mRNA_Ecto-sp13_S_contig20454.6760.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig20454.6760.1
Unique NamemRNA_Ecto-sp13_S_contig20454.6760.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig20454.6760.1 vs. uniprot
Match: D8LBZ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBZ0_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 9.070e-89
Identity = 136/139 (97.84%), Postives = 137/139 (98.56%), Query Frame = 1
Query:   13 MKLSDVDRDPSEIFRKTTLLEFPATSQKALELMLIRTFGIPSAAEVFHKSRSFVHAGKRYDDTDLLLKEYFENHTESDRANTAVARVNAIHEVFSGQISNADILYSLALFATLPAILIDRLEWRRCTDIEKAAFLAYYQ 429
            MKLSDVDRDPSEIFRKTTLLEFPATSQKALELMLIRTFGIPSAA VFHKSRSFVHAGKRYDDTDLLLKEYFENHTES+RANTAVARVNAIHEVFS QISNADILYSLALFATLPAILIDRLEWRRCTDIEKAAFLAYYQ
Sbjct:    1 MKLSDVDRDPSEIFRKTTLLEFPATSQKALELMLIRTFGIPSAAAVFHKSRSFVHAGKRYDDTDLLLKEYFENHTESNRANTAVARVNAIHEVFSSQISNADILYSLALFATLPAILIDRLEWRRCTDIEKAAFLAYYQ 139          
BLAST of mRNA_Ecto-sp13_S_contig20454.6760.1 vs. uniprot
Match: A0A6H5K0Q2_9PHAE (MPAB_Lcp_cat domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q2_9PHAE)

HSP 1 Score: 273 bits (697), Expect = 1.080e-88
Identity = 139/143 (97.20%), Postives = 139/143 (97.20%), Query Frame = 1
Query:    1 RVRGMKLSDVDRDPSEIFRKTTLLEFPATSQKALELMLIRTFGIPSAAEVFHKSRSFVHAGKRYDDTDLLLKEYFENHTESDRANTAVARVNAIHEVFSGQISNADILYSLALFATLPAILIDRLEWRRCTDIEKAAFLAYYQ 429
            RVRGMKLSDVDRDPSEIFRKTTLLEFPATSQKALELMLIRTFGIPSAA VFHKSRSFVHAGKRYDDTDLLLKEYFENHTESDRAN AVARVNAIHEVFS QISNADILYSLALF TLPAILIDRLEWRRCTDIEKAAFLAYYQ
Sbjct:   53 RVRGMKLSDVDRDPSEIFRKTTLLEFPATSQKALELMLIRTFGIPSAAAVFHKSRSFVHAGKRYDDTDLLLKEYFENHTESDRANIAVARVNAIHEVFSSQISNADILYSLALFTTLPAILIDRLEWRRCTDIEKAAFLAYYQ 195          
BLAST of mRNA_Ecto-sp13_S_contig20454.6760.1 vs. uniprot
Match: D8LGK0_ECTSI (MPAB_Lcp_cat domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK0_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 5.850e-35
Identity = 67/144 (46.53%), Postives = 97/144 (67.36%), Query Frame = 1
Query:    1 RVRGMKLS-DVDRDPSEIFRKTTLLEFPATSQKALELMLIRTFGIPSAAEVFHKSRSF-VHAGKRYDDTDLLLKEYFENHTESDRANTAVARVNAIHEVFSGQISNADILYSLALFATLPAILIDRLEWRRCTDIEKAAFLAYY 426
            R+R ++ S D   D SE+ R+   LEFP    K+LE  L  T+G+PS +++  K+  F  H GKRYDDTD +L+EY E+  + DR  TA+ R+NAIH +++ +ISNAD+L++L+ F T  A+ I+R  WRRCTD+E  A LA+Y
Sbjct:   31 RIRRLRKSLDAKEDCSEVVRQMVQLEFPFLMTKSLEFALFATYGVPSISKLLDKTGEFRKHVGKRYDDTDFILREYLESGKDGDRGRTAMGRLNAIHSMYAKEISNADMLFTLSQFVTARALWINRYGWRRCTDLETEALLAHY 174          
BLAST of mRNA_Ecto-sp13_S_contig20454.6760.1 vs. uniprot
Match: A0A4U0XGP4_9PEZI (MPAB_Lcp_cat domain-containing protein n=1 Tax=Cryomyces minteri TaxID=331657 RepID=A0A4U0XGP4_9PEZI)

HSP 1 Score: 105 bits (263), Expect = 3.740e-24
Identity = 56/125 (44.80%), Postives = 86/125 (68.80%), Query Frame = 1
Query:   70 LEFPATSQKALELMLIRTFGIPSAAEVFHKSRSF---VHAGKRYDDTDLLLKEYFENHTESDRANTAVARVNAIHEVF--SGQISNADILYSLALFATLPAILIDRLEWRRCTDIEKAAFLAYYQ 429
            LEFP T++KAL+  L RT+GIPS +++  +++       A KRY DT++L+ E+  +   SDRA +A+AR+N IH V+  +G+I+N D+LY+L+LFAT P   I R EWR  TD+E+ AF  +++
Sbjct:   83 LEFPFTTEKALQFALFRTYGIPSISKLLIQTKQLSEKAFASKRYADTEVLIAEFIGHAPSSDRACSAIARMNYIHSVYQRAGKITNDDMLYTLSLFATEPVGWIHRYEWRDLTDMERCAFGVFWK 207          
BLAST of mRNA_Ecto-sp13_S_contig20454.6760.1 vs. uniprot
Match: A0A8H3XEX8_GIGMA (DUF2236 domain-containing protein n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H3XEX8_GIGMA)

HSP 1 Score: 99.0 bits (245), Expect = 6.730e-22
Identity = 53/129 (41.09%), Postives = 78/129 (60.47%), Query Frame = 1
Query:   46 EIFRKTTLLEFPATSQKALELMLIRTFGIPSAAEVFHKSRSFV-HAGKRYDDTDLLLKEYFENHTESDRANTAVARVNAIHEVFSGQISNADILYSLALFATLPAILIDRLEWRRCTDIEKAAFLAYYQ 429
            EI   T+ LE P  S K+LE    R  GIP+ +++   +   V H GKRYDDTDL+++E+ EN  +SDRA TA+ R+N IH+ +   I N +++Y+L+LF   P   I+   WR+  DIE  A   Y++
Sbjct:   44 EITYMTSKLELPFISVKSLEFAFFRVLGIPNISKIIGSTGEMVYHCGKRYDDTDLIIREFCENPLDSDRAKTAIKRMNFIHKFYP--IENQEMVYTLSLFICEPPRWINEFGWRKLMDIETEAIYEYWK 170          
BLAST of mRNA_Ecto-sp13_S_contig20454.6760.1 vs. uniprot
Match: A0A816A8S4_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A816A8S4_ADIRI)

HSP 1 Score: 95.9 bits (237), Expect = 1.300e-20
Identity = 50/135 (37.04%), Postives = 79/135 (58.52%), Query Frame = 1
Query:   34 RDPSEIFRKTTLLEFPATSQKALELMLIRTFGIPSAAEVFHKSRSFVH---AGKRYDDTDLLLKEYFENHTESDRANTAVARVNAIHEVFSGQISNADILYSLALFATLPAILIDRLEWRRCTDIEKAAFLAYYQ 429
            R   +I  ++++ E P T   AL   L RT+GIP+ A +  ++   VH   AG+R +DT ++L E+F +  +SDR    +AR+N +H ++  +ISN D+LY+L+LF   P   I + EWR    IE+ A   YY+
Sbjct:   61 RTAQDIVVQSSIFEMPYTITTALSFALFRTYGIPTIARLLAQTNQLVHLDTAGRRAEDTGVILGEFFYHELDSDRGRMGLARMNYLHGLYGNRISNDDMLYTLSLFILEPIRWIKKYEWRSLVPIEEEARFVYYK 195          
BLAST of mRNA_Ecto-sp13_S_contig20454.6760.1 vs. uniprot
Match: A0A319E397_ASPSB (67 kDa myosin-cross-reactive antigen family protein n=1 Tax=Aspergillus sclerotiicarbonarius (strain CBS 121057 / IBT 28362) TaxID=1448318 RepID=A0A319E397_ASPSB)

HSP 1 Score: 96.3 bits (238), Expect = 2.180e-20
Identity = 55/138 (39.86%), Postives = 80/138 (57.97%), Query Frame = 1
Query:   31 DRDPSEIFRKTTLLEFPATSQKALELMLIRTFGIPSAAEVFHKSRSFVHAG---KRYDDTDLLLKEYFENHTESDRANTAVARVNAIHEVF--SGQISNADILYSLALFATLPAILIDRLEWRRCTDIEKAAFLAYYQ 429
            D D   I +    LEFPATS KAL+  L RT+GIP+ + +  ++  F +     KRY DT  L+ ++      S RA TA+AR   +H  +  SG+I  +D+LY+L+LFAT P   + R EWR  TD+E+ A   Y++
Sbjct:   66 DHDAWAIQKNILQLEFPATSIKALQFALFRTYGIPTISSLLLQTSQFSNTATSFKRYADTGALIGQFTTYPPSSPRARTAIARTKFLHAGYRASGKILESDMLYTLSLFATEPIRFVQRFEWREMTDLEQCAIGTYWK 203          
BLAST of mRNA_Ecto-sp13_S_contig20454.6760.1 vs. uniprot
Match: A0A814L750_9BILA (Hypothetical protein n=5 Tax=Adineta steineri TaxID=433720 RepID=A0A814L750_9BILA)

HSP 1 Score: 95.5 bits (236), Expect = 3.930e-20
Identity = 50/131 (38.17%), Postives = 76/131 (58.02%), Query Frame = 1
Query:   46 EIFRKTTLLEFPATSQKALELMLIRTFGIPSAAEVFHKSRSFVH---AGKRYDDTDLLLKEYFENHTESDRANTAVARVNAIHEVFSGQISNADILYSLALFATLPAILIDRLEWRRCTDIEKAAFLAYYQ 429
            EI R   L +FP T++ ++   L +T+GIPS + +  K+    H   AG+R +DT +LL E F N  +S RA  A+AR+N +H ++   ISN D+LY+L+LF   P     + EWR    IE+ A   Y++
Sbjct:   46 EISRIQVLYDFPYTTELSVSFALFKTYGIPSISRLLAKTNQLAHIETAGRRAEDTSILLAECFLNDLDSSRAQMAIARINYLHSLYKNSISNDDMLYTLSLFILEPIQWAKKYEWRSLVPIEQEARFIYWK 176          
BLAST of mRNA_Ecto-sp13_S_contig20454.6760.1 vs. uniprot
Match: A0A6A6BQM2_9PEZI (MPAB_Lcp_cat domain-containing protein (Fragment) n=1 Tax=Aplosporella prunicola CBS 121167 TaxID=1176127 RepID=A0A6A6BQM2_9PEZI)

HSP 1 Score: 91.7 bits (226), Expect = 4.640e-20
Identity = 48/124 (38.71%), Postives = 82/124 (66.13%), Query Frame = 1
Query:   73 EFPATSQKALELMLIRTFGIPSAAEVFHKSRSFVHAG---KRYDDTDLLLKEYFENHTESDRANTAVARVNAIHEVF--SGQISNADILYSLALFATLPAILIDRLEWRRCTDIEKAAFLAYYQ 429
            EFP T  K+ +  L RT+GIP+ +++  +++     G   +RY DT++L++E+      S+RAN+A+AR+N +H+++  SG+ISN+D+LY+L+LFA  P   I R EWR+ T +E  A   +++
Sbjct:   17 EFPFTWLKSWQFALFRTYGIPTISKLLVQTKQLSTCGNAPRRYVDTEVLIQEFTAYAPNSERANSAIARMNYLHDMYRKSGKISNSDLLYTLSLFALEPVRWISRYEWRQLTPMELCAIGTFWK 140          
BLAST of mRNA_Ecto-sp13_S_contig20454.6760.1 vs. uniprot
Match: A0A4Z1P1P0_9PEZI (MPAB_Lcp_cat domain-containing protein n=1 Tax=Venturia nashicola TaxID=86259 RepID=A0A4Z1P1P0_9PEZI)

HSP 1 Score: 94.4 bits (233), Expect = 5.290e-20
Identity = 52/133 (39.10%), Postives = 82/133 (61.65%), Query Frame = 1
Query:   46 EIFRKTTLLEFPATSQKALELMLIRTFGIPSAAEVFHKSRSFVH---AGKRYDDTDLLLKEYFENHTESDRANTAVARVNAIHEVFSGQ--ISNADILYSLALFATLPAILIDRLEWRRCTDIEKAAFLAYYQ 429
            EI +    +EFP T+QKALE  L RT+GIPS +++  K+    +   A +RY DT +L+ E+     E++R N A+AR+N  H ++  +  ISN D+LY+L+LFA  P   + R EWR+ T++E  A   +++
Sbjct:   57 EIQKYLFSVEFPFTTQKALEFALFRTYGIPSISKLLVKTNLLSNKEFASRRYADTTVLIAEFIAWSPEAERTNAAIARMNYFHSIYQKKNLISNDDMLYTLSLFAIEPVRWVKRYEWRQMTEMEICAMSTFWK 189          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig20454.6760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBZ0_ECTSI9.070e-8997.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0Q2_9PHAE1.080e-8897.20MPAB_Lcp_cat domain-containing protein n=1 Tax=Ect... [more]
D8LGK0_ECTSI5.850e-3546.53MPAB_Lcp_cat domain-containing protein n=2 Tax=Ect... [more]
A0A4U0XGP4_9PEZI3.740e-2444.80MPAB_Lcp_cat domain-containing protein n=1 Tax=Cry... [more]
A0A8H3XEX8_GIGMA6.730e-2241.09DUF2236 domain-containing protein n=1 Tax=Gigaspor... [more]
A0A816A8S4_ADIRI1.300e-2037.04Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A319E397_ASPSB2.180e-2039.8667 kDa myosin-cross-reactive antigen family protei... [more]
A0A814L750_9BILA3.930e-2038.17Hypothetical protein n=5 Tax=Adineta steineri TaxI... [more]
A0A6A6BQM2_9PEZI4.640e-2038.71MPAB_Lcp_cat domain-containing protein (Fragment) ... [more]
A0A4Z1P1P0_9PEZI5.290e-2039.10MPAB_Lcp_cat domain-containing protein n=1 Tax=Ven... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig20454contigEcto-sp13_S_contig20454:6..1354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score268.5
Seed ortholog evalue1.8e-69
Seed eggNOG ortholog2880.D8LBZ0
Model size429
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.oleate hydratase activity
EggNOG OGs2S1KN@2759,COG4716@1
Cds size417
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463025.3698637-CDS-Ecto-sp13_S_contig20454:5..631681463025.3698637-CDS-Ecto-sp13_S_contig20454:5..63Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20454 6..63 -
1681463025.380613-CDS-Ecto-sp13_S_contig20454:368..5511681463025.380613-CDS-Ecto-sp13_S_contig20454:368..551Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20454 369..551 -
1681463025.3897965-CDS-Ecto-sp13_S_contig20454:925..10041681463025.3897965-CDS-Ecto-sp13_S_contig20454:925..1004Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20454 926..1004 -
1681463025.3990805-CDS-Ecto-sp13_S_contig20454:1245..13421681463025.3990805-CDS-Ecto-sp13_S_contig20454:1245..1342Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig20454 1246..1342 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463025.4087572-UTR-Ecto-sp13_S_contig20454:1342..13541681463025.4087572-UTR-Ecto-sp13_S_contig20454:1342..1354Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig20454 1343..1354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig20454.6760.1prot_Ecto-sp13_S_contig20454.6760.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig20454 6..1342 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig20454.6760.1

>prot_Ecto-sp13_S_contig20454.6760.1 ID=prot_Ecto-sp13_S_contig20454.6760.1|Name=mRNA_Ecto-sp13_S_contig20454.6760.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp
MKLSDVDRDPSEIFRKTTLLEFPATSQKALELMLIRTFGIPSAAEVFHKS
RSFVHAGKRYDDTDLLLKEYFENHTESDRANTAVARVNAIHEVFSGQISN
ADILYSLALFATLPAILIDRLEWRRCTDIEKAAFLAYYQ
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mRNA from alignment at Ecto-sp13_S_contig20454:6..1354-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig20454.6760.1 ID=mRNA_Ecto-sp13_S_contig20454.6760.1|Name=mRNA_Ecto-sp13_S_contig20454.6760.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1349bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20454:6..1354- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGTCCGCGGCATGAAGCTCTCCGACGTAGATCGCGACCCTTCGGAGAT TTTCCGGAAGACGACCTTGCTCGAATTTCCCGCTACGTCCCAGAAGGCGT TAGAATTAAGTGAGTAAAAAACGTCAACGATCCTTGGCGTCTGACCGGGC TGGCCAACATCCAATGCAGATGGTTTTGTGTGTTTGTTCTCCCCATCCCC GAACTTATGTTTTGAGCGAAATGTACCGCGTTCATTGGAAGTTGTCCAGC AATGATTTGTCCGGCATCAGTGATAACGCTGCAAAAACTGATCGGCCTGA CCCGTTTTTTGCCCTCACTGTTTGCCTTTTTGCGCTTCGGCCTCTACTAG TGCTCATCCGTACCTTCGGCATCCCTTCTGCCGCCGAAGTTTTTCACAAG AGCCGATCGTTCGTCCACGCGGGCAAGAGGTAACGCAACAATGTGTTCGA TGCATCGCTAGAGATGTTTGGGAAATTGGGCGATTTCCTACTTTTGGAAT TCTGAGAGCTGCACCATGGAGACACAGATACTGCCTTCTTCAAGTGAATC ACTTGTGCTACGGTAGACTAATTTCGATTCAATCGGAGTCTGTGACGCAT CAGTGGTGGGCGTGGTTAGACGCCCCAAACCTCGTGGCACTTGTTCATGC TTCCGTTGGGTGTAAAACCTGCTAGAAACTCTTCAATACATTCGGAAACC GGTGCGACACGTGTTTTTGTTCCATTTCATGATGCACGTCTCATATTTTA TCTCTTTGTTCACATCGCGACGCATGCTGATACTCTACCGTCTGTGTGTG AAGGTACGACGACACCGACCTGCTGCTGAAGGAATATTTCGAGAACCACA CGGAGTCGGACCGCGCGAACACCGCGGTAGCCCGCGTGAACGCCATACAC GAAGTTTTCTCCGGCCAGATCAGCAACGCGGATATACTCTACTCGCTCGC CTTGTTCGCAACGCTACCAGCTATCTTGATCGATAGGTAGGTTTGATTCA ACAAAGCGTACAGGAGGGGACAAAACGCTCTACGCGTTTGCACCGTTCAT GAGAAACGTGACAATACGCTTATCGATGGCCGACGTCGATTTTTCAATGG AAAAACAACAATCACGAGAAAGAGTGGGCGAAAGTTACACGAAAATTGGA ACTGAAGCCAGTGTCACATTTTTCCCTGCAGCACTCTCATGCAGGCGACC GAGCAATAAGCATCCCCCTGATGCCACGCTGTACCCCGAACAATTCAATG CTATTGATGACGATTCCCTCTCCAAAACATAACGGACACAGGCTGGAGTG GAGGCGTTGTACCGACATCGAGAAGGCTGCCTTCCTGGCGTACTACCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig20454:6..1354-

>mRNA_Ecto-sp13_S_contig20454.6760.1 ID=mRNA_Ecto-sp13_S_contig20454.6760.1|Name=mRNA_Ecto-sp13_S_contig20454.6760.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig20454:6..1354- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCTCTCCGACGTAGATCGCGACCCTTCGGAGATTTTCCGGAAGAC
GACCTTGCTCGAATTTCCCGCTACGTCCCAGAAGGCGTTAGAATTAATGC
TCATCCGTACCTTCGGCATCCCTTCTGCCGCCGAAGTTTTTCACAAGAGC
CGATCGTTCGTCCACGCGGGCAAGAGGTACGACGACACCGACCTGCTGCT
GAAGGAATATTTCGAGAACCACACGGAGTCGGACCGCGCGAACACCGCGG
TAGCCCGCGTGAACGCCATACACGAAGTTTTCTCCGGCCAGATCAGCAAC
GCGGATATACTCTACTCGCTCGCCTTGTTCGCAACGCTACCAGCTATCTT
GATCGATAGGCTGGAGTGGAGGCGTTGTACCGACATCGAGAAGGCTGCCT
TCCTGGCGTACTACCAG
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