochaetae-7 TaxID=2013839 RepID=A0A2N1R4E6_9SPIR)

HSP 1 Score: 101 bits (252), Expect = 8.420e-25
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 1
Query:    1 FRYQWPRPAVTVDCLIYALDEGKPWILLIKRKNAPFKGGWALPGGFVDQNEGLDAAARRELEEETGVTNRTMVQTGAYG 237
            + Y++P PAVTVDC I+ LDEGK  +LLI+R   PF G WALPGGFV  +E L+ AARRELEEETGV    + Q GA+G
Sbjct:   12 YSYEYPHPAVTVDCAIFGLDEGKLKLLLIQRDLEPFAGAWALPGGFVKLDEDLETAARRELEEETGVKRVFIDQVGAFG 90          
BLAST of mRNA_Ecto-sp13_S_contig55899.15903.1 vs. uniprot
Match: M5S4X5_9BACT (Nudix family hydrolase n=1 Tax=Rhodopirellula maiorica SM1 TaxID=1265738 RepID=M5S4X5_9BACT)

HSP 1 Score: 101 bits (251), Expect = 9.770e-25
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 FRYQWPRPAVTVDCLIYALDEGKPWILLIKRKNAPFKGGWALPGGFVDQNEGLDAAARRELEEETGVTNRTMVQTGAYGALD 246
            + Y++PRPA+TVDC+++ L +    +LLI+R N PFKG WA+PGGFVD +E L+ AARREL EETGV N  + Q   +G +D
Sbjct:    3 YTYEYPRPALTVDCVVFGLSDSSLNVLLIQRANPPFKGRWAIPGGFVDMDEALEDAARRELHEETGVKNLFVEQLYTFGGVD 84          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig55899.15903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCU6_ECTSI1.110e-5098.73ADP-ribose pyrophosphatase n=2 Tax=Ectocarpus TaxI... [more]
A0A6V1NPN0_HETAK4.430e-2858.23Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
I2CQQ6_NANGC9.880e-2760.76Nudix hydrolase n=2 Tax=Nannochloropsis gaditana T... [more]
A0A7S2XUX9_9STRA6.660e-2653.85Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1G2YDB5_9BACT7.740e-2659.74Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A8A4TKI6_9BACT1.750e-2558.54NUDIX domain-containing protein n=1 Tax=Sulfidibac... [more]
A0A3P1SLV2_9BACT2.520e-2552.44NUDIX hydrolase n=2 Tax=Prevotella sp. OH937_COT-1... [more]
A0A1G3RL27_9SPIR4.050e-2562.03NUDIX hydrolase n=1 Tax=Spirochaetes bacterium RIF... [more]
A0A2N1R4E6_9SPIR8.420e-2560.76NUDIX hydrolase n=1 Tax=Spirochaetae bacterium HGW... [more]
M5S4X5_9BACT9.770e-2553.66Nudix family hydrolase n=1 Tax=Rhodopirellula maio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig55899contigEcto-sp13_S_contig55899:365..868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score170.2
Seed ortholog evalue3.9e-40
Seed eggNOG ortholog2880.D8LCU6
Model size246
KEGG koko:K03574
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.NUDIX domain
EggNOG OGs2S8UU@2759,COG1051@1
EC3.6.1.55
Cds size246
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463774.1434288-CDS-Ecto-sp13_S_contig55899:364..4941681463774.1434288-CDS-Ecto-sp13_S_contig55899:364..494Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig55899 365..494 +
1681463774.1569536-CDS-Ecto-sp13_S_contig55899:752..8681681463774.1569536-CDS-Ecto-sp13_S_contig55899:752..868Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig55899 753..868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig55899.15903.1prot_Ecto-sp13_S_contig55899.15903.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig55899 365..868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig55899.15903.1

>prot_Ecto-sp13_S_contig55899.15903.1 ID=prot_Ecto-sp13_S_contig55899.15903.1|Name=mRNA_Ecto-sp13_S_contig55899.15903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
FRYQWPRPAVTVDCLIYALDEGKPWILLIKRKNAPFKGGWALPGGFVDQN
EGLDAAARRELEEETGVTNRTMVQTGAYGALD
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mRNA from alignment at Ecto-sp13_S_contig55899:365..868+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig55899.15903.1 ID=mRNA_Ecto-sp13_S_contig55899.15903.1|Name=mRNA_Ecto-sp13_S_contig55899.15903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=504bp|location=Sequence derived from alignment at Ecto-sp13_S_contig55899:365..868+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCGTTACCAGTGGCCGCGTCCGGCGGTAACGGTGGACTGCCTGATCTA CGCTCTGGACGAGGGGAAGCCGTGGATCCTGCTCATCAAGCGAAAGAACG CCCCCTTCAAGGGGGGCTGGGCGCTCCCTGGTAAGCGTAAGAGATGCCTT CATTTGCGTTTCCTCCCCTTGGCAACGCGTGTCTTGTGACGAATGGTGAT CTTGGTCGTTTGTGGCCAAAACAGCATCGGCTCTCCAGGAGTAACAGCAG TCACACCGCCAGCACCACCAGCAGGAGCAGCAGTCACACCAGCGGCAACA ACCACAACAGCAATCAACAACACGTGCCCTCCTGCATGTACACCAACCGC TCCTCCTCTGTCCGTACGCCGACGGTCTCCCCTCTCAGGCGGCTTCGTGG ACCAGAACGAAGGGCTCGACGCGGCTGCCCGGAGGGAGCTGGAAGAAGAA ACCGGCGTCACCAACCGCACGATGGTGCAAACAGGAGCATACGGTGCGTT GGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig55899:365..868+

>mRNA_Ecto-sp13_S_contig55899.15903.1 ID=mRNA_Ecto-sp13_S_contig55899.15903.1|Name=mRNA_Ecto-sp13_S_contig55899.15903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig55899:365..868+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCGTTACCAGTGGCCGCGTCCGGCGGTAACGGTGGACTGCCTGATCTA
CGCTCTGGACGAGGGGAAGCCGTGGATCCTGCTCATCAAGCGAAAGAACG
CCCCCTTCAAGGGGGGCTGGGCGCTCCCTGGCGGCTTCGTGGACCAGAAC
GAAGGGCTCGACGCGGCTGCCCGGAGGGAGCTGGAAGAAGAAACCGGCGT
CACCAACCGCACGATGGTGCAAACAGGAGCATACGGTGCGTTGGAT
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