mRNA_Ecto-sp13_S_contig55771.15885.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig55771.15885.1
Unique NamemRNA_Ecto-sp13_S_contig55771.15885.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig55771.15885.1 vs. uniprot
Match: D7FR38_ECTSI (AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR38_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 2.990e-21
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 1
Query:    1 GDRLGGRYEIIGDVGLGTFGRVVECWCLKRHRHVAVKVVRKV 126
            GDRLGGRYEIIGDVGLGTFGRVVECWCLKRHRHVAVKVVRKV
Sbjct:   13 GDRLGGRYEIIGDVGLGTFGRVVECWCLKRHRHVAVKVVRKV 54          
BLAST of mRNA_Ecto-sp13_S_contig55771.15885.1 vs. uniprot
Match: A0A6H5L2A1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A1_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.090e-19
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = 1
Query:    1 GDRLGGRYEIIGDVGLGTFGRVVECWCLKRHRHVAVKVVRKV 126
            GDRLGGRYEIIGDVGLGTFGRVVECWCLKRHR VAVKVVRKV
Sbjct:  415 GDRLGGRYEIIGDVGLGTFGRVVECWCLKRHRRVAVKVVRKV 456          
BLAST of mRNA_Ecto-sp13_S_contig55771.15885.1 vs. uniprot
Match: A0A4D9CUL9_9STRA (Protein kinase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUL9_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.560e-10
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1
Query:    1 GDRLGGRYEIIGDVGLGTFGRVVECWCLKRHRHVAVKVVRKV 126
            GD + GRYE++GDVG+GTFGRVV+C   KR R VAVKVVR +
Sbjct:  387 GDMIRGRYEVLGDVGMGTFGRVVQCLDRKRGREVAVKVVRSI 428          
BLAST of mRNA_Ecto-sp13_S_contig55771.15885.1 vs. uniprot
Match: A0A7S3JSA8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSA8_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.640e-8
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1
Query:    1 GDRLGGRYEIIGDVGLGTFGRVVECWCLKRHRHVAVKVVRKV 126
            GD LG RYEI+G+ G GTFGRVVEC   K +  VA+K+VR+V
Sbjct:  117 GDILGNRYEILGNAGTGTFGRVVECIDRKNNHKVAIKIVRRV 158          
BLAST of mRNA_Ecto-sp13_S_contig55771.15885.1 vs. uniprot
Match: A0A7S4E8R3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E8R3_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.270e-7
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1
Query:    1 GDRLGGRYEIIGDVGLGTFGRVVECWCLKR--HRHVAVKVVRKV 126
            GD + GRYEI+G+ GLGTFGRVV+C  L+    R VA+KVVR++
Sbjct:   61 GDTIDGRYEIVGEAGLGTFGRVVDCVDLRHPDRRRVALKVVRRI 104          
BLAST of mRNA_Ecto-sp13_S_contig55771.15885.1 vs. uniprot
Match: A0A8J2WXB5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WXB5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.270e-7
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1
Query:    1 GDRLGGRYEIIGDVGLGTFGRVVECWCLKR--HRHVAVKVVRKV 126
            GD + GRYEI+G+ GLGTFGRVV+C  L+    R VA+KVVR++
Sbjct:  738 GDTIDGRYEIVGEAGLGTFGRVVDCVDLRHPDRRRVALKVVRRI 781          
BLAST of mRNA_Ecto-sp13_S_contig55771.15885.1 vs. uniprot
Match: UPI000B8CE8CA (serine/threonine-protein kinase AFC3 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8CE8CA)

HSP 1 Score: 53.9 bits (128), Expect = 2.730e-7
Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 1
Query:    1 GDRLGGRYEIIGDVGLGTFGRVVECWCLKRHRHVAVKVVRKVR 129
            G+ L  RY+I+G +G GTFGRV+ECW  +   +VA+KVVR +R
Sbjct:   60 GENLTSRYKILGKMGEGTFGRVLECWDRQTKEYVAIKVVRSIR 102          
BLAST of mRNA_Ecto-sp13_S_contig55771.15885.1 vs. uniprot
Match: A0A0S3RCN3_PHAAN (Protein kinase domain-containing protein n=6 Tax=Phaseoleae TaxID=163735 RepID=A0A0S3RCN3_PHAAN)

HSP 1 Score: 53.9 bits (128), Expect = 3.250e-7
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1
Query:    1 GDRLGGRYEIIGDVGLGTFGRVVECWCLKRHRHVAVKVVRKVR 129
            G+ L  RY+I+G +G GTFGRV+ECW  +   +VAVKVVR +R
Sbjct:   59 GENLTPRYKILGKMGEGTFGRVLECWDRQSREYVAVKVVRSIR 101          
BLAST of mRNA_Ecto-sp13_S_contig55771.15885.1 vs. uniprot
Match: A0A1L8GTA0_XENLA (dual specificity protein kinase CLK3 isoform X1 n=2 Tax=Xenopus laevis TaxID=8355 RepID=A0A1L8GTA0_XENLA)

HSP 1 Score: 53.5 bits (127), Expect = 4.460e-7
Identity = 25/44 (56.82%), Postives = 35/44 (79.55%), Query Frame = 1
Query:    1 GDRLGGRYEIIGDVGLGTFGRVVECWCLKR-HRHVAVKVVRKVR 129
            G+R+  RYEI+GD+G+GTFG+VVEC  L R +  VA+K++R VR
Sbjct:  148 GERIQERYEIVGDLGIGTFGKVVECLDLARGNSRVALKIIRNVR 191          
BLAST of mRNA_Ecto-sp13_S_contig55771.15885.1 vs. uniprot
Match: A0A6I9TG28_SESIN (serine/threonine-protein kinase AFC3 isoform X1 n=3 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TG28_SESIN)

HSP 1 Score: 52.4 bits (124), Expect = 1.140e-6
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 1
Query:    1 GDRLGGRYEIIGDVGLGTFGRVVECWCLKRHRHVAVKVVRKV 126
            G+ L  RY+I+G +G GTFGRV+ECW  +   +VAVKVVR +
Sbjct:   68 GENLTPRYKILGKMGEGTFGRVLECWDRQTREYVAVKVVRSI 109          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig55771.15885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR38_ECTSI2.990e-21100.00AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) kinas... [more]
A0A6H5L2A1_9PHAE1.090e-1997.62Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A4D9CUL9_9STRA4.560e-1066.67Protein kinase domain-containing protein n=1 Tax=N... [more]
A0A7S3JSA8_9STRA3.640e-861.90Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S4E8R3_9STRA1.270e-759.09Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2WXB5_9STRA1.270e-759.09Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
UPI000B8CE8CA2.730e-753.49serine/threonine-protein kinase AFC3 n=1 Tax=Caric... [more]
A0A0S3RCN3_PHAAN3.250e-755.81Protein kinase domain-containing protein n=6 Tax=P... [more]
A0A1L8GTA0_XENLA4.460e-756.82dual specificity protein kinase CLK3 isoform X1 n=... [more]
A0A6I9TG28_SESIN1.140e-654.76serine/threonine-protein kinase AFC3 isoform X1 n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig55771contigEcto-sp13_S_contig55771:165..293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size129
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size129
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463772.8245292-CDS-Ecto-sp13_S_contig55771:164..2931681463772.8245292-CDS-Ecto-sp13_S_contig55771:164..293Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig55771 165..293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig55771.15885.1prot_Ecto-sp13_S_contig55771.15885.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig55771 165..293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig55771.15885.1

>prot_Ecto-sp13_S_contig55771.15885.1 ID=prot_Ecto-sp13_S_contig55771.15885.1|Name=mRNA_Ecto-sp13_S_contig55771.15885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=43bp
GDRLGGRYEIIGDVGLGTFGRVVECWCLKRHRHVAVKVVRKVR
back to top

mRNA from alignment at Ecto-sp13_S_contig55771:165..293-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig55771.15885.1 ID=mRNA_Ecto-sp13_S_contig55771.15885.1|Name=mRNA_Ecto-sp13_S_contig55771.15885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig55771:165..293- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGACCGGCTGGGGGGTCGGTACGAGATAATCGGAGACGTGGGTCTGGG TACCTTCGGCCGTGTAGTGGAGTGCTGGTGCTTGAAGAGACACCGACATG TCGCCGTCAAGGTGGTCCGAAAGGTGAGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig55771:165..293-

>mRNA_Ecto-sp13_S_contig55771.15885.1 ID=mRNA_Ecto-sp13_S_contig55771.15885.1|Name=mRNA_Ecto-sp13_S_contig55771.15885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig55771:165..293- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGACCGGCTGGGGGGTCGGTACGAGATAATCGGAGACGTGGGTCTGGG
TACCTTCGGCCGTGTAGTGGAGTGCTGGTGCTTGAAGAGACACCGACATG
TCGCCGTCAAGGTGGTCCGAAAGGTGAGA
back to top