mRNA_Ecto-sp13_S_contig55841.15894.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig55841.15894.1
Unique NamemRNA_Ecto-sp13_S_contig55841.15894.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig55841.15894.1 vs. uniprot
Match: D8LN38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN38_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 8.730e-42
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 2 
Query:    5 IRMYHDGAMSKLLEKLSEDSDNPTVQLQGPFLIEKLAPPPAHRNVVMIAAGTGVNPSEQDGFGLMDCLVLPSFGSKTTPSMR 250
            IRMYHDGAMSKLLEKLSED+DNPTVQLQ PFLIEKLAP PAHR V+MIAAGT VNPS+Q+ FGLMDCLVLPSF S TTPS R
Sbjct:    3 IRMYHDGAMSKLLEKLSEDADNPTVQLQVPFLIEKLAPRPAHRKVIMIAAGTAVNPSKQNCFGLMDCLVLPSFVSITTPSAR 84
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BLAST of mRNA_Ecto-sp13_S_contig55841.15894.1 vs. uniprot
Match: D7FX04_ECTSI (Dopamine beta-monooxygenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX04_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.650e-26
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = 2 
Query:    2 RIRMYHDGAMSKLLEKLSEDSDNPTVQLQGPFLIEKLAPPPAHRNVVMIAAGTGVNPSEQDGFGLMDCLVLPSFGSKTTPS 244
            RIR+YHDGAMSKLLE+L++D+DNP VQLQGPF+I+KL PPPAHRNVVMIAAGTG+NP  Q    + D L LP   ++++ S
Sbjct:  837 RIRLYHDGAMSKLLERLAKDTDNPAVQLQGPFVIQKLVPPPAHRNVVMIAAGTGINPMVQQ---IRDYLALPRVAAQSSRS 914
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BLAST of mRNA_Ecto-sp13_S_contig55841.15894.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 1.660e-26
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = 2 
Query:    2 RIRMYHDGAMSKLLEKLSEDSDNPTVQLQGPFLIEKLAPPPAHRNVVMIAAGTGVNPSEQDGFGLMDCLVLPSFGSKTTPS 244
            RIR+YHDGAMSKLLE+L++D+DNP VQLQGPF+I+KL PPPAHRNVVMIAAGTG+NP  Q    + D L LP   ++++ S
Sbjct: 1527 RIRLYHDGAMSKLLERLAKDTDNPAVQLQGPFVIQKLVPPPAHRNVVMIAAGTGINPMVQQ---IRDYLALPRVAAQSSRS 1604
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BLAST of mRNA_Ecto-sp13_S_contig55841.15894.1 vs. uniprot
Match: D7FQW8_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW8_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 3.070e-26
Identity = 55/81 (67.90%), Postives = 64/81 (79.01%), Query Frame = 2 
Query:    2 RIRMYHDGAMSKLLEKLSEDSDNPTVQLQGPFLIEKLAPPPAHRNVVMIAAGTGVNPSEQDGFGLMDCLVLPSFGSKTTPS 244
            RIR+YHDGAMS+LLEKLS+D+DNP +QLQGPF+I KL PPPAHRNVVMIAAGTGVNP  Q    + D L LP   + +T S
Sbjct: 1039 RIRLYHDGAMSQLLEKLSKDTDNPAIQLQGPFIITKLVPPPAHRNVVMIAAGTGVNPMVQQ---IRDYLALPRDQAHSTRS 1116
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BLAST of mRNA_Ecto-sp13_S_contig55841.15894.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 3.710e-25
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 2 
Query:    2 RIRMYHDGAMSKLLEKLSEDSDNPTVQLQGPFLIEKLAPPPAHRNVVMIAAGTGVNP 172
            RIRMYHDGAMSKLLEKLS+D+DN  VQLQGPFL+ KLAPPPAHRNV+MIAAGTGVNP
Sbjct: 1206 RIRMYHDGAMSKLLEKLSKDTDNVAVQLQGPFLVNKLAPPPAHRNVIMIAAGTGVNP 1262
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BLAST of mRNA_Ecto-sp13_S_contig55841.15894.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 3.720e-25
Identity = 52/81 (64.20%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:    2 RIRMYHDGAMSKLLEKLSEDSDNPTVQLQGPFLIEKLAPPPAHRNVVMIAAGTGVNPSEQDGFGLMDCLVLPSFGSKTTPS 244
            RIR+Y DGAMSKLLE L++DSDNPTV+LQ PF+I+KL PPPAHRNV+MIAAGTG+NP  Q    + D L LP  G++++ S
Sbjct: 1288 RIRLYTDGAMSKLLENLAKDSDNPTVRLQAPFVIQKLVPPPAHRNVMMIAAGTGINPMVQQ---IRDYLALPKSGAQSSKS 1365
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BLAST of mRNA_Ecto-sp13_S_contig55841.15894.1 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 3.280e-24
Identity = 49/57 (85.96%), Postives = 53/57 (92.98%), Query Frame = 2 
Query:    2 RIRMYHDGAMSKLLEKLSEDSDNPTVQLQGPFLIEKLAPPPAHRNVVMIAAGTGVNP 172
            RIRMYHDGAMSKLLEKLS+D+DN  VQLQGPFLI KLAPPP +RNV+MIAAGTGVNP
Sbjct: 1212 RIRMYHDGAMSKLLEKLSQDTDNAAVQLQGPFLINKLAPPPVYRNVIMIAAGTGVNP 1268
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BLAST of mRNA_Ecto-sp13_S_contig55841.15894.1 vs. uniprot
Match: A0A6H5KC42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC42_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.900e-12
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 2 
Query:   56 EDSDNPTVQLQGPFLIEKLAPPPAHRNVVMIAAGTGVNPSE 178
            ++ DNP VQLQGPFL  +L PPPAHRNVVMIAAGTGVNPSE
Sbjct:  595 QNLDNPAVQLQGPFLQHRLTPPPAHRNVVMIAAGTGVNPSE 635
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BLAST of mRNA_Ecto-sp13_S_contig55841.15894.1 vs. uniprot
Match: A0A6H5JX59_9PHAE (Cytochrome b5 heme-binding domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX59_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 3.180e-11
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 2 
Query:   56 EDSDNPTVQLQGPFLIEKLAPPPAHRNVVMIAAGTGVNP 172
            ++ DNP VQLQGPFL  +L PPPAHRNVVMIAAGTGVNP
Sbjct:  774 QNLDNPAVQLQGPFLQHRLTPPPAHRNVVMIAAGTGVNP 812
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BLAST of mRNA_Ecto-sp13_S_contig55841.15894.1 vs. uniprot
Match: A0A6H5K303_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K303_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.220e-10
Identity = 26/40 (65.00%), Postives = 37/40 (92.50%), Query Frame = 2 
Query:   56 EDSDNPTVQLQGPFLIEKLAPPPAHRNVVMIAAGTGVNPS 175
            +++DNP+V+LQ PF+I+KLAPPPA+ NV++IAAGT +NPS
Sbjct:    8 QETDNPSVKLQDPFVIQKLAPPPANCNVILIAAGTSINPS 47
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig55841.15894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LN38_ECTSI8.730e-4285.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FX04_ECTSI1.650e-2665.43Dopamine beta-monooxygenase, putative n=1 Tax=Ecto... [more]
A0A6H5JBL8_9PHAE1.660e-2665.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQW8_ECTSI3.070e-2667.90Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J2_ECTSI3.710e-2587.72Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LFE6_ECTSI3.720e-2564.20Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J1_ECTSI3.280e-2485.96Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5KC42_9PHAE1.900e-1280.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX59_9PHAE3.180e-1179.49Cytochrome b5 heme-binding domain-containing prote... [more]
A0A6H5K303_9PHAE1.220e-1065.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig55841contigEcto-sp13_S_contig55841:263..909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size252
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463773.5712876-CDS-Ecto-sp13_S_contig55841:262..3201681463773.5712876-CDS-Ecto-sp13_S_contig55841:262..320Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig55841 263..320 +
1681463773.5805974-CDS-Ecto-sp13_S_contig55841:717..8361681463773.5805974-CDS-Ecto-sp13_S_contig55841:717..836Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig55841 718..836 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463773.5892398-UTR-Ecto-sp13_S_contig55841:836..9091681463773.5892398-UTR-Ecto-sp13_S_contig55841:836..909Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig55841 837..909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig55841.15894.1prot_Ecto-sp13_S_contig55841.15894.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig55841 263..836 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig55841.15894.1

>prot_Ecto-sp13_S_contig55841.15894.1 ID=prot_Ecto-sp13_S_contig55841.15894.1|Name=mRNA_Ecto-sp13_S_contig55841.15894.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
AHQDVSRRGDEQTARKTLRGFGQPDGPAARTIPHRKACPATRPPQRRHDC
GRHGRQPE*
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mRNA from alignment at Ecto-sp13_S_contig55841:263..909+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig55841.15894.1 ID=mRNA_Ecto-sp13_S_contig55841.15894.1|Name=mRNA_Ecto-sp13_S_contig55841.15894.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=647bp|location=Sequence derived from alignment at Ecto-sp13_S_contig55841:263..909+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCATCAGGATGTATCACGACGGGGCGATGAGCAAACTGCTAGAAAAAC
TCTCCGAGGTGGGTGGGGTTCGCGGAGTTGTCTTTGCAGAATTGTTTGCA
ACCCATGTCCATCAGGTTCGAACAATGTCGCGCTGTATGCACCGTTTTGG
GGGAAATTTTTCAGGTAGTTCACAAAACGCCAGAGATGTCCCGAACTGTT
GAATCGACCCATGTACTTACCAAACGACACCTGAATTTCGGGTGTCACGA
GTGCCATATTCTCTTTGATCGCGTAAGATGAAGGAGCGCCACAAGTTTGA
CGGTCGTCGCCTCACCCTGTTGTGGATAAAATGGGTGTACGAAAGGTTAT
GTCAAAAAGTGTTATTCAGACGTTGTGTACCCAGTCATATGAAGAGTTGT
GCTATCCCACGCCATGGTCCACGAACGTTTTCCGTCGGCTGCAAATCTCC
TTCAGGATTCGGACAACCCGACGGTCCAGCTGCAAGGACCATTCCTCATC
GAAAAGCTTGCCCCGCCACCCGCCCACCGCAACGTCGTCATGATTGCGGC
CGGCACGGGCGTCAACCCGAGTGAGCAAGATGGTTTCGGACTCATGGATT
GTCTCGTGCTCCCATCCTTTGGGTCGAAAACAACGCCGAGTATGCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig55841:263..909+

>mRNA_Ecto-sp13_S_contig55841.15894.1 ID=mRNA_Ecto-sp13_S_contig55841.15894.1|Name=mRNA_Ecto-sp13_S_contig55841.15894.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig55841:263..909+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCATCAGGATGTATCACGACGGGGCGATGAGCAAACTGCTAGAAAAAC
TCTCCGAGGATTCGGACAACCCGACGGTCCAGCTGCAAGGACCATTCCTC
ATCGAAAAGCTTGCCCCGCCACCCGCCCACCGCAACGTCGTCATGATTGC
GGCCGGCACGGGCGTCAACCCGAGTGA
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