mRNA_Ecto-sp13_S_contig5586.15896.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5586.15896.1
Unique NamemRNA_Ecto-sp13_S_contig5586.15896.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5586.15896.1 vs. uniprot
Match: D7FVI7_ECTSI (Hypothetical leucine rich repeat calcium binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI7_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 9.910e-44
Identity = 89/108 (82.41%), Postives = 94/108 (87.04%), Query Frame = 3 
Query:    3 GIMLPAIKQGQHLVVNSVPTADGGQGTAGHTGIDAVHDSGAPLWATELSAIGKERNSGINIDGGDTGSFSGGDSSSGKRIHSRRQSAAQERRQTLSAAPKEADDEAKA 326
            GIMLPA+KQGQ LVVNS PT DGGQGTAGH+GIDA+H S  PL A ELSAIGKERNSGINIDGG TG FSGGDSSSGK IH RRQ+AA  RRQTLSAAPKEADDEA+A
Sbjct:  380 GIMLPALKQGQRLVVNSAPTTDGGQGTAGHSGIDALHGSETPLRAKELSAIGKERNSGINIDGGGTGCFSGGDSSSGKSIHGRRQNAAHGRRQTLSAAPKEADDEAEA 487
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5586.15896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVI7_ECTSI9.910e-4482.41Hypothetical leucine rich repeat calcium binding p... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5586contigEcto-sp13_S_contig5586:3110..3705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score159.8
Seed ortholog evalue6.8e-37
Seed eggNOG ortholog2880.D7FVI7
Model size328
KEGG koko:K20865
KEGG Pathwayko04621,map04621
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat calcium binding protein
Ec32 orthologEc-05_005990.1
Cds size318
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463773.6867433-CDS-Ecto-sp13_S_contig5586:3109..32861681463773.6867433-CDS-Ecto-sp13_S_contig5586:3109..3286Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5586 3110..3286 -
1681463773.7021067-CDS-Ecto-sp13_S_contig5586:3556..36971681463773.7021067-CDS-Ecto-sp13_S_contig5586:3556..3697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5586 3557..3697 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463773.7131655-UTR-Ecto-sp13_S_contig5586:3697..37051681463773.7131655-UTR-Ecto-sp13_S_contig5586:3697..3705Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5586 3698..3705 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5586.15896.1prot_Ecto-sp13_S_contig5586.15896.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5586 3110..3697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5586.15896.1

>prot_Ecto-sp13_S_contig5586.15896.1 ID=prot_Ecto-sp13_S_contig5586.15896.1|Name=mRNA_Ecto-sp13_S_contig5586.15896.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
MLPAIKQGQHLVVNSVPTADGGQGTAGHTGIDAVHDSGAPLWATELSAIG
KERNSGINIDGGDTGSFSGGDSSSGKRIHSRRQSAAQERRQTLSAAPKEA
DDEAKA
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mRNA from alignment at Ecto-sp13_S_contig5586:3110..3705-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5586.15896.1 ID=mRNA_Ecto-sp13_S_contig5586.15896.1|Name=mRNA_Ecto-sp13_S_contig5586.15896.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=596bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5586:3110..3705- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGAATTATGCTGCCGGCAATCAAGCAAGGTCAACACCTGGTGGTCAAC
TCCGTTCCGACAGCTGATGGTGGACAAGGGACGGCAGGACACACCGGAAT
CGATGCCGTCCACGACTCCGGGGCTCCTCTGTGGGCAACAGAACTATCAG
TGAGTACGGACCGCGCGACTCTGTCGGGCGAATCATGTTTTACAGCAATG
CTCCCTAGGTCAACTAGGTAATGACTGACAATGAGTATTTCAACATACTC
GGCAAATGCGGGTATGCGACTTGAGATACGAGATTTGTGTATTCCGCAAC
GGCATAGCTTGACAGGTTTAAAGATCGTACGCGGGAGACCTTTGCTTCTC
CTCCACCGACTCCTGATCACTGCCATGTGCGAATCCGCACCACCATTGTG
TGTTCATTCCCGGTCGTAGGCCATCGGTAAAGAGCGCAACAGCGGTATAA
ACATTGACGGCGGAGATACAGGTAGTTTCAGCGGTGGCGATTCAAGTTCA
GGCAAGAGGATCCACAGCCGGAGGCAAAGCGCGGCCCAAGAGAGACGGCA
AACGTTATCAGCCGCACCCAAAGAAGCCGACGACGAAGCAAAAGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5586:3110..3705-

>mRNA_Ecto-sp13_S_contig5586.15896.1 ID=mRNA_Ecto-sp13_S_contig5586.15896.1|Name=mRNA_Ecto-sp13_S_contig5586.15896.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5586:3110..3705- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCCGGCAATCAAGCAAGGTCAACACCTGGTGGTCAACTCCGTTCC
GACAGCTGATGGTGGACAAGGGACGGCAGGACACACCGGAATCGATGCCG
TCCACGACTCCGGGGCTCCTCTGTGGGCAACAGAACTATCAGCCATCGGT
AAAGAGCGCAACAGCGGTATAAACATTGACGGCGGAGATACAGGTAGTTT
CAGCGGTGGCGATTCAAGTTCAGGCAAGAGGATCCACAGCCGGAGGCAAA
GCGCGGCCCAAGAGAGACGGCAAACGTTATCAGCCGCACCCAAAGAAGCC
GACGACGAAGCAAAAGCC
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