mRNA_Ecto-sp13_S_contig55861.15897.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig55861.15897.1
Unique NamemRNA_Ecto-sp13_S_contig55861.15897.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig55861.15897.1 vs. uniprot
Match: D7FR96_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR96_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 2.750e-45
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 1
Query:    1 TLEVSVSSPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRERVGDPGLAVTSPSYLLDNTYEVSDEDLT 231
            TLEVSV+SPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVR RVGDPGLAVTSPSYLLDNTYEV+DEDLT
Sbjct:   80 TLEVSVASPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRARVGDPGLAVTSPSYLLDNTYEVADEDLT 156          
BLAST of mRNA_Ecto-sp13_S_contig55861.15897.1 vs. uniprot
Match: A0A7S2GEU5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GEU5_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.260e-24
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 1
Query:   16 VSSPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRERVGDPGLAVTSPSYLLDNTYEVSDEDL 228
            V++PE+ME  GA     ++ GD++ L GDLG GKTCFARGFV+ RVGDP L VTSPSYLLD +YEV DEDL
Sbjct:   49 VNTPEDMERFGATLARGSTAGDIIFLTGDLGAGKTCFARGFVKARVGDPYLRVTSPSYLLDQSYEVEDEDL 119          
BLAST of mRNA_Ecto-sp13_S_contig55861.15897.1 vs. uniprot
Match: A0A835Z1V9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V9_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.320e-22
Identity = 45/73 (61.64%), Postives = 52/73 (71.23%), Query Frame = 1
Query:    1 TLEVSVSSPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRERVGDPGLAVTSPSYLLDNTYEVSD 219
            T  + + SPE ME+ G      A  GDV+LL GDLGTGKTCF+RGF+RE   DP L VTSPSYLLDNTYE +D
Sbjct:   99 TSSLMIRSPESMEQLGQLLARGAEAGDVILLIGDLGTGKTCFSRGFIRECAEDPDLLVTSPSYLLDNTYEATD 171          
BLAST of mRNA_Ecto-sp13_S_contig55861.15897.1 vs. uniprot
Match: A0A7S2EJ05_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EJ05_TRICV)

HSP 1 Score: 91.3 bits (225), Expect = 2.650e-21
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    1 TLEVSVSSPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRERVGDPGLAVTSPSYLLDNTY 207
            TL +SV +PE+ME+ GA      SGGDV+LL GDLG GKTC +RGFVR R G  G+ VTSP+YLL N+Y
Sbjct:    3 TLTLSVPTPEDMEDVGAVLSVGTSGGDVILLGGDLGAGKTCLSRGFVRARTGMEGMRVTSPTYLLSNSY 71          
BLAST of mRNA_Ecto-sp13_S_contig55861.15897.1 vs. uniprot
Match: A0A7S4SUF0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SUF0_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.240e-19
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    1 TLEVSVSSPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRERVGDPGLAVTSPSYLLDNTYEVSD 219
            +L++S+ + E+ME+ GA       GGD +LL GDLG GKTCF+RGFVR R G   L VTSP+YLL NTYE  D
Sbjct:  186 SLQLSIPTSEDMEDVGAIISMGTKGGDTILLDGDLGAGKTCFSRGFVRARTGYIDLRVTSPTYLLSNTYEADD 258          
BLAST of mRNA_Ecto-sp13_S_contig55861.15897.1 vs. uniprot
Match: A0A7S4SUD7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SUD7_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.620e-19
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    1 TLEVSVSSPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRERVGDPGLAVTSPSYLLDNTYEVSD 219
            +L++S+ + E+ME+ GA       GGD +LL GDLG GKTCF+RGFVR R G   L VTSP+YLL NTYE  D
Sbjct:  186 SLQLSIPTSEDMEDVGAIISMGTKGGDTILLDGDLGAGKTCFSRGFVRARTGYIDLRVTSPTYLLSNTYEADD 258          
BLAST of mRNA_Ecto-sp13_S_contig55861.15897.1 vs. uniprot
Match: A0A7S2LPC8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LPC8_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.090e-18
Identity = 42/68 (61.76%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    4 LEVSVSSPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRERVGDPGLAVTSPSYLLDNTY 207
            L V + SPE ME  GA    D+  GDV+ L GDLG GKTCF+RGFVRERV  P L VTSP++LL NTY
Sbjct:  105 LHVKIESPEIMESLGAALAKDSVPGDVIFLDGDLGAGKTCFSRGFVRERVQRPRLRVTSPTFLLSNTY 172          
BLAST of mRNA_Ecto-sp13_S_contig55861.15897.1 vs. uniprot
Match: K0S9V1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S9V1_THAOC)

HSP 1 Score: 84.3 bits (207), Expect = 4.230e-18
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 TLEVSVSSPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRERVGDPGLAVTSPSYLLDNTYEV 213
            +LE+++ +PE+ME+ G     ++  GDV+LL GDLG GKTCF+RGFVR + G P   VTSP+YLL N Y V
Sbjct:   73 SLELTIPTPEDMEDIGGLLSVNSLPGDVILLDGDLGAGKTCFSRGFVRAKTGLPDERVTSPTYLLSNAYSV 143          
BLAST of mRNA_Ecto-sp13_S_contig55861.15897.1 vs. uniprot
Match: A0A7S2XNM5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNM5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.470e-17
Identity = 39/73 (53.42%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    1 TLEVSVSSPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRERVGDPGLAVTSPSYLLDNTYEVSD 219
            +L + + +PE+ME+ GA        GD +LL GDLG GKTC ARGFVR R G   ++VTSP+YLL NTYE  D
Sbjct:   87 SLCLDIPTPEDMEDLGAVLSMGTGPGDSILLKGDLGAGKTCLARGFVRARTGMADISVTSPTYLLSNTYEADD 159          
BLAST of mRNA_Ecto-sp13_S_contig55861.15897.1 vs. uniprot
Match: K3WTU4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTU4_GLOUD)

HSP 1 Score: 77.0 bits (188), Expect = 3.470e-16
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 1
Query:   34 MEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRERVGDPGLAVTSPSYLLDNTYEVSD 219
            ME+ GA        GDV+ L GDLG GKTCFARGF+RER  +  + VTSP+YLL NTYE S+
Sbjct:    1 MEQLGARVAGQCRRGDVIFLKGDLGCGKTCFARGFIRERTQNAAMQVTSPTYLLVNTYEQSE 62          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig55861.15897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR96_ECTSI2.750e-4596.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2GEU5_9STRA1.260e-2464.79Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835Z1V9_9STRA1.320e-2261.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2EJ05_TRICV2.650e-2160.87Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4SUF0_9STRA1.240e-1956.16Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4SUD7_9STRA4.620e-1956.16Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2LPC8_9STRA1.090e-1861.76Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
K0S9V1_THAOC4.230e-1853.52Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2XNM5_9STRA1.470e-1753.42Hypothetical protein n=1 Tax=Attheya septentrional... [more]
K3WTU4_GLOUD3.470e-1658.06Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig55861contigEcto-sp13_S_contig55861:512..889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score152.9
Seed ortholog evalue6.1e-35
Seed eggNOG ortholog2880.D7FR96
Model size234
KEGG koko:K06925
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Threonylcarbamoyl adenosine biosynthesis protein TsaE
EggNOG OGs2S3MQ@2759,COG0802@1
Cds size234
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463773.7459686-CDS-Ecto-sp13_S_contig55861:511..6471681463773.7459686-CDS-Ecto-sp13_S_contig55861:511..647Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig55861 512..647 -
1681463773.7647605-CDS-Ecto-sp13_S_contig55861:791..8891681463773.7647605-CDS-Ecto-sp13_S_contig55861:791..889Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig55861 792..889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig55861.15897.1prot_Ecto-sp13_S_contig55861.15897.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig55861 512..889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig55861.15897.1

>prot_Ecto-sp13_S_contig55861.15897.1 ID=prot_Ecto-sp13_S_contig55861.15897.1|Name=mRNA_Ecto-sp13_S_contig55861.15897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
TLEVSVSSPEEMEETGAFFGADASGGDVVLLWGDLGTGKTCFARGFVRER
VGDPGLAVTSPSYLLDNTYEVSDEDLT*
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mRNA from alignment at Ecto-sp13_S_contig55861:512..889-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig55861.15897.1 ID=mRNA_Ecto-sp13_S_contig55861.15897.1|Name=mRNA_Ecto-sp13_S_contig55861.15897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig55861:512..889- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTTTGGAGGTTTCTGTGTCATCACCGGAAGAAATGGAAGAAACAGGCGC TTTCTTCGGCGCGGACGCCAGTGGTGGAGACGTGGTTCTCTTGTGGGGGT AAGGTACACCGAGGTCACCTACCTGTGAACAGCATGGCTGCATTCTTGTG TCTGTTGATGTCCCGTAGAAGCTTATATGACATGTAGGAGTCCGTTTCAT ATAATTATATTCAAATTTTGGTCGCGTGCTTCCCGCGCGCAGAGACTTGG GAACGGGCAAGACTTGCTTCGCAAGGGGGTTTGTTCGAGAAAGAGTCGGG GATCCTGGCCTAGCGGTGACCTCACCGTCGTACCTCTTGGACAACACCTA TGAGGTTTCAGATGAAGATCTCACGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig55861:512..889-

>mRNA_Ecto-sp13_S_contig55861.15897.1 ID=mRNA_Ecto-sp13_S_contig55861.15897.1|Name=mRNA_Ecto-sp13_S_contig55861.15897.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig55861:512..889- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTTTGGAGGTTTCTGTGTCATCACCGGAAGAAATGGAAGAAACAGGCGC
TTTCTTCGGCGCGGACGCCAGTGGTGGAGACGTGGTTCTCTTGTGGGGAG
ACTTGGGAACGGGCAAGACTTGCTTCGCAAGGGGGTTTGTTCGAGAAAGA
GTCGGGGATCCTGGCCTAGCGGTGACCTCACCGTCGTACCTCTTGGACAA
CACCTATGAGGTTTCAGATGAAGATCTCACGTAA
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