mRNA_Ecto-sp13_S_contig5588.15900.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5588.15900.1
Unique NamemRNA_Ecto-sp13_S_contig5588.15900.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5588.15900.1 vs. uniprot
Match: A0A6H5KH57_9PHAE (Kinesin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KH57_9PHAE)

HSP 1 Score: 259 bits (663), Expect = 3.190e-77
Identity = 158/163 (96.93%), Postives = 159/163 (97.55%), Query Frame = 1 
Query:    1 MSTGSHDEAAAAAAAVEELQRELREVREALRVEEAGRARLKEQMLAGVAKFRALEAQEKSTRERLEEAAAGQRGAVSAALKMKEKDHERELKFLKEENVQLFKEIGEWKAKTDKLTGELETLQTKLAAAQTAQQASPSMSKKRALGDRTNNTPAKATATAAVT 489
            MSTGSHDEAAAAAA VEELQRELREVREALRVEEAGRARLKEQMLAGVAKFRALEAQEKSTRERLEEAAAGQRGAVSAALK+KEKDHERELKFLKEENVQLFKEIGEWK KTDKLT ELETLQ KLAAAQTAQQASPSMSKKRALGDRTNNTPAKATATAAVT
Sbjct: 2594 MSTGSHDEAAAAAA-VEELQRELREVREALRVEEAGRARLKEQMLAGVAKFRALEAQEKSTRERLEEAAAGQRGAVSAALKIKEKDHERELKFLKEENVQLFKEIGEWKVKTDKLTAELETLQEKLAAAQTAQQASPSMSKKRALGDRTNNTPAKATATAAVT 2755
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5588.15900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KH57_9PHAE3.190e-7796.93Kinesin motor domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5588contigEcto-sp13_S_contig5588:5855..7704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score258.1
Seed ortholog evalue2.8e-66
Seed eggNOG ortholog2880.D7FIN0
Model size489
KEGG koko:K11498
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000775,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005856,GO:0005871,GO:0005875,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007051,GO:0007052,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022607,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043515,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044446,GO:0044464,GO:0044877,GO:0048285,GO:0051225,GO:0070925,GO:0071840,GO:0090307,GO:0098687,GO:0140014,GO:1902850,GO:1903047
Exons3
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0242@2759
Cds size489
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463774.0097032-CDS-Ecto-sp13_S_contig5588:5854..59261681463774.0097032-CDS-Ecto-sp13_S_contig5588:5854..5926Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5588 5855..5926 -
1681463774.0237215-CDS-Ecto-sp13_S_contig5588:6573..67051681463774.0237215-CDS-Ecto-sp13_S_contig5588:6573..6705Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5588 6574..6705 -
1681463774.0352345-CDS-Ecto-sp13_S_contig5588:7419..77041681463774.0352345-CDS-Ecto-sp13_S_contig5588:7419..7704Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5588 7420..7704 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5588.15900.1prot_Ecto-sp13_S_contig5588.15900.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5588 5855..7704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5588.15900.1

>prot_Ecto-sp13_S_contig5588.15900.1 ID=prot_Ecto-sp13_S_contig5588.15900.1|Name=mRNA_Ecto-sp13_S_contig5588.15900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=163bp
MSTGSHDEAAAAAAAVEELQRELREVREALRVEEAGRARLKEQMLAGVAK
FRALEAQEKSTRERLEEAAAGQRGAVSAALKMKEKDHERELKFLKEENVQ
LFKEIGEWKAKTDKLTGELETLQTKLAAAQTAQQASPSMSKKRALGDRTN
NTPAKATATAAVT
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mRNA from alignment at Ecto-sp13_S_contig5588:5855..7704-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5588.15900.1 ID=mRNA_Ecto-sp13_S_contig5588.15900.1|Name=mRNA_Ecto-sp13_S_contig5588.15900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1850bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5588:5855..7704- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCACGGGGTCCCACGATGAGGCGGCGGCGGCGGCGGCGGCGGTGGA
GGAGCTCCAGCGCGAGCTGCGGGAGGTCCGCGAGGCGCTGCGGGTCGAGG
AGGCCGGCCGGGCGCGCCTGAAGGAGCAGATGCTGGCCGGGGTGGCCAAG
TTCAGGGCGCTCGAGGCTCAGGAGAAGTCGACACGGGAGCGGCTGGAGGA
GGCGGCCGCGGGGCAGAGGGGCGCCGTAAGCGCCGCGCTCAAGATGAAGG
AGAAGGACCACGAGCGCGAGCTCAAATTCCTTAAGGTTGATTGATGTTGT
TTTTTGTTTGAGTGTGTTGTGCTGCGTCGTGAGGAAATGGGAGTAACTGT
TTTTTGTGCGTTGTGTAGTGCGTCGTATGGGGGGGCGTGTATTCATAGTC
GTGCATGCCGTAGTCGTTAGACTATTGACCTCGCATCTCTACAAAGCCGG
GACGGAGCACGCCGGGTTCTCACCGGACCAGGCTCTCACATCACCAAGCG
CGAAGCGCCGTGAGGTATTCGGCGAGTCGCATGGGGGGGCATGCATATTG
GCCTGCTGTTTGCCGTTTGCGGTCCGTAGCATTTTTTCGTCGAGTGTAGA
TATGCATAGATAGCGTACCGTCGGGGGCTCCAACGATGGGTAGCAACAGG
TTTATTCATGGGACGTATTGAAGCCGAAAATCAAACCAATAGGCCAGTCA
ACACCGAGGATGTTTCTTTTCCAGGGAAATTCCTGGTGCCACTTATTCAC
CCTGTGCGATCAACCGTTAGTTGGGCAGGCGTGACGATTCGGGGGACGTA
TTCGCATGCATGGCGATCAGCAACTCAAGTGTTTAGCGCAGGCGGTGCTG
TGTGTGTGTCTTCAGTGCATTTCGTCATCGCCACAGCAGTCAGCCAGGAC
ATGATCAACACCAACCTAACTCACCAGGTACTGCCGTTGTAGGCAGTCGA
CATAATTGAACGAAAGTTGACGCCTCCATTTGCTCCTTTTCTTCGGCAGG
AGGAGAACGTGCAGCTGTTCAAGGAGATCGGTGAATGGAAGGCCAAGACC
GACAAGCTCACTGGGGAGCTTGAGACCCTCCAGACGAAGCTCGCCGCCGC
CCAGACAGCGCAGCAAGCATCCCCCTCCATGGTATGTTATTTAAATTATA
TTTGTATTCTTCCTCTTCTTGTTCATTCTTGCTTTTATCATTGTTGTTGT
TGACATTTCTTGCAGTTGGCGTTTCGACTTGTCCTCCAAAAAAACAAAAA
GTAATAGATTGAACAACACACCCTACTTCGTACTAGGTTTTGGAGCTGCG
CCTCTTTTCCTTGCTAATGAGCATCCGCGGATAGATGTAGATTTTTCGAT
CGGGTGCACATTTGGGCGGCTACCGTAGGGGGGAGGTCGTCTGGCTATTT
TTGTTGCTTGCCGGGAAGCGCACTTGAGCCCCGACAACCCGCGGCTTGGA
GCAGCAGTAACCCCGCCATTGATCCTTTGTGGTTAACGATAACCGGTGGT
TTCATGCCTAGAACAACCTATTTTTTTGTCCTTTGAATCTCGCTGACGTG
ATTGGCTATCGCTCGCCCCCTCCCCGGTTGTGAGTACATTTCTCGCACCC
CCTAGTATTACGGTCCCTAATGCTACTGCCACTTCCTCTCTGCAGTTGTC
GTATACGCACCTCGCATCCCCCAGCATCTGCTGCCACTTTTTTTCTAGTG
TCGTAGGCCGGCAACCACCCCCTGCCTCCCCCCCCACGCTCGACTTACAT
GTGTGATTGTCTTTTTGCGAACCTTCAGAGCAAAAAGCGGGCCCTCGGCG
ACAGGACCAACAACACTCCCGCCAAGGCAACGGCAACGGCGGCGGTTACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5588:5855..7704-

>mRNA_Ecto-sp13_S_contig5588.15900.1 ID=mRNA_Ecto-sp13_S_contig5588.15900.1|Name=mRNA_Ecto-sp13_S_contig5588.15900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5588:5855..7704- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCACGGGGTCCCACGATGAGGCGGCGGCGGCGGCGGCGGCGGTGGA
GGAGCTCCAGCGCGAGCTGCGGGAGGTCCGCGAGGCGCTGCGGGTCGAGG
AGGCCGGCCGGGCGCGCCTGAAGGAGCAGATGCTGGCCGGGGTGGCCAAG
TTCAGGGCGCTCGAGGCTCAGGAGAAGTCGACACGGGAGCGGCTGGAGGA
GGCGGCCGCGGGGCAGAGGGGCGCCGTAAGCGCCGCGCTCAAGATGAAGG
AGAAGGACCACGAGCGCGAGCTCAAATTCCTTAAGGAGGAGAACGTGCAG
CTGTTCAAGGAGATCGGTGAATGGAAGGCCAAGACCGACAAGCTCACTGG
GGAGCTTGAGACCCTCCAGACGAAGCTCGCCGCCGCCCAGACAGCGCAGC
AAGCATCCCCCTCCATGAGCAAAAAGCGGGCCCTCGGCGACAGGACCAAC
AACACTCCCGCCAAGGCAACGGCAACGGCGGCGGTTACC
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