mRNA_Ecto-sp13_S_contig55813.15891.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig55813.15891.1
Unique NamemRNA_Ecto-sp13_S_contig55813.15891.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig55813.15891.1 vs. uniprot
Match: A0A6H5JJC7_9PHAE (MHD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJC7_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 9.610e-74
Identity = 113/115 (98.26%), Postives = 114/115 (99.13%), Query Frame = 1 
Query:    1 TGMPDCKFGLNDKLIMERDANARGRQDRRPAVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEEGRGRVTINLKVSADFSYKLFGSNIVVKV 345
            +GMPDCKFGLNDKLIMERD NARGRQDRRPAVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEEGRGRVTINLKVSADFSYKLFGSNIVVKV
Sbjct:  209 SGMPDCKFGLNDKLIMERDGNARGRQDRRPAVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEEGRGRVTINLKVSADFSYKLFGSNIVVKV 323
[Close]
BLAST of mRNA_Ecto-sp13_S_contig55813.15891.1 vs. uniprot
Match: A0A835Z9G3_9STRA (Clathrin assembly complex, medium subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G3_9STRA)

HSP 1 Score: 184 bits (466), Expect = 4.460e-54
Identity = 91/121 (75.21%), Postives = 102/121 (84.30%), Query Frame = 1 
Query:    1 TGMPDCKFGLNDKLIMERDA--NARGRQDR----RPAVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEEGRGRVTINLKVSADFSYKLFGSNIVVKV 345
            +GMP+CKFGLNDKLIME++A   A GR       + +V LDDCTFHRCVRLGKFDADRTITFIPP+GEFELMRYRV+DNVNLP RI+PAVQEEGR RVTINLK SA FSYKLF  N+V+KV
Sbjct:  224 SGMPECKFGLNDKLIMEKEALERAGGRTAATAHGKRSVELDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVSDNVNLPFRIVPAVQEEGRTRVTINLKCSAQFSYKLFAENVVIKV 344
[Close]
BLAST of mRNA_Ecto-sp13_S_contig55813.15891.1 vs. uniprot
Match: A0A7S0AFK6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AFK6_9STRA)

HSP 1 Score: 173 bits (438), Expect = 4.070e-52
Identity = 83/116 (71.55%), Postives = 100/116 (86.21%), Query Frame = 1 
Query:    1 TGMPDCKFGLNDKLIMERDANARGRQDRRPAVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEE-GRGRVTINLKVSADFSYKLFGSNIVVKV 345
            TGMP+CKFGLNDKL++E++++      R+P V +DDCTFHRCVRLGKFDADRTITFIPP+GEFELMRYRV DN+NLP RIIPAVQEE G  RV+INLKV A+FS KLF +++V+KV
Sbjct:   29 TGMPECKFGLNDKLVIEKESSNM----RKPGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVNDNINLPFRIIPAVQEEQGNTRVSINLKVIANFSDKLFATHVVIKV 140
[Close]
BLAST of mRNA_Ecto-sp13_S_contig55813.15891.1 vs. uniprot
Match: A0A4D9D2J2_9STRA (MHD domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2J2_9STRA)

HSP 1 Score: 178 bits (452), Expect = 6.690e-52
Identity = 85/118 (72.03%), Postives = 101/118 (85.59%), Query Frame = 1 
Query:    1 TGMPDCKFGLNDKLIMERDA--NARGRQDRRPA-VALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEEGRGRVTINLKVSADFSYKLFGSNIVVKV 345
            +G P+CKFGLNDKLIM+R+A   A G   RR A V +DDCTFHRCVRLG+FDADRTITFIPP+GEFELMRYRV +NVNLP R+IPA+QEEGR RV +N+KV+A+FS KLFG N+V+KV
Sbjct:  208 SGWPECKFGLNDKLIMDREAAGKASGAVTRRSAGVEIDDCTFHRCVRLGRFDADRTITFIPPDGEFELMRYRVTENVNLPFRLIPAIQEEGRNRVAVNVKVTANFSSKLFGQNVVIKV 325
[Close]
BLAST of mRNA_Ecto-sp13_S_contig55813.15891.1 vs. uniprot
Match: A0A7S2MKC8_9STRA (Hypothetical protein n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S2MKC8_9STRA)

HSP 1 Score: 173 bits (438), Expect = 8.020e-50
Identity = 81/116 (69.83%), Postives = 101/116 (87.07%), Query Frame = 1 
Query:    1 TGMPDCKFGLNDKLIMERDANARGRQDRRPAVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEE-GRGRVTINLKVSADFSYKLFGSNIVVKV 345
            TGMP+CKFGLNDKL++E++++ +    R+P V +DDCTFHRCVRLGKFDADRTITFIPP+GEFELMRYRV DN+NLP RIIPAVQEE G+ +V+INLKV A+FS KLF +++ +KV
Sbjct:  245 TGMPECKFGLNDKLVIEKESSGQ----RKPGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTDNINLPFRIIPAVQEEKGQTKVSINLKVIANFSDKLFATHVAIKV 356
[Close]
BLAST of mRNA_Ecto-sp13_S_contig55813.15891.1 vs. uniprot
Match: A0A7S1VT68_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VT68_9STRA)

HSP 1 Score: 172 bits (437), Expect = 9.820e-50
Identity = 81/116 (69.83%), Postives = 99/116 (85.34%), Query Frame = 1 
Query:    1 TGMPDCKFGLNDKLIMERDANARGRQDRRPAVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEE-GRGRVTINLKVSADFSYKLFGSNIVVKV 345
            TGMP+CKFGLNDKL++ER+ +      R+P V +DDCTFHRCVRLGKFDADRTITFIPP+GEFELMRYRV DN+NLP RIIPAVQEE G  RV+INLK+ A+FS +LF +++V+K+
Sbjct:  238 TGMPECKFGLNDKLVIEREESGA----RKPGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTDNINLPFRIIPAVQEEHGHTRVSINLKIIANFSDQLFATHVVIKI 349
[Close]
BLAST of mRNA_Ecto-sp13_S_contig55813.15891.1 vs. uniprot
Match: A0A7S2YSX5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YSX5_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.130e-49
Identity = 79/116 (68.10%), Postives = 100/116 (86.21%), Query Frame = 1 
Query:    1 TGMPDCKFGLNDKLIMERDANARGRQDRRPAVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEE-GRGRVTINLKVSADFSYKLFGSNIVVKV 345
            TGMP+CKFGLNDKL+++++     ++DR+P V +DDCTFHRCVRLGKFDADRTITFIPP+GEFELMRYRV DN+NLP RIIPAVQEE    +V+INLKV A+FS +LF +++V+K+
Sbjct:  207 TGMPECKFGLNDKLVIDKE-----KEDRKPGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTDNINLPFRIIPAVQEEPSLTKVSINLKVIANFSDQLFATHVVLKI 317
[Close]
BLAST of mRNA_Ecto-sp13_S_contig55813.15891.1 vs. uniprot
Match: A0A6V1NZE4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NZE4_HETAK)

HSP 1 Score: 171 bits (433), Expect = 2.360e-49
Identity = 76/118 (64.41%), Postives = 98/118 (83.05%), Query Frame = 1 
Query:    1 TGMPDCKFGLNDKLIMERDANARGRQ---DRRPAVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEEGRGRVTINLKVSADFSYKLFGSNIVVKV 345
            +GMP+C+FGLNDKLIMERD++A  R     ++  VA+DDCTFHRCVRLGKFDADRTITF+PP+GEFELMRYRV DN++ P +++PAVQEEGR RV+I +KV   F  KL+ +N+V+K+
Sbjct:  208 SGMPECRFGLNDKLIMERDSSASARAVHGAKKGGVAIDDCTFHRCVRLGKFDADRTITFVPPDGEFELMRYRVTDNIHCPFQVVPAVQEEGRSRVSITVKVMGKFGQKLYATNVVIKI 325
[Close]
BLAST of mRNA_Ecto-sp13_S_contig55813.15891.1 vs. uniprot
Match: B7FSB1_PHATC (Predicted protein n=2 Tax=Naviculales TaxID=38748 RepID=B7FSB1_PHATC)

HSP 1 Score: 170 bits (431), Expect = 3.950e-49
Identity = 79/116 (68.10%), Postives = 101/116 (87.07%), Query Frame = 1 
Query:    1 TGMPDCKFGLNDKLIMERDANARGRQDRRPAVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQE-EGRGRVTINLKVSADFSYKLFGSNIVVKV 345
            TGMP+CKFGLNDKL++E+D     ++DR+P+V +DDCTFHRCVRLGKFDADRTITFIPP+GEFELMRYRV DN+NLP RIIPAVQE +   +V+I+LKV A+FS +LF +++V+K+
Sbjct:  207 TGMPECKFGLNDKLVIEKD-----KEDRKPSVDIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTDNINLPFRIIPAVQESQNNTKVSIDLKVIANFSDQLFATHVVIKI 317
[Close]
BLAST of mRNA_Ecto-sp13_S_contig55813.15891.1 vs. uniprot
Match: A0A7S4HKQ6_9STRA (Hypothetical protein n=3 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HKQ6_9STRA)

HSP 1 Score: 167 bits (424), Expect = 9.340e-48
Identity = 79/115 (68.70%), Postives = 98/115 (85.22%), Query Frame = 1 
Query:    1 TGMPDCKFGLNDKLIMERDANARGRQDRRPAVALDDCTFHRCVRLGKFDADRTITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEEGRGRVTINLKVSADFSYKLFGSNIVVKV 345
            TGMP+CKFGLNDKL++++++ A+    R+P V +DDCTFHRCVRLGKFDADRTITFIPP+GEFELMRYRV DN+NLP RI PAV EE   +V+INLKV A+FS KLF +++V+KV
Sbjct:  247 TGMPECKFGLNDKLVIDKESGAQ----RKPGVEIDDCTFHRCVRLGKFDADRTITFIPPDGEFELMRYRVTDNINLPFRITPAVLEEAM-KVSINLKVIANFSDKLFATHVVIKV 356
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig55813.15891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJC7_9PHAE9.610e-7498.26MHD domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z9G3_9STRA4.460e-5475.21Clathrin assembly complex, medium subunit n=1 Tax=... [more]
A0A7S0AFK6_9STRA4.070e-5271.55Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A4D9D2J2_9STRA6.690e-5272.03MHD domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A7S2MKC8_9STRA8.020e-5069.83Hypothetical protein n=4 Tax=Bacillariophyta TaxID... [more]
A0A7S1VT68_9STRA9.820e-5069.83Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2YSX5_9STRA1.130e-4968.10Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A6V1NZE4_HETAK2.360e-4964.41Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
B7FSB1_PHATC3.950e-4968.10Predicted protein n=2 Tax=Naviculales TaxID=38748 ... [more]
A0A7S4HKQ6_9STRA9.340e-4868.70Hypothetical protein n=3 Tax=Odontella aurita TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig55813contigEcto-sp13_S_contig55813:14..888 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score233.0
Seed ortholog evalue6.7e-59
Seed eggNOG ortholog2880.D8LRL7
Preferred nameAP2M1
Model size345
KEGG koko:K11826
KEGG Pathwayko04144,ko04721,ko04961,ko05016,map04144,map04721,map04961,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0002090,GO:0002092,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0002791,GO:0002793,GO:0003674,GO:0005048,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0005905,GO:0006403,GO:0006807,GO:0006810,GO:0006886,GO:0006897,GO:0006898,GO:0006900,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007267,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008565,GO:0009056,GO:0009057,GO:0009653,GO:0009893,GO:0009987,GO:0010008,GO:0010171,GO:0010604,GO:0010646,GO:0010647,GO:0010939,GO:0010940,GO:0010941,GO:0010942,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016055,GO:0016185,GO:0016192,GO:0019222,GO:0019538,GO:0019882,GO:0019884,GO:0019886,GO:0019904,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030100,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030122,GO:0030125,GO:0030128,GO:0030131,GO:0030132,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030141,GO:0030163,GO:0030424,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031201,GO:0031323,GO:0031325,GO:0031410,GO:0031623,GO:0031982,GO:0032501,GO:0032502,GO:0032535,GO:0032799,GO:0032801,GO:0032802,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033218,GO:0033227,GO:0033267,GO:0033365,GO:0034381,GO:0034383,GO:0034613,GO:0035567,GO:0036019,GO:0036020,GO:0036465,GO:0042277,GO:0042886,GO:0042995,GO:0043005,GO:0043112,GO:0043170,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043679,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044306,GO:0044325,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0045202,GO:0045334,GO:0045807,GO:0046907,GO:0048002,GO:0048013,GO:0048259,GO:0048260,GO:0048475,GO:0048488,GO:0048489,GO:0048518,GO:0048519,GO:0048522,GO:0048856,GO:0050657,GO:0050658,GO:0050690,GO:0050708,GO:0050714,GO:0050750,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051236,GO:0051239,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051716,GO:0060071,GO:0060255,GO:0060341,GO:0060627,GO:0061024,GO:0061356,GO:0061357,GO:0061512,GO:0065003,GO:0065007,GO:0065008,GO:0070142,GO:0070201,GO:0070325,GO:0070382,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072583,GO:0090066,GO:0090087,GO:0090175,GO:0097006,GO:0097458,GO:0097479,GO:0097480,GO:0097494,GO:0097499,GO:0097708,GO:0097718,GO:0098588,GO:0098590,GO:0098657,GO:0098693,GO:0098793,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099003,GO:0099503,GO:0099504,GO:0120025,GO:0120038,GO:0150034,GO:0198738,GO:1900242,GO:1900244,GO:1901564,GO:1901565,GO:1901575,GO:1903076,GO:1903077,GO:1903421,GO:1903423,GO:1903530,GO:1903532,GO:1903827,GO:1903828,GO:1904375,GO:1904376,GO:1904951,GO:1905114,GO:1905330,GO:1905475,GO:1905476,GO:1990075,GO:2000026,GO:2000027
Exons2
EggNOG free text desc.endocytosis
EggNOG OGsKOG0938@1,KOG0938@2759
Cds size339
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463773.2966568-CDS-Ecto-sp13_S_contig55813:13..1581681463773.2966568-CDS-Ecto-sp13_S_contig55813:13..158Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig55813 14..158 -
1681463773.308594-CDS-Ecto-sp13_S_contig55813:688..8821681463773.308594-CDS-Ecto-sp13_S_contig55813:688..882Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig55813 689..882 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463773.3192809-UTR-Ecto-sp13_S_contig55813:882..8881681463773.3192809-UTR-Ecto-sp13_S_contig55813:882..888Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig55813 883..888 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig55813.15891.1prot_Ecto-sp13_S_contig55813.15891.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig55813 14..882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig55813.15891.1

>prot_Ecto-sp13_S_contig55813.15891.1 ID=prot_Ecto-sp13_S_contig55813.15891.1|Name=mRNA_Ecto-sp13_S_contig55813.15891.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
MPDCKFGLNDKLIMERDANARGRQDRRPAVALDDCTFHRCVRLGKFDADR
TITFIPPEGEFELMRYRVADNVNLPLRIIPAVQEEGRGRVTINLKVSADF
SYKLFGSNIVVKV
back to top

mRNA from alignment at Ecto-sp13_S_contig55813:14..888-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig55813.15891.1 ID=mRNA_Ecto-sp13_S_contig55813.15891.1|Name=mRNA_Ecto-sp13_S_contig55813.15891.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=875bp|location=Sequence derived from alignment at Ecto-sp13_S_contig55813:14..888- (Ectocarpus species13 EcNAP12_S_4_19m)
ACAGGGATGCCCGACTGCAAGTTCGGCCTGAACGACAAGCTCATCATGGA
GCGCGACGCGAATGCGAGAGGGAGGCAGGACCGTCGACCAGCGGTTGCCC
TCGACGACTGCACCTTTCACCGCTGCGTGCGGCTGGGCAAGTTCGACGCT
GATCGGACGATCACCTTCATCCCGCCCGAGGGCGAGTTCGAGCTCATGCG
GTGAGATACTGTAGTTGTTCGTGGTGTGGGGGGTGTTGTTGTGGGGGTGG
GGGGGTGGGGGGGGGGGGTGGGGGTGGGGGGGGGGTGGGGGGGGGGGGGG
GGGGGGCAGATACACACGGGGGCGCTGCTGCTTCCTCTGCGCAAGGTGTG
CCGGTACATGTAGAGTAGCGTGTTGATCTTGGTGTGTTGTGCAACATTTT
GCGTCAAGTCACGGGTGCAGAAGTTTAACCTCTCGTGCTCTGTACAAGTC
ATTTACCCAGCCGGAAGCATAGCTAATGAAGCCTCTCTCGTGACGTAAAA
GATCGAGGATTGATGAACGGTGACGTTGTGGAGGCGCAAAAGTGCCATTT
CATGCGTACACCGGCGTTGATTGTCGAGCCCGCTATGTCAATAGCTGTGT
GGCGCAGTCAGGTCGGCCGAGTTTCCATTCCCGCCGTTCTCTCGTCTTTT
TTTTTATAACGTTGCGGTTTCTCGTCCCACCAGCAAACGCCAGCGAGTGA
TACCTGATTCTCTGTTTTTTTGCCGGGCAGATACCGCGTCGCGGACAACG
TGAATCTTCCTCTTCGGATAATACCTGCAGTGCAGGAGGAGGGAAGGGGT
CGCGTCACCATTAACCTCAAGGTCTCTGCGGACTTCAGCTACAAGCTCTT
CGGCAGCAACATTGTGGTGAAGGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig55813:14..888-

>mRNA_Ecto-sp13_S_contig55813.15891.1 ID=mRNA_Ecto-sp13_S_contig55813.15891.1|Name=mRNA_Ecto-sp13_S_contig55813.15891.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig55813:14..888- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGACTGCAAGTTCGGCCTGAACGACAAGCTCATCATGGAGCGCGA
CGCGAATGCGAGAGGGAGGCAGGACCGTCGACCAGCGGTTGCCCTCGACG
ACTGCACCTTTCACCGCTGCGTGCGGCTGGGCAAGTTCGACGCTGATCGG
ACGATCACCTTCATCCCGCCCGAGGGCGAGTTCGAGCTCATGCGATACCG
CGTCGCGGACAACGTGAATCTTCCTCTTCGGATAATACCTGCAGTGCAGG
AGGAGGGAAGGGGTCGCGTCACCATTAACCTCAAGGTCTCTGCGGACTTC
AGCTACAAGCTCTTCGGCAGCAACATTGTGGTGAAGGTG
back to top