mRNA_Ecto-sp13_S_contig5584.15893.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5584.15893.1
Unique NamemRNA_Ecto-sp13_S_contig5584.15893.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5584.15893.1 vs. uniprot
Match: D7FZR0_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR0_ECTSI)

HSP 1 Score: 466 bits (1198), Expect = 1.200e-160
Identity = 215/253 (84.98%), Postives = 223/253 (88.14%), Query Frame = 1 
Query:  289 VCGDPEQTKPSGSNTYSTASSNWESLATYRSGHVLEFVIVMNARHWGHLVFFICNADNDPDGIPTQECFNQYPLTRVDGDDDNGPIDPNFPGRYYCDPTCRGKTSEVDQTKPLHAISGENMKMRYVLPDVECSHCIMQMVYRESGCFSCFYHIGYEEFNPSSWPSACGLNKEHWVDTTGEASGQRGYSPEEFWACSDFSIARDTTPPGPTPSVETIPPVNEPTGCAEEWGQCGGAGEGAVDGVWTGPTCWCLG 1047
            VCGDPEQTKP+GSNTYSTASSNWE LATYRSG VLEFVIVMNA HWGHL FFICNADNDPDGIPTQECFN+YPLTR +GDDDN PIDPNFPGRYYCDPTCRG+T EVDQTKPLHAISGENMKMRYVLPD+ECSHCI+QMVY      +C +HIGYEEFNP SWPSAC  NKE WVDTT EA GQ GY PEEFWACSDFSI RD TPP PTPSVETIPPVNEPT CAEEWGQCGGAG GAVDGVWTGPTC   G
Sbjct:  106 VCGDPEQTKPAGSNTYSTASSNWEPLATYRSGQVLEFVIVMNAHHWGHLEFFICNADNDPDGIPTQECFNEYPLTRAEGDDDNSPIDPNFPGRYYCDPTCRGQTGEVDQTKPLHAISGENMKMRYVLPDIECSHCILQMVYHTGN--TC-HHIGYEEFNPPSWPSACAPNKEDWVDTTREACGQGGYYPEEFWACSDFSITRDATPPSPTPSVETIPPVNEPTECAEEWGQCGGAGGGAVDGVWTGPTCCVSG 355
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BLAST of mRNA_Ecto-sp13_S_contig5584.15893.1 vs. uniprot
Match: D7FZQ9_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ9_ECTSI)

HSP 1 Score: 397 bits (1019), Expect = 4.930e-133
Identity = 184/249 (73.90%), Postives = 200/249 (80.32%), Query Frame = 1 
Query:  289 VCGDPEQTKPSGSNTYSTASSNWESLATYRSGHVLEFVIVMNARHWGHLVFFICNADNDPDGIPTQECFNQYPLTRVDGDDDNGPIDPNFPGRYYCDPTCRGKTSEVDQTKPLHAISGENMKMRYVLPDVECSHCIMQMVYRESGCFSCFYHIGYEEFNPSSWPSACGLNKEHWVDTTGEASGQRGYSPEEFWACSDFSIARDTTPPGPTPSVETIPPVNEPTGCAEEWGQCGGAGEGAVDGVWTGPTC 1035
            VCGDPEQ KPSGSNTYSTASSNWE L T++SG  LEF +VMNA HWGHL FFICNADNDP+GIPTQECFN+YPLTR +GDD N PIDP+FPGRYYCDPTCRG+  EVDQTKP+HAISGENMKMRYVLPD+ECSHCI+QMVY      +C YHIGY++F+P SWP  C   KE WV+TT EA GQ GY PEEFWACSDFSI  D  PP  T      P V EPTGCAEEW QCGGAG  AV GVWTGPTC
Sbjct:  107 VCGDPEQNKPSGSNTYSTASSNWEPLTTFQSGQDLEFNVVMNAYHWGHLEFFICNADNDPNGIPTQECFNEYPLTRAEGDDYNSPIDPDFPGRYYCDPTCRGEEGEVDQTKPVHAISGENMKMRYVLPDIECSHCILQMVYHTGN--TC-YHIGYDDFDPPSWPGDCATTKEQWVNTTVEACGQEGYYPEEFWACSDFSITSDG-PPSSTXXXXXXPAVTEPTGCAEEWQQCGGAGGDAVGGVWTGPTC 351
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BLAST of mRNA_Ecto-sp13_S_contig5584.15893.1 vs. uniprot
Match: A0A6H5L279_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L279_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 1.050e-93
Identity = 152/248 (61.29%), Postives = 166/248 (66.94%), Query Frame = 1 
Query:  289 VCGDPEQTKPSGSNTYSTASSNWESLATYRSGHVLEFVIVMNARHWGHLVFFICNADNDPDGIPTQECFNQYPLTRVDGDDDNGPIDPNFPGRYYCDPTCRGKTSEVDQTKPLHAISGENMKMRYVLPDVECSHCIMQMVYRESGCFSCFYHIGYEEFNPSSWPSACGLNKEHWVDTTGEASGQRGYSPEEFWACSDFSIARDTT--PPGPTPSVETIPPVN-EPTGCAEEWGQCGGAGEGAVDGVWT 1023
            VCGDPEQ KPSGSNTYSTASSNWE LAT++SG VLEF +VMNA HWGHL FFICNAD+DPDGIPTQECFNQ                                        P  AISG NMKMRYVLPD+ECSHCI+QMVY      +C YH+GYEEFNP SWPSAC  +KE WVDTTG+A GQ GY PEEFWACSDFSIA   T   PG T   + +   +  P  CAEEWGQCGG+G GAVDGVWT
Sbjct:   40 VCGDPEQFKPSGSNTYSTASSNWEPLATFQSGQVLEFDVVMNAYHWGHLEFFICNADSDPDGIPTQECFNQ----------------------------------------PSPAISGNNMKMRYVLPDIECSHCILQMVYHTGN--TC-YHMGYEEFNPPSWPSACAPDKEDWVDTTGQACGQGGYYPEEFWACSDFSIASGPTCCVPGTTCYYKDVYWSDCRPAECAEEWGQCGGSGGGAVDGVWT 244
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BLAST of mRNA_Ecto-sp13_S_contig5584.15893.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 6.240e-80
Identity = 122/218 (55.96%), Postives = 147/218 (67.43%), Query Frame = 1 
Query:  289 VCGDPEQTKPSGSNTYSTASSNWESLATYRSGHVLEFVIVMNARHWGHLVFFICNADN--DPDGIPTQECFNQYPLTRVDGDDDNGPIDPNFPGRYYCDPTCRGKTSEVDQTKPLHAISGENMKMRYVLPDVECSHCIMQMVYRESGCFSCFYHIGYEEFNPSSWPSACGLNKEHWVDTTGEASGQRGYSPEEFWACSDFSIARDTTPPGPTPSVETI 936
            VCGDPEQ    G+N YSTA+ NW+ L ++ SG VLE  IVMNA HWGH  FF+CN D+  DPDG+PTQECFN +PLTR D D D  PIDPN+PGRYY DP CR + +E       ++I G N+KMRYVLPD+EC HCI+QMVY          HIGYEEFNP+SWPS+C  NK  W++      G RG  PEEFWACSDFS+  D + P   P  + +
Sbjct:  108 VCGDPEQNADEGTNVYSTANINWDPLDSFTSGQVLEMDIVMNAYHWGHCEFFVCNTDDMDDPDGVPTQECFNMHPLTRADDDGDASPIDPNYPGRYYVDPECREEETEQSS----NSIEGYNIKMRYVLPDIECEHCILQMVYYTGNTCK---HIGYEEFNPTSWPSSCAPNKWDWIELDRYVCGTRGQYPEEFWACSDFSMTSDGSTPADAPMPDPV 318
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BLAST of mRNA_Ecto-sp13_S_contig5584.15893.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 255 bits (652), Expect = 1.170e-72
Identity = 119/221 (53.85%), Postives = 143/221 (64.71%), Query Frame = 1 
Query:  289 VCGDPEQTKPSGSNTYSTASSNWESLATYRSGHVLEFVIVMNARHWGHLVFFICNAD--NDPDGIPTQECFNQYPLTRVDGDDDNGPIDPNFPGRYYCDPTCRGKTSEVDQTKPLHAISGENMKMRYVLPDVECSHCIMQMVYRESGCFSCFYHIGYEEFNPSSWPSACGLNKEHWVDTTGEASGQRGYSPEEFWACSDFSIARDTTPPGPTPSVETIPPV 945
            +CGDPEQ    GSN YSTA+  W+ L +++SG VLE  I+MNA HWGH  FF+CNAD  +DPDG+PTQECFN+YPLTR   D D  PIDPN+PGRYY DP CR    E +Q  P  A  G N+KMRYVLPD+EC  C++QM            HIGY+EF+P SWPS C  NK  W++      G+ G  PEEFWACSD S+  D + P PTP      PV
Sbjct:  112 ICGDPEQNADEGSNVYSTANIGWDVLGSFKSGEVLEMDIIMNAYHWGHCEFFLCNADEMDDPDGVPTQECFNRYPLTRAADDGDASPIDPNYPGRYYVDPECRA--GETEQGSPEGAPKGYNIKMRYVLPDIECDRCVLQM------------HIGYDEFDPPSWPSTCAPNKSDWIELNRYICGEEGAYPEEFWACSDISLTSDGSAPPPTPYTTPTTPV 318
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BLAST of mRNA_Ecto-sp13_S_contig5584.15893.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 2.400e-72
Identity = 128/278 (46.04%), Postives = 154/278 (55.40%), Query Frame = 1 
Query:  289 VCGDPEQTKPSGSNTYSTASSNWESLATYRSGHVLEFVIVMNARHWGHLVFFICNADN--DPDGIPTQECFNQYPLTRVDGDDDNGPIDPNFPGRYYCDPTCRGKTSEVDQTKPLHAISGENMKMRYVLPD-VECSHCIMQMVYRESGCFSCFYHIGYEEFNPSSWPSACGLNKEHWVDTTGEASGQRGYSPEEFWACSDFSIARD---TTPPGPT-PSVETIPPVNE----------------------------------PTGCAEEWGQCGGAGE 999
            +CGDPEQ +  G+N YST + +W  L TY+ G VLE  + M A HWGH+ FFICNAD   DPDGI  QECFN YPLTR +GDD+N PIDPN+PGRYY DP CR    E DQTKP  A  G  +   Y LP+ + C  CI+QM Y      SC  H+GYEEF P+SWPSAC   K  W++      G+ G  PEEFWAC+DF+I  D      P PT P  + + PV                                    P GC+E+W QCGG  E
Sbjct:   79 ICGDPEQNEEEGANFYSTPNGDWPILNTYQEGQVLEIKLGMTAYHWGHVEFFICNADEMEDPDGIANQECFNNYPLTRAEGDDENSPIDPNYPGRYYVDPKCR--EGETDQTKPEGAQDGYVIHASYQLPEGLTCDRCILQMNYYTGN--SC-KHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEEFWACADFAITPDGMANPTPAPTEPLADCLDPVGPYDQCGGEDYEGSDCCREGYECTEMASCYSQCRPIPGGCSEDWDQCGGTTE 351
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BLAST of mRNA_Ecto-sp13_S_contig5584.15893.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 2.350e-49
Identity = 86/143 (60.14%), Postives = 104/143 (72.73%), Query Frame = 1 
Query:  289 VCGDPEQTKPSGSNTYSTASSNWESLATYRSGHVLEFVIVMNARHWGHLVFFICNAD--NDPDGIPTQECFNQYPLTRVDGDDDNGPIDPNFPGRYYCDPTCRGKTSEVDQTKPLHAISGENMKMRYVLPDVECSHCIMQMVY 711
            +CGDPEQ    GSN YSTA+  W+ L +++SG VLE  I+MNA HWGH  FF+CNAD  +DPDG+PTQECFN+YPLTR   D +  PIDPN+PGRYY DP CR    E +Q  P  A  G N+KMRYVLPD+EC  C++QMVY
Sbjct:  112 ICGDPEQNADEGSNVYSTANIGWDVLDSFKSGEVLEIDIIMNAYHWGHCEFFLCNADEMDDPDGVPTQECFNRYPLTRAADDGNASPIDPNYPGRYYVDPECRA--GETEQGSPEGAPKGYNIKMRYVLPDIECDRCVLQMVY 252
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5584.15893.1 vs. uniprot
Match: A0A6H5JFL8_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL8_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 1.150e-48
Identity = 98/236 (41.53%), Postives = 133/236 (56.36%), Query Frame = 1 
Query:  289 VCGDPEQTKPSGSNTYSTASSNWESLATYRSGHVLEFVIVMNARHWGHLVFFICNADN---DPDGIPTQECFNQYPLTRVDGDDDNGPIDPNFPGRYYCDPTCRGKTSEVDQTKPLHAISGENMKMRYVLPD-VECSHCIMQMV-YRESGCFSCFYHIGYEEFNPSSWPSACGLNKEHWVDTTGEASGQRGYSPEEFWACSDFSIARD------TTP--PGPTPSVETIPPVNEPT 957
            +CGDP+Q     +N YS++ S+W +L T + G VL+  +V+     GHL FFICN+ +    P   P QECFN  PLTR +GDD N PIDP +PGRYY +P C    +E  +  P  A  G  + M+Y LP+ + C HC++QMV Y  + C     H+GY++F P SWPS C   K  W++T     G  G  PEE W+CSD SI  D      ++P  P   P + T  PV  P+
Sbjct:  112 ICGDPKQFSLESTNAYSSSLSDWSALETLKEGGVLDIKVVVAEYLGGHLEFFICNSADLRYGPTSKPNQECFNMNPLTRAEGDDVNSPIDPAYPGRYYVNPPCHA--TEHPEALPDGAQDGYVINMQYQLPEGLTCDHCVLQMVHYTGNTC----KHVGYDDFEPESWPSQCAPTKAEWINTDHWMCGMAGAYPEEHWSCSDISITTDGPTEKSSSPVEPDTPPPLSTATPVATPS 341
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5584.15893.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 7.970e-48
Identity = 95/210 (45.24%), Postives = 118/210 (56.19%), Query Frame = 1 
Query:  289 VCGDPEQTKPSGSNTYSTASSNWESLATYRSGHVLEFVIVMNARHWGHLVFFICNADNDPDG---IPTQECFNQYPLTRVDGDDDNGPIDPNFPGRYYCDPTCRGKTSEVDQTKPLHAISGENMKMRYVLPD-VECSHCIMQMVYRESGCFSCFYHIGYEEFNPSSWPSACGLNKEHWVDTTGEASGQRGYSPEEFWACSDFSIARDTTP 906
            +CGDPEQT   G N Y   + N+  L TY  G VLE  I+++  HWGH+  F+C+  + P+G   I TQ CFN YPL R   D+ NGPIDP + GR+  DP CR   SE DQ     A  G+    RY LP+ V C  C++QMVY      SC  H GY EFNP SWPS+C  +K  W++      G     PEEFW C+D SI  D  P
Sbjct:  107 ICGDPEQTAAEGDNKYGRENYNYPVLGTYAEGGVLEVKILVSTYHWGHVEAFLCDTADLPEGEDSIVTQSCFNDYPLDRAIDDEFNGPIDPEYKGRFILDPPCRA--SETDQDLVEGAYPGDVATARYQLPEGVVCDRCVVQMVYYTGN--SC-KHEGYAEFNPESWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITSDGGP 311
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5584.15893.1 vs. uniprot
Match: A0A6H5JMP7_9PHAE (Chitin-binding type-4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP7_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 4.540e-46
Identity = 90/214 (42.06%), Postives = 125/214 (58.41%), Query Frame = 1 
Query:  289 VCGDPEQTKPSGSNTYSTASSNWESLATYRSGHVLEFVIVMNARHWGHLVFFICN-AD-NDPDGIPTQECFNQYPLTRVDGDDDNGPIDPNFPGRYYCDPTCRGKTSEVDQTKPLHAISGE--------NMKMRYVLPDVECSHCIMQM-VYRESGCFSCFYHIGYEEFNPSSWPSACGLNKEHWVDTTGEASGQRGYS-PEEFWACSDFSIAR 894
            VCGDP Q      NTYST ++ W  ++TY+SG ++E   V+N  HWGH+ +F+C+ AD +DPDG+ TQ+C N YPL R + D  N PIDP++PGR++ +P CRG+T E DQT       GE        N+  RY LP+++C HC++QM  Y   GC    +H GY EF P  WP  C  +KE W+          G      F+ CSD ++A+
Sbjct:  161 VCGDPPQGGLDNPNTYSTPNTLWPPISTYQSGSIIELKAVINNNHWGHIEYFLCDTADMDDPDGVVTQDCLNMYPLDRDETDWWNSPIDPDYPGRFFVNPECRGETGETDQTGRPMLNDGEVGLDNGYINVG-RYHLPNIQCEHCVLQMKYYAYVGC----HHPGYHEFEPE-WPGDCAPDKEDWLPHKNPGCSDEGQKWGNVFFGCSDITLAK 368
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5584.15893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D7FZR0_ECTSI1.200e-16084.98EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FZQ9_ECTSI4.930e-13373.90EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5L279_9PHAE1.050e-9361.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMS9_ECTSI6.240e-8055.96EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
D7FRE8_ECTSI1.170e-7253.85EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G4D7_ECTSI2.400e-7246.04EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JJ37_9PHAE2.350e-4960.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFL8_9PHAE1.150e-4841.53CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LMF4_ECTSI7.970e-4845.24EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
A0A6H5JMP7_9PHAE4.540e-4642.06Chitin-binding type-4 domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5584contigEcto-sp13_S_contig5584:2421..8532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score196.8
Seed ortholog evalue1.7e-47
Seed eggNOG ortholog2880.D7FU28
Model size1076
KEGG koko:K01315
KEGG Pathwayko04080,ko04610,ko05150,ko05164,map04080,map04610,map05150,map05164
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.4.21.7
Cds size1074
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04147,ko04516
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5584.15893.1prot_Ecto-sp13_S_contig5584.15893.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5584 2421..8532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463773.478033-CDS-Ecto-sp13_S_contig5584:2420..25131681463773.478033-CDS-Ecto-sp13_S_contig5584:2420..2513Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5584 2421..2513 +
1681463773.4925992-CDS-Ecto-sp13_S_contig5584:3786..40021681463773.4925992-CDS-Ecto-sp13_S_contig5584:3786..4002Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5584 3787..4002 +
1681463773.5034864-CDS-Ecto-sp13_S_contig5584:4746..48631681463773.5034864-CDS-Ecto-sp13_S_contig5584:4746..4863Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5584 4747..4863 +
1681463773.511988-CDS-Ecto-sp13_S_contig5584:5628..59391681463773.511988-CDS-Ecto-sp13_S_contig5584:5628..5939Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5584 5629..5939 +
1681463773.5207164-CDS-Ecto-sp13_S_contig5584:6572..67301681463773.5207164-CDS-Ecto-sp13_S_contig5584:6572..6730Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5584 6573..6730 +
1681463773.529566-CDS-Ecto-sp13_S_contig5584:7249..73121681463773.529566-CDS-Ecto-sp13_S_contig5584:7249..7312Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5584 7250..7312 +
1681463773.5382247-CDS-Ecto-sp13_S_contig5584:8027..80521681463773.5382247-CDS-Ecto-sp13_S_contig5584:8027..8052Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5584 8028..8052 +
1681463773.5467312-CDS-Ecto-sp13_S_contig5584:8441..85321681463773.5467312-CDS-Ecto-sp13_S_contig5584:8441..8532Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5584 8442..8532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5584.15893.1

>prot_Ecto-sp13_S_contig5584.15893.1 ID=prot_Ecto-sp13_S_contig5584.15893.1|Name=mRNA_Ecto-sp13_S_contig5584.15893.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=358bp
TGLGSAQGPGPHLPALPHVAALREQRVLPRQGRPELRRMPPFPITPMDPQ
GQERGGLSSWTRTCSKATAEGARSRWPSSRWPRTVTTSSPTRSPSAVCGD
PEQTKPSGSNTYSTASSNWESLATYRSGHVLEFVIVMNARHWGHLVFFIC
NADNDPDGIPTQECFNQYPLTRVDGDDDNGPIDPNFPGRYYCDPTCRGKT
SEVDQTKPLHAISGENMKMRYVLPDVECSHCIMQMVYRESGCFSCFYHIG
YEEFNPSSWPSACGLNKEHWVDTTGEASGQRGYSPEEFWACSDFSIARDT
TPPGPTPSVETIPPVNEPTGCAEEWGQCGGAGEGAVDGVWTGPTCWCLGP
PALPRAG*
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mRNA from alignment at Ecto-sp13_S_contig5584:2421..8532+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5584.15893.1 ID=mRNA_Ecto-sp13_S_contig5584.15893.1|Name=mRNA_Ecto-sp13_S_contig5584.15893.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6112bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5584:2421..8532+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACTGGCCTTGGCTCTGCGCAAGGCCCAGGGCCACATCTACCAGCTTTACC
CCATGTCGCGGCCCTTCGCGAACAGCGAGTCCTTCCTCGACAGGTAAGTC
CGAGGAGAGCGTCGTGGAGGAGTCGCGATCGATAGAAGAGGCTTTGTGGT
TATTGAAAGGTTGGCTGTTCTACCGTAGCTGCTACTACTACGTGTACACA
CAGTCCCGCAATACCGATCGGAAGGAGGGACTCGACGATCGGCTTTTCAT
CGCTGTTCATGCGTGTTTGAAAATTGAAAATTTGTTTGTGTGTGTGTGGA
TCTGGTCTGCAGTCTGTGCGCAGGCGCACGGAATTATCCCCGCTCACATG
CAACAGCCATGCATGACCAACCGTTACGTGTGAGGGTGTGCTTTTACTTC
CGGGCCCTGGCGAAGATGGAGTGTGGACATCGCCCATTGCTCATAAATTT
CCCCACCGTTCGTTCTCAGACGGTACAAAGAACCGTGAACGTCGAGAGAA
ACACTGCTCTCGGGTCGTGTGTTGATAAGACTTGCTGTCTGTGCTCCGTT
CTCCTAGGAAATTTCGCTCCAATGCACTCACTCGGACCTGTGAACGGCAA
CCCACCCGAGACATTGCTTACATAGACCAATGTTGCTGCAACAACCGCGC
GATTGACTACAGCATAGACGATCCTTAAATTGTTAGAAGTTGGAAGGTCC
CAAATGCTGCAAATACCTCTGTGAGGAATTGTGGCGTAGGCAAACCTAAA
CCTGCTTTGTTGAGTGGGACGGACAGCGTGTCCCCTCACGAAATCGAAGT
CACTGACGCGCGATACGGTGGTTGTTTGAACTCGAGGCTACAAAACGGAA
AAGCATAATCCGGTAGGTAGGCGAAGGGACGGTAAAGAAAGGTTTCATCT
CTGTCGTTCTTTCTTCCAAGAGCAAAACAAAAAAACCATCTCTGCCCATA
GGCCAAGAATCCTCTGGCTTTCTGCGAACTACATAACAATATGTTAGTTT
TGCTGGACGCATGTGTTCTATTAACGACGTCCTACTATGATTTCTACTGT
CGATCCAGAACATTGACTCTAGCGTTGATTGACAGACGTTGGATAATTGG
CCTCTCTAGCAATCATGACGGGAGTCGCAAGGGCTCGCCAGACACGGTCT
TTCTACCGGGTCTAGACCTTGGCCTGCGCTCACCATGTGGCGCGCGTTGA
ATAGTGCTGGTCTGTTCCTTTCGACCGCGGGGTGAAGCGGCGGCATGACA
AAGGGAAGCGTTCTGGTAGGTAGATGTGAGGAACCCGAAGTTGCCACACT
CAGCGCGCACCCCCCCACCCCCGAAAAACGCTGGCGCGGCCGCAACGTTC
TTTTGCTCGTCCTCAGGGACGACCCGAACTTCGACGGATGCCCCCATTTC
CTATAACGCCCATGGATCCGCAGGGACAAGAGCGCGGGGGATTGAGCTCA
TGGACCCGGACGTGCTCGAAAGCCACGGCGGAGGGAGCGAGATCCCGCTG
GCCTTCGTCCCGCTGGCCCCGAACGGTAACTACCTCGAGCCCAACGAGGT
CGCCGTCCGCCGTGTGCGGCGATCCCGAGCAGGTATGTATGTGGTGAATG
AAGAAACACGTGGGCACACCCACGGCAATACCCGTCTTTGCTCGTGACCC
TTTCTACCGTCGAGCAGCTGTTCGTACCCGTACCAGGAACTACTTGTTTT
TGCTGGGTTGTTTTCGGGGAGTAGGAGCAGTGGATTGTCGTGTGCTTACT
GTGATATTTTCGCGAAGCTGGGCGGTGGGTATCAGTCTAGCATTCTCGCG
CCGTTCGTTATCCATCGACTGAACCAGCGCCCCGCGTGACGACCTCTACC
TTTTGAGTGGTTGCTTGAAAGACTCCATTCGTTTAGCGTACGTACAAGCC
AGCTTATTTGAGCAGGTTGTATCGCATGCAGAAAGTAAGGGTGTTGTGTG
GTATCATGCACGAGGCGGGGAAGAGGGGATCGCAACACCTAACCCTAGGC
CCTCGCCCCCCCCCGGTCTGACCCAACCAACCTCATCGCAGTTACCCATA
CTGTTGCGCCTTGTCATGGGCTACTTCGGCGGTTGCTTGAAGTGTCGTCT
ACGGCGCAGGCGTTTAACGACATATGTCCGACAGCGTACTCGCTTGTTGG
TGACAGTACAGTAGCGATGATGCATATAATATGTAGCTCTCTCACTTTCA
TGTGCATGGAGACAAAGAGAGACAGCAGACACAACACACACACAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGTAAGG
CTGACTCTGCACCTGTTTGCTGGCAGACCAAACCTTCGGGCAGCAATACG
TACAGCACGGCCAGCAGCAACTGGGAATCCCTCGCCACGTACCGGAGCGG
GCACGTGCTCGAGTTTGTCATCGTCATGAACGCCCGCCACTGGGTGAGAC
GGAATCGCACTCACAGGCGGCACCTTAGTCTGCTCTTACACCTGACACCT
GCCGTATGTAGCGGGAAGGTAAGGACTCCCGAGCCCCAAATATTGACCAC
GTTTCTATTGTCCATCTGTGCCGTTTTGCACGGTACCCTCTGGCGCGGAA
ATATGGGCCCGAGCCGAAAACGGTGAGCAAGTGAGCAACGCTCCTGCACG
AAACCGTCCGCATGCGCCAAATGTCGCGCTAGGAGCTTGGATGCAAAATT
CCATCTCGTGGTTTCATTCCGGATGCAAGTCCGAACATCTGCAAAAACTT
CCTTTATCAGGTTCTGGTGTGTGTATGAACTTACGGCTTTGCAAGAAACC
ACCCGTTCGTCCTTGCCACCGGTTGTTGTTTTCGCCATACGCTGAAAATT
GTACGAGGAGGACTGCCGCTATCACTACTTAATGACGCACTTGTCTCGGA
CACGGACAAGAGAGTATCCATTCGTGTTTGTTTCTGTTCCGTTTGGTCTG
GTCCGGATGCCTCGTGCAGGCAGAGCTATTCGACCAGGAATCACCCGGCC
TACCCTCTCCCGACCAATAGCCCCGGCACATCGGCCCGCCCCGGCATCGA
AGGTATTAGAGGTCAAACGCCAAACGTCTACGGCATGTGTTCACCTTTCC
CCCTCCTCCCGACACGCTCCGTCAACTGGAGGACGCGTGGTCAACGTGCG
GCCTGCGTTCACATGAGAATCCCCCCCCCCCTTCCCGACCGACCCATTCT
TGTTGCAGGGTCACCTCGTGTTCTTCATCTGCAACGCCGACAACGACCCC
GACGGCATCCCCACCCAAGAGTGCTTCAACCAGTACCCACTCACCCGCGT
GGATGGAGACGATGACAACGGTCCCATCGATCCCAACTTCCCGGGGCGCT
ACTATTGCGACCCCACATGCCGCGGGAAGACGAGCGAAGTGGACCAGACC
AAGCCCCTGCACGCCATCTCCGGCGAGAACATGAAGATGCGCTACGTGCT
GCCGGACGTGGAGTGCTCACACTGCATCATGCAGATGGTGTACCGTGAGT
CGGGGTGTTTTAGTTGTTTGTCGCTCGTGTTGTTGATAGTCTTGGGGTGT
GTGTGTGGTGGTGGGGTTTCCATCGTGTTGCCGGCGTTTCGAGGTGGCTA
CCGTTCTCGCTTCGTTTAGTGCTGCTCAAAAGCTCAGATCACACACGATT
CGTGACGTGTACTCTGCTGACTCCAATTGCACGACTGATATCGACGCGAA
CACACTGGTTGTGGTCTGTGTTTCAGGAGTAGGTTCGGTACGCACGTGGA
TACGACATCGAACAGCCGTTACAACCACGAGCTCTCCGATGTTGACGGCG
TACGTTGCTGCCGCCATACGCAAGAGGACCGAACAGAGTGTTCCTATGTC
GAGAGCATCAGATTAAGGGTGTCGTGTACGTTGGCAGCAGCTGCCAGATG
CGAAACTAGAATGTGCGTAACAAAAACGTGTTTGGCGAAAAAATTCAAAG
CAGCAGAAGTACTTCAGTACACTTCGCCCACGCGTCGTGTCTCTCCTTTC
CTGCGCGTCATCACACGAACCAGGTTTCGTTGACATCCTCATACACACGT
CATTGCTTACGTCTTACCCCCATCTCCCCCCACTACGCGTGTCAACGCCA
TGTACGTATCGATTGAATAACATGAAATTTTGGCACTCAAGACACCGGGA
AGCTACCACATCGGGTACGAAGAGTTCAACCCGTCCTCGTGGCCTAGCGC
CTGCGGCCTCAACAAGGAACACTGGGTTGACACCACCGGGGAGGCGAGCG
GTCAGAGGGGCTACTCCCCGGAGGAGTTCTGGGCGTGTTCCGACTTTAGC
ATTGCGCGCGGTGAGCGAGTATGAAGCGCTCGGTGAAAGTTCGGGAGGCG
GGAGGTGCCTGTGCGGATTGATGTATCGCGGGTGCCGTGCCTTCTTACCA
GCTATGTGTCTTGCGTTGATACGAATATCCTTGTTCCATGCGGTCATTCA
CACGAGAGCTAACGAGGCGCCGCCGATTTTCCGGCTCCTCAAAGCAACTC
GCAGGGTATTTCGAATCAACACTCCACTATTTTTTTTCCATGCGTACCAC
CCTCCCGCCCCGCCACGACGTCCATCGCCCATGATAAATCTTGCTGTGGA
AGGGAAACGAGAGCGGACATCCAACCTCGCGTCAAGCCTAGAGCGATCAG
TACCACTCACCTAGTTCTGCTCCCAATGTGTACCCATCGTCCTTGCTCTG
ACGCTCTTCTCCGTTGGGTTGTGAGGCTACCACCTCTGCGTCCATTAGGA
GAAAGGCTGTGCCGGATGCATCATCACTCTGATAGTCATGCACGTCCGGT
GGTCCACCCTCTGCTTGCATTCCCTCCAGATACGACGCCGCCGGGCCCAA
CCCCGTCGGTGGAGACCATTCCCCCGGTTAACGAGCCAACCGGTGAGAGG
CAGAAGGGAGGCGTCCGGACTGGCTCACGAACTTCGGCCCTGTGAAGCTT
CCTGTTGCAATTATTGTTGATCGCACAGCTGTTCATGCAGAGGCCAAAGT
TCGTATAGACATGGATTCATGGTTATTATCGCGCCGCGCAGTACATGAGG
GGTGATCCTCTCTATTCATCGGTGTGACGAGGCCGGTAACACGGCGTGTC
ACACACCTGGTCACACGATAGGTTACGGAATGAAGCTTCCATTGCTGAAC
TACAGTAACCGATACTGTTCACGTCCTGAGGGCACCTGCTATAAGGCCGG
GTTCATCACTTGGCACATACCCTGGTCTTTGAAGGACCACTAGTGCTGTC
GAACGTTTGAGTGGAGTTCGTACACGCGCGCGAAGGACGCTTGCCACCCA
CCACCCAGCGATGGAAGATATTTGGGAACTCTTGTGAAGTTGAGACAGGA
GTAGTAACACCTACTCGAGAAGTAGTCCTATGCAAGTCCTTCCGAATACC
AGGCACAAGATACTACAACCAGCAGTCAGCTCCCTCCCTGCACTTCAATA
TGGTGCGAATACTGATGTACGTGCGTTCACCGTTTCAAGAGCACGACGGA
CCTCTGGTATCTCAGCATAATACCTGACCATTCGCCACCCAACGACCGCT
TCTTGGCCCGCCGCTAGTCTATGGAATTCCCTTCCACGGCAACAACGCGA
ACAACAGGGTGTGCTGAGGAGTGGGGACAGTGGTGAGTTTCGAAGGATTC
TGTCTCTCGTTTGTTTGTTGTGCGTCCGTGCATGTGGAAGCTTGTAGGCT
GAGTCATACGGTCCCGCATAGATGGTCTATTCTCGTTTGCAGTCGTTTTT
CACCGGTGATGAGATGGTCGACAGGAACTGGTATGGGAGTATGGCGGCGA
AGCGGGCCGATCCTTTGCTCCTCGAAAAACAAGGAAAGGGTCATTCTCTC
TCTATCATCATAGACACACACACTCAACCCCTCTCTTGGATGTGGACGCA
GAACTATCCCGCAGCCATCGCGAAAGGAAGGACTCCGCCTACCTGATCCG
ACGCTTCACCATTTTGGTGATCGCATCAACCGCCTGTTTCTAGTACAAAT
CTTTGTGCTTCCTCTCTTCAGCGGTGGTGCCGGAGAGGGCGCTGTGGATG
GTGTCTGGACAGGCCCCACCTGCTGGTGTCTGGGACCACCTGCTCTTCCG
AGGGCGGGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5584:2421..8532+

>mRNA_Ecto-sp13_S_contig5584.15893.1 ID=mRNA_Ecto-sp13_S_contig5584.15893.1|Name=mRNA_Ecto-sp13_S_contig5584.15893.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1074bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5584:2421..8532+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACTGGCCTTGGCTCTGCGCAAGGCCCAGGGCCACATCTACCAGCTTTACC
CCATGTCGCGGCCCTTCGCGAACAGCGAGTCCTTCCTCGACAGGGACGAC
CCGAACTTCGACGGATGCCCCCATTTCCTATAACGCCCATGGATCCGCAG
GGACAAGAGCGCGGGGGATTGAGCTCATGGACCCGGACGTGCTCGAAAGC
CACGGCGGAGGGAGCGAGATCCCGCTGGCCTTCGTCCCGCTGGCCCCGAA
CGGTAACTACCTCGAGCCCAACGAGGTCGCCGTCCGCCGTGTGCGGCGAT
CCCGAGCAGACCAAACCTTCGGGCAGCAATACGTACAGCACGGCCAGCAG
CAACTGGGAATCCCTCGCCACGTACCGGAGCGGGCACGTGCTCGAGTTTG
TCATCGTCATGAACGCCCGCCACTGGGGTCACCTCGTGTTCTTCATCTGC
AACGCCGACAACGACCCCGACGGCATCCCCACCCAAGAGTGCTTCAACCA
GTACCCACTCACCCGCGTGGATGGAGACGATGACAACGGTCCCATCGATC
CCAACTTCCCGGGGCGCTACTATTGCGACCCCACATGCCGCGGGAAGACG
AGCGAAGTGGACCAGACCAAGCCCCTGCACGCCATCTCCGGCGAGAACAT
GAAGATGCGCTACGTGCTGCCGGACGTGGAGTGCTCACACTGCATCATGC
AGATGGTGTACCGTGAGTCGGGGTGTTTTAGTTGTTTCTACCACATCGGG
TACGAAGAGTTCAACCCGTCCTCGTGGCCTAGCGCCTGCGGCCTCAACAA
GGAACACTGGGTTGACACCACCGGGGAGGCGAGCGGTCAGAGGGGCTACT
CCCCGGAGGAGTTCTGGGCGTGTTCCGACTTTAGCATTGCGCGCGATACG
ACGCCGCCGGGCCCAACCCCGTCGGTGGAGACCATTCCCCCGGTTAACGA
GCCAACCGGGTGTGCTGAGGAGTGGGGACAGTGCGGTGGTGCCGGAGAGG
GCGCTGTGGATGGTGTCTGGACAGGCCCCACCTGCTGGTGTCTGGGACCA
CCTGCTCTTCCGAGGGCGGGGTAA
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