mRNA_Ecto-sp13_S_contig20456.6761.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20456.6761.1
Unique NamemRNA_Ecto-sp13_S_contig20456.6761.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig20456.6761.1 vs. uniprot
Match: D8LIZ2_ECTSI (Oligopeptidase A (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIZ2_ECTSI)

HSP 1 Score: 186 bits (471), Expect = 4.060e-54
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 
Query:    1 EHVASFYLDAYSRPENKRGGAWMGVCIGASKALGRSPVAYLTCNGSPPVGDTPSLMTFREVETLFHEFGHGLQHMLTTMVDGDCAG 258
            EHVASFYLDAYSRPENKRGGAWMGVCIGASKALGRSPVAYLTCNGSPPVGDTPSLMTFREVETLFHEFGHGLQHMLTTMVDGDCAG
Sbjct:  453 EHVASFYLDAYSRPENKRGGAWMGVCIGASKALGRSPVAYLTCNGSPPVGDTPSLMTFREVETLFHEFGHGLQHMLTTMVDGDCAG 538
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BLAST of mRNA_Ecto-sp13_S_contig20456.6761.1 vs. uniprot
Match: I2CQQ3_NANGC (Oligopeptidase A n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQQ3_NANGC)

HSP 1 Score: 159 bits (402), Expect = 1.460e-43
Identity = 72/86 (83.72%), Postives = 75/86 (87.21%), Query Frame = 1 
Query:    1 EHVASFYLDAYSRPENKRGGAWMGVCIGASKALGRSPVAYLTCNGSPPVGDTPSLMTFREVETLFHEFGHGLQHMLTTMVDGDCAG 258
            EH+ASFYLD YSRPENKRGGAWM VC G S+ LGR PVAYLTCNGSPPVGDTPSLMTFREVETLFHEFGHG QHMLT +  GD AG
Sbjct:  530 EHIASFYLDPYSRPENKRGGAWMDVCTGKSRVLGRKPVAYLTCNGSPPVGDTPSLMTFREVETLFHEFGHGAQHMLTEVAHGDAAG 615
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BLAST of mRNA_Ecto-sp13_S_contig20456.6761.1 vs. uniprot
Match: A0A6U4CXW2_9STRA (Oligopeptidase A n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4CXW2_9STRA)

HSP 1 Score: 155 bits (392), Expect = 2.240e-42
Identity = 71/86 (82.56%), Postives = 74/86 (86.05%), Query Frame = 1 
Query:    1 EHVASFYLDAYSRPENKRGGAWMGVCIGASKALGRSPVAYLTCNGSPPVGDTPSLMTFREVETLFHEFGHGLQHMLTTMVDGDCAG 258
            EH+ASF+LD YSRP  KRGGAWM VCIG SK L R PVAYLTCNGSPPVGD PSLMTFREVETLFHEFGHGLQHMLT + DGD AG
Sbjct:  430 EHIASFFLDPYSRPAEKRGGAWMDVCIGRSKVLSRKPVAYLTCNGSPPVGDKPSLMTFREVETLFHEFGHGLQHMLTDVEDGDAAG 515
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BLAST of mRNA_Ecto-sp13_S_contig20456.6761.1 vs. uniprot
Match: A0A7S2WWB3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WWB3_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.290e-40
Identity = 67/86 (77.91%), Postives = 73/86 (84.88%), Query Frame = 1 
Query:    1 EHVASFYLDAYSRPENKRGGAWMGVCIGASKALGRSPVAYLTCNGSPPVGDTPSLMTFREVETLFHEFGHGLQHMLTTMVDGDCAG 258
            EH+ASFYLD YSRPE+KRGGAWM VC+G S+AL R PVAYLTCNGSPPVGD PSLMTF EV TLFHE GHGLQHMLT ++ G  AG
Sbjct:  164 EHIASFYLDPYSRPESKRGGAWMDVCVGKSQALDRKPVAYLTCNGSPPVGDKPSLMTFNEVTTLFHETGHGLQHMLTQVMHGPAAG 249
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BLAST of mRNA_Ecto-sp13_S_contig20456.6761.1 vs. uniprot
Match: A0A812XK02_SYMPI (OOP protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812XK02_SYMPI)

HSP 1 Score: 146 bits (369), Expect = 1.960e-40
Identity = 65/86 (75.58%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:    1 EHVASFYLDAYSRPENKRGGAWMGVCIGASKALGRSPVAYLTCNGSPPVGDTPSLMTFREVETLFHEFGHGLQHMLTTMVDGDCAG 258
            +H+ASF+LD Y+RP  KRGGAWM  C+G SKA+G  PVAYLTCNGSPPVG  PSLMTF E ETLFHEFGHGLQHMLT + DGDCAG
Sbjct:  177 DHIASFFLDPYARPGEKRGGAWMDDCLGRSKAIGTKPVAYLTCNGSPPVGTKPSLMTFSEAETLFHEFGHGLQHMLTHVEDGDCAG 262
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BLAST of mRNA_Ecto-sp13_S_contig20456.6761.1 vs. uniprot
Match: A0A482S3E4_9ARCH (Oligopeptidase A n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S3E4_9ARCH)

HSP 1 Score: 149 bits (376), Expect = 2.580e-40
Identity = 67/85 (78.82%), Postives = 73/85 (85.88%), Query Frame = 1 
Query:    4 HVASFYLDAYSRPENKRGGAWMGVCIGASKALGRSPVAYLTCNGSPPVGDTPSLMTFREVETLFHEFGHGLQHMLTTMVDGDCAG 258
            ++ASF+LD YSRP  KRGGAWM VC+G SK L R PVAYLTCNGSPPVGD PSLMTFREVETLFHEFGHGLQHMLT +V G+ AG
Sbjct:  543 YIASFFLDPYSRPSEKRGGAWMDVCLGRSKVLNRKPVAYLTCNGSPPVGDKPSLMTFREVETLFHEFGHGLQHMLTNVVHGEAAG 627
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BLAST of mRNA_Ecto-sp13_S_contig20456.6761.1 vs. uniprot
Match: A0A7S2C0M6_9DINO (Oligopeptidase A (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2C0M6_9DINO)

HSP 1 Score: 147 bits (371), Expect = 8.590e-40
Identity = 66/86 (76.74%), Postives = 73/86 (84.88%), Query Frame = 1 
Query:    1 EHVASFYLDAYSRPENKRGGAWMGVCIGASKALGRSPVAYLTCNGSPPVGDTPSLMTFREVETLFHEFGHGLQHMLTTMVDGDCAG 258
            EH+ASFYLD YSRP +KRGGAWM  C+G S+ALG  PVAYLTCNGSPPVG+ PSLMTF E ETLFHEFGHGLQHMLT + +GD AG
Sbjct:  428 EHIASFYLDPYSRPGDKRGGAWMADCLGRSRALGTKPVAYLTCNGSPPVGEKPSLMTFSEAETLFHEFGHGLQHMLTRVEEGDAAG 513
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BLAST of mRNA_Ecto-sp13_S_contig20456.6761.1 vs. uniprot
Match: A0A7S2BVY6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BVY6_9STRA)

HSP 1 Score: 145 bits (367), Expect = 9.150e-40
Identity = 67/86 (77.91%), Postives = 71/86 (82.56%), Query Frame = 1 
Query:    1 EHVASFYLDAYSRPENKRGGAWMGVCIGASKALGRSPVAYLTCNGSPPVGDTPSLMTFREVETLFHEFGHGLQHMLTTMVDGDCAG 258
            EH+ASF+LD YSRPE KRGGAWM VCIG S+ L R PVAYLTCNGSPPVGD PSLMTF EV TLFHE GHGLQHMLT +V G  AG
Sbjct:  198 EHIASFFLDPYSRPETKRGGAWMDVCIGRSQVLDRKPVAYLTCNGSPPVGDKPSLMTFNEVTTLFHETGHGLQHMLTNIVHGGAAG 283
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BLAST of mRNA_Ecto-sp13_S_contig20456.6761.1 vs. uniprot
Match: A0A7S1HV08_9EUGL (Oligopeptidase A n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HV08_9EUGL)

HSP 1 Score: 148 bits (373), Expect = 1.340e-39
Identity = 66/86 (76.74%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:    1 EHVASFYLDAYSRPENKRGGAWMGVCIGASKALGRSPVAYLTCNGSPPVGDTPSLMTFREVETLFHEFGHGLQHMLTTMVDGDCAG 258
            EH+ASFYLD YSRPENKRGGAWMGVC G+SK + R PVAYLTCNGSPP GD PSLM F+EV TLFHE GHGLQHMLT + D + AG
Sbjct:  532 EHIASFYLDPYSRPENKRGGAWMGVCQGSSKVMNRKPVAYLTCNGSPPAGDVPSLMPFQEVTTLFHEMGHGLQHMLTRVQDAEAAG 617
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BLAST of mRNA_Ecto-sp13_S_contig20456.6761.1 vs. uniprot
Match: A0A7S4FQW2_9EUGL (Oligopeptidase A n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FQW2_9EUGL)

HSP 1 Score: 148 bits (373), Expect = 1.440e-39
Identity = 68/86 (79.07%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:    1 EHVASFYLDAYSRPENKRGGAWMGVCIGASKALGRSPVAYLTCNGSPPVGDTPSLMTFREVETLFHEFGHGLQHMLTTMVDGDCAG 258
            EH+A FYLD YSRPENKRGGAWMGVC G S+ L R PVAYLTCNGSPPVGD PSLMTF EVETLFHE GHGLQHMLT +  G+ AG
Sbjct:  599 EHIAGFYLDPYSRPENKRGGAWMGVCQGKSQVLDRKPVAYLTCNGSPPVGDVPSLMTFSEVETLFHETGHGLQHMLTRVPYGEAAG 684
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20456.6761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIZ2_ECTSI4.060e-54100.00Oligopeptidase A (Fragment) n=1 Tax=Ectocarpus sil... [more]
I2CQQ3_NANGC1.460e-4383.72Oligopeptidase A n=1 Tax=Nannochloropsis gaditana ... [more]
A0A6U4CXW2_9STRA2.240e-4282.56Oligopeptidase A n=1 Tax=Phaeomonas parva TaxID=12... [more]
A0A7S2WWB3_9STRA1.290e-4077.91Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A812XK02_SYMPI1.960e-4075.58OOP protein n=1 Tax=Symbiodinium pilosum TaxID=295... [more]
A0A482S3E4_9ARCH2.580e-4078.82Oligopeptidase A n=1 Tax=archaeon TaxID=1906665 Re... [more]
A0A7S2C0M6_9DINO8.590e-4076.74Oligopeptidase A (Fragment) n=1 Tax=Alexandrium an... [more]
A0A7S2BVY6_9STRA9.150e-4077.91Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1HV08_9EUGL1.340e-3976.74Oligopeptidase A n=1 Tax=Eutreptiella gymnastica T... [more]
A0A7S4FQW2_9EUGL1.440e-3979.07Oligopeptidase A n=1 Tax=Eutreptiella gymnastica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20456contigEcto-sp13_S_contig20456:1855..2732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score186.4
Seed ortholog evalue5.5e-45
Seed eggNOG ortholog2880.D8LIZ2
Preferred namePRD1
Model size258
KEGG koko:K01392,ko:K01405,ko:K01414,ko:K13726
KEGG Pathwayko04614,ko05143,map04614,map05143
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005773,GO:0005794,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009987,GO:0012505,GO:0016787,GO:0019538,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070011,GO:0070013,GO:0071704,GO:0140096,GO:1901564
Exons2
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGsCOG0339@1,KOG2089@2759
EC3.4.24.15,3.4.24.37,3.4.24.70
Cds size258
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463025.4415243-CDS-Ecto-sp13_S_contig20456:1854..19321681463025.4415243-CDS-Ecto-sp13_S_contig20456:1854..1932Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20456 1855..1932 -
1681463025.45394-CDS-Ecto-sp13_S_contig20456:2552..27321681463025.45394-CDS-Ecto-sp13_S_contig20456:2552..2732Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20456 2553..2732 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20456.6761.1prot_Ecto-sp13_S_contig20456.6761.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20456 1855..2732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20456.6761.1

>prot_Ecto-sp13_S_contig20456.6761.1 ID=prot_Ecto-sp13_S_contig20456.6761.1|Name=mRNA_Ecto-sp13_S_contig20456.6761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
EHVASFYLDAYSRPENKRGGAWMGVCIGASKALGRSPVAYLTCNGSPPVG
DTPSLMTFREVETLFHEFGHGLQHMLTTMVDGDCAG
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mRNA from alignment at Ecto-sp13_S_contig20456:1855..2732-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20456.6761.1 ID=mRNA_Ecto-sp13_S_contig20456.6761.1|Name=mRNA_Ecto-sp13_S_contig20456.6761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=878bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20456:1855..2732- (Ectocarpus species13 EcNAP12_S_4_19m)
GAACACGTCGCGAGCTTTTACCTCGACGCGTACTCGCGGCCGGAGAACAA
GCGCGGCGGGGCGTGGATGGGCGTGTGCATCGGTGCCAGCAAGGCTCTGG
GGAGGAGCCCCGTGGCGTACTTGACCTGCAACGGGTCCCCCCCAGTGGGG
GACACGCCCAGCCTCATGACCTTCCGAGAGGTGAGAGAGACGGATCTATA
GCGGACGATATATATTTATGTATTATTTTTTTTCCTTCTTGTTTTTTTTG
GAGGACGTGTTTTCTGTTTTGGGAGTGTCGGGGGGGAGGTCAGCAGAGGG
CAAGTCCAAGCTTATCGAGAAGTACGTAGCATCCTCCTCCTCCCCCCCCG
CACCCGCAAGTGGCAGGCGCATGCTTTGGTTTCTAAAGTGGTTATTCCCA
TCGGTGGATTACCATTCTATCCTCACCCCCCGCCCCCCCCATCGTTGTGA
AATCATTCCCATGTGCCTTATCCTTTACTTTTTGTTGCCAAGTTCTTGAG
GCCCTCCTCGGTGACACTTCGATATTTCGACCATTTCTCAGGATTTCCCC
GTCGTTGCGCGATAGAAACCCAAAAACACCTGGTTGTTTGTGCTCCTAAC
AACCTTCCTAAAGCGCGGCCGCAACTCAAACGACCTTTCCCCTTGTACTC
ATGCTTCCCAATCTGTGGAAACTTTTTCTAGCCTCCCTCGGCAGCTCTAA
TGTCTAAGCCGTACCGCAAGCTTCGCGATGGGATGTTTGACCGCCGCCGT
TGCCCCCCCCCCCCCCCGTCCATCGTGGCCATTTTTTTTTCGGGATGGAG
GTGGAAACCTTATTCCACGAGTTCGGTCATGGATTGCAACACATGCTGAC
CACCATGGTCGACGGGGACTGCGCAGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20456:1855..2732-

>mRNA_Ecto-sp13_S_contig20456.6761.1 ID=mRNA_Ecto-sp13_S_contig20456.6761.1|Name=mRNA_Ecto-sp13_S_contig20456.6761.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20456:1855..2732- (Ectocarpus species13 EcNAP12_S_4_19m)
GAACACGTCGCGAGCTTTTACCTCGACGCGTACTCGCGGCCGGAGAACAA
GCGCGGCGGGGCGTGGATGGGCGTGTGCATCGGTGCCAGCAAGGCTCTGG
GGAGGAGCCCCGTGGCGTACTTGACCTGCAACGGGTCCCCCCCAGTGGGG
GACACGCCCAGCCTCATGACCTTCCGAGAGGTGGAAACCTTATTCCACGA
GTTCGGTCATGGATTGCAACACATGCTGACCACCATGGTCGACGGGGACT
GCGCAGGT
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